pycom08g04360

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0013553
Physical Location & Seq
Forward (+)
3358972 .. 3359820
849 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g04360.2

Sequence Viewer

Length: 717 bp
ATGGTTAATGAGAAAAGAGTATCCTCCTCTTTTAAACTCTACTCTCTCCATCCATATCACACGCTCCTCCCCTCTCTCCCAAACTCCCAACAAAGCAAAACCCATGAATTACAGTACTTCTCTTTACTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAAAATGGAAAGACATCATCACTCACAACAAAGCAACAGCAACCTCTGCTCGCCAACATCGCCACCCACGACCTTTGTTCAGGCAGACACAAACAACTTCAGAGACCTCGTCCAGAAGCTGACAGGCTTATCCGGCGACTCGGAAAAGCTCCCCATCACACACCCAGCAAGGCACTACCCTAAAGCACCCACAAGTCCCGGTGACCCCACCGGCCCTCGCCGGTCACCGTTCAAGCTGCAAGAGCGAAGACACACCATGAGCAAACTCGAGATTAAGCTCAGTCTCGCAACCCTACATGGCTCTCAGCCGATTCCGAGTCCCGTCACCCCACTCGGGTTCGAGTCGTTTTCATTCCCGAGTTCTGGTTCCGAGTCGCCGTCGTCTCCAGCAGCGGTGGCCGAGGAGGAGAAGGCAATTGCGGAGAAGGGGTTTTATTTGCACCCTTCGCCGCTCAGTACTCCCAGAGGGGCCGGCCCGCCCGAGTTGCTACCCCTGTTTCCGCTGAGTTCACCCAGTAATAATGATCACAAGTCTCTACAGTCCCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

239

Amino Acids

26.02

Weight (kDa)

9.19

Isoelectric Point (pI)

79.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80450
fragaria_vesca FvH4_6g29370
malus_domestica MD08G1052300.v1.1 MD15G1043200.v1.1 MD17G1215500.v1.1
prunus_persica Prupe.1G396600_v2.0.a1 Prupe.3G091700_v2.0.a1
pyrus_communis pycom08g04360 pycom17g21990
rosa_chinensis RchiOBHm_Chr2g0134771
rosa_laevigata RLG00000019420
rosa_multiflora Rmu_sc0000718.1_g000019
rosa_roxburghii Rroxscaffold_2G00109770
rosa_samantha Rh2AG373800 Rh2BG377500 Rh2CG355600 Rh2DG394500
rosa_wichuraiana Rw2G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 619
AciI CCGC 5 cut(s) 560, 587, 617, 644, 668
AcoI YGGCCR 1 cut(s) 564
AcuI CTGAAG 1 cut(s) 250
AfaI GTAC 2 cut(s) 116, 625
AfiI CCNNNNNNNGG 2 cut(s) 501, 530
AgsI TTSAA 1 cut(s) 400
AluBI AGCT 4 cut(s) 286, 316, 403, 445
AluI AGCT 4 cut(s) 286, 316, 403, 445
Alw26I GTCTC 4 cut(s) 264, 455, 555, 705
AlwNI CAGNNNCTG 1 cut(s) 286
Ama87I CYCGRG 4 cut(s) 434, 500, 523, 647
AoxI GGCC 4 cut(s) 379, 564, 636, 640
ApeKI GCWGC 2 cut(s) 403, 557
AspS9I GGNCC 3 cut(s) 380, 636, 641
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 4 cut(s) 380, 384, 484, 669
AvaI CYCGRG 4 cut(s) 434, 500, 523, 647
BbsI GAAGAC 1 cut(s) 421
BbvI GCAGC 2 cut(s) 390, 569
BccI CCATC 2 cut(s) 57, 329
BceAI ACGGC 1 cut(s) 529
BciVI GTATCC 1 cut(s) 31
BclI TGATCA 1 cut(s) 691
BcnI CCSGG 1 cut(s) 366
BcoDI GTCTC 4 cut(s) 264, 455, 555, 705
BfmI CTRYAG 1 cut(s) 704
BfuI GTATCC 1 cut(s) 31
BisI GCNGC 3 cut(s) 404, 558, 617
BlsI GCNGC 3 cut(s) 405, 559, 618
BmcAI AGTACT 2 cut(s) 116, 625
Bme1390I CCNGG 1 cut(s) 366
BmeT110I CYCGRG 4 cut(s) 434, 500, 523, 647
BmgT120I GGNCC 3 cut(s) 380, 636, 641
BmiI GGNNCC 2 cut(s) 535, 637
BmrFI CCNGG 1 cut(s) 366
BmrI ACTGGG 1 cut(s) 675
BmuI ACTGGG 1 cut(s) 675
BpiI GAAGAC 1 cut(s) 421
BpmI CTGGAG 1 cut(s) 537
BpuMI CCSGG 1 cut(s) 366
BsaI GGTCTC 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 567
BsaXI ACNNNNNCTCC 2 cut(s) 581, 611
Bsc4I CCNNNNNNNGG 2 cut(s) 501, 530
Bse118I RCCGGY 3 cut(s) 377, 387, 638
Bse1I ACTGG 1 cut(s) 681
BseDI CCNNGG 1 cut(s) 567
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 2 cut(s) 501, 530
BseMII CTCAG 4 cut(s) 460, 485, 634, 662
BseNI ACTGG 1 cut(s) 681
BseRI GAGGAG 4 cut(s) 16, 56, 584, 587
BseXI GCAGC 2 cut(s) 390, 569
BseYI CCCAGC 1 cut(s) 331
BshFI GGCC 4 cut(s) 381, 566, 638, 642
BsiHKCI CYCGRG 4 cut(s) 434, 500, 523, 647
BsiSI CCGG 5 cut(s) 300, 366, 378, 388, 639
BslFI GGGAC 3 cut(s) 348, 471, 694
BslI CCNNNNNNNGG 2 cut(s) 501, 530
BsmAI GTCTC 4 cut(s) 264, 455, 555, 705
BsmBI CGTCTC 1 cut(s) 555
BsmFI GGGAC 3 cut(s) 348, 471, 694
BsnI GGCC 4 cut(s) 381, 566, 638, 642
Bso31I GGTCTC 1 cut(s) 264
BsoBI CYCGRG 4 cut(s) 434, 500, 523, 647
Bsp143I GATC 1 cut(s) 691
BspACI CCGC 5 cut(s) 560, 587, 617, 644, 668
BspANI GGCC 4 cut(s) 381, 566, 638, 642
BspCNI CTCAG 4 cut(s) 459, 484, 633, 663
BspLI GGNNCC 2 cut(s) 535, 637
BspTNI GGTCTC 1 cut(s) 264
BsrBI CCGCTC 1 cut(s) 619
BsrFI RCCGGY 3 cut(s) 377, 387, 638
BsrI ACTGG 1 cut(s) 681
BssAI RCCGGY 3 cut(s) 377, 387, 638
BssECI CCNNGG 1 cut(s) 567
BssMI GATC 1 cut(s) 691
Bst4CI ACNGT 3 cut(s) 114, 396, 708
BstAPI GCANNNNNTGC 1 cut(s) 213
BstC8I GCNNGC 3 cut(s) 218, 640, 644
BstDEI CTNAG 4 cut(s) 446, 471, 620, 671
BstEII GGTNACC 2 cut(s) 368, 390
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 1 cut(s) 694
BstMAI GTCTC 4 cut(s) 264, 455, 555, 705
BstMBI GATC 1 cut(s) 691
BstMWI GCNNNNNNNGC 7 cut(s) 213, 226, 300, 409, 563, 613, 652
BstPI GGTNACC 2 cut(s) 368, 390
BstSCI CCNGG 1 cut(s) 364
BstSFI CTRYAG 1 cut(s) 704
BstV1I GCAGC 2 cut(s) 390, 569
BstV2I GAAGAC 1 cut(s) 421
BsuI GTATCC 1 cut(s) 31
BsuRI GGCC 4 cut(s) 381, 566, 638, 642
BtgZI GCGATG 1 cut(s) 210
BtsCI GGATG 1 cut(s) 49
Cac8I GCNNGC 3 cut(s) 218, 640, 644
CaiI CAGNNNCTG 1 cut(s) 286
Cfr10I RCCGGY 3 cut(s) 377, 387, 638
Cfr13I GGNCC 3 cut(s) 380, 636, 641
Csp6I GTAC 2 cut(s) 115, 624
CspCI CAANNNNNGTGG 2 cut(s) 223, 258
CviAII CATG 3 cut(s) 104, 424, 464
CviQI GTAC 2 cut(s) 115, 624
DdeI CTNAG 4 cut(s) 446, 471, 620, 671
DpnI GATC 1 cut(s) 693
DpnII GATC 1 cut(s) 691
DraI TTTAAA 1 cut(s) 34
EaeI YGGCCR 1 cut(s) 564
Eco31I GGTCTC 1 cut(s) 264
Eco57I CTGAAG 1 cut(s) 250
Eco88I CYCGRG 4 cut(s) 434, 500, 523, 647
Eco91I GGTNACC 2 cut(s) 368, 390
EcoO65I GGTNACC 2 cut(s) 368, 390
Esp3I CGTCTC 1 cut(s) 555
FaeI CATG 3 cut(s) 107, 427, 467
FaiI YATR 4 cut(s) 55, 105, 425, 465
FaqI GGGAC 3 cut(s) 348, 471, 694
FatI CATG 3 cut(s) 103, 423, 463
FauI CCCGC 1 cut(s) 651
FbaI TGATCA 1 cut(s) 691
Fnu4HI GCNGC 3 cut(s) 404, 558, 617
FokI GGATG 1 cut(s) 36
FseI GGCCGGCC 1 cut(s) 642
Fsp4HI GCNGC 3 cut(s) 404, 558, 617
GluI GCNGC 3 cut(s) 404, 558, 617
GsaI CCCAGC 1 cut(s) 335
GsuI CTGGAG 1 cut(s) 537
HaeIII GGCC 4 cut(s) 381, 566, 638, 642
HapII CCGG 5 cut(s) 300, 366, 378, 388, 639
Hin1II CATG 3 cut(s) 107, 427, 467
HinfI GANTC 5 cut(s) 305, 478, 484, 509, 539
HpaII CCGG 5 cut(s) 300, 366, 378, 388, 639
HphI GGTGA 4 cut(s) 380, 384, 484, 669
Hpy166II GTNNAC 1 cut(s) 677
Hpy188I TCNGA 4 cut(s) 269, 310, 483, 538
Hpy188III TCNNGA 3 cut(s) 280, 436, 523
Hpy8I GTNNAC 1 cut(s) 677
Hpy99I CGWCG 1 cut(s) 550
HpyAV CCTTC 3 cut(s) 571, 586, 621
HpyCH4III ACNGT 3 cut(s) 114, 396, 708
HpyCH4V TGCA 2 cut(s) 406, 607
HpyF10VI GCNNNNNNNGC 7 cut(s) 213, 226, 300, 409, 563, 613, 652
HpyF3I CTNAG 4 cut(s) 446, 471, 620, 671
Hsp92II CATG 3 cut(s) 107, 427, 467
KroI GCCGGC 1 cut(s) 638
KroNI GCCGGC 1 cut(s) 640
Ksp22I TGATCA 1 cut(s) 691
Kzo9I GATC 1 cut(s) 691
LmnI GCTCC 2 cut(s) 69, 321
Lsp1109I GCAGC 2 cut(s) 390, 569
MaeIII GTNAC 3 cut(s) 368, 390, 490
MalI GATC 1 cut(s) 693
MbiI CCGCTC 1 cut(s) 619
MboI GATC 1 cut(s) 691
MboII GAAGA 1 cut(s) 426
MfeI CAATTG 1 cut(s) 582
MluCI AATT 2 cut(s) 107, 582
MlyI GAGTC 4 cut(s) 299, 493, 518, 548
MroNI GCCGGC 1 cut(s) 638
MseI TTAA 3 cut(s) 6, 33, 441
MspA1I CMGCKG 2 cut(s) 560, 670
MspI CCGG 5 cut(s) 300, 366, 378, 388, 639
MspR9I CCNGG 1 cut(s) 366
MunI CAATTG 1 cut(s) 582
MwoI GCNNNNNNNGC 7 cut(s) 213, 226, 300, 409, 563, 613, 652
NaeI GCCGGC 1 cut(s) 640
NciI CCSGG 1 cut(s) 366
NdeII GATC 1 cut(s) 691
NgoMIV GCCGGC 1 cut(s) 638
NlaIII CATG 3 cut(s) 107, 427, 467
NlaIV GGNNCC 2 cut(s) 535, 637
NmeAIII GCCGAG 1 cut(s) 592
NmuCI GTSAC 3 cut(s) 368, 390, 490
PaeR7I CTCGAG 1 cut(s) 434
PcsI WCGNNNNNNNCGW 1 cut(s) 233
PdiI GCCGGC 1 cut(s) 640
PfeI GAWTC 1 cut(s) 478
PflFI GACNNNGTC 1 cut(s) 275
PkrI GCNGC 3 cut(s) 405, 559, 618
PleI GAGTC 4 cut(s) 299, 492, 517, 547
PpsI GAGTC 4 cut(s) 299, 492, 517, 547
PspEI GGTNACC 2 cut(s) 368, 390
PspFI CCCAGC 1 cut(s) 331
PspN4I GGNNCC 2 cut(s) 535, 637
PspPI GGNCC 3 cut(s) 380, 636, 641
PstNI CAGNNNCTG 1 cut(s) 286
PsyI GACNNNGTC 1 cut(s) 275
RigI GGCCGGCC 1 cut(s) 642
RsaI GTAC 2 cut(s) 116, 625
RsaNI GTAC 2 cut(s) 115, 624
SaqAI TTAA 3 cut(s) 6, 33, 441
SatI GCNGC 3 cut(s) 404, 558, 617
Sau3AI GATC 1 cut(s) 691
Sau96I GGNCC 3 cut(s) 380, 636, 641
ScaI AGTACT 2 cut(s) 116, 625
SchI GAGTC 4 cut(s) 299, 493, 518, 548
ScrFI CCNGG 1 cut(s) 366
SetI ASST 7 cut(s) 213, 242, 276, 288, 318, 405, 447
SfcI CTRYAG 1 cut(s) 704
Sfr274I CTCGAG 1 cut(s) 434
SlaI CTCGAG 1 cut(s) 434
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 2 cut(s) 107, 582
SsiI CCGC 5 cut(s) 560, 587, 617, 644, 668
StyD4I CCNGG 1 cut(s) 364
TaaI ACNGT 3 cut(s) 114, 396, 708
TaqI TCGA 2 cut(s) 435, 507
TasI AATT 2 cut(s) 107, 582
TatI WGTACW 2 cut(s) 114, 623
TauI GCSGC 1 cut(s) 619
TfiI GAWTC 1 cut(s) 478
Tru1I TTAA 3 cut(s) 6, 33, 441
Tru9I TTAA 3 cut(s) 6, 33, 441
TseFI GTSAC 3 cut(s) 368, 390, 490
TseI GCWGC 2 cut(s) 403, 557
Tsp45I GTSAC 3 cut(s) 368, 390, 490
TspDTI ATGAA 2 cut(s) 120, 507
Tth111I GACNNNGTC 1 cut(s) 275
XhoI CTCGAG 1 cut(s) 434
ZrmI AGTACT 2 cut(s) 116, 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.