Prupe.3G091700_v2.0.a1

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0013553
Physical Location & Seq
Reverse (-)
6831873 .. 6833100
1228 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G091700.1

Sequence Viewer

Length: 564 bp
ATGAACACGCCCACTTGCGGACCCGACCCGGTTTCACCCAACACCACATACGTCCAAGCCGACCCGGCAACTTTCAGGGCCGTGGTCCAGAAGCTGACCGGAGCACCGGAAGACCCATCAGCCCAAAAGCTCCCTCTCACCCTCCCAGCCCGCTATTCCAACCCAAAACCCACCACCGCCACCGAAATGGGGCCCCGGAGACCCGCTTTCAAGCTCCACGAGCGCAGGCAAGCCACCAAGAAGCTAGAGCTCAACCTCAACACGGCGAGCCCATCCGCCTCATGTGGGCCTCACGGTAGGCCCAGAGGGTTTGTAGGTTTTGGGAGCCATCACGAGATGGTAATGGTTTCGCCCGTTTCGACATTGGATTTTCTCGCACGTGGGAGCCCGAGGACGCCCGCGTCACCGTGTGAAGATGAAGATAGGGCCATTGCTGAGAAGGGGTTCTATTTGCACCCAAGTCCTCCGCTAAGTACACCCAGAGGCTCTGAGCCTCCTGAGCTATTGCCTCTGTTTCCCCTCCATTCTCCACGAGATAGCCAGAACTCTTCTTCTGCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

188

Amino Acids

20.11

Weight (kDa)

8.88

Isoelectric Point (pI)

55.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80450
fragaria_vesca FvH4_6g29370
malus_domestica MD08G1052300.v1.1 MD15G1043200.v1.1 MD17G1215500.v1.1
prunus_persica Prupe.1G396600_v2.0.a1 Prupe.3G091700_v2.0.a1
pyrus_communis pycom08g04360 pycom17g21990
rosa_chinensis RchiOBHm_Chr2g0134771
rosa_laevigata RLG00000019420
rosa_multiflora Rmu_sc0000718.1_g000019
rosa_roxburghii Rroxscaffold_2G00109770
rosa_samantha Rh2AG373800 Rh2BG377500 Rh2CG355600 Rh2DG394500
rosa_wichuraiana Rw2G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 400
AccII CGCG 1 cut(s) 401
AciI CCGC 7 cut(s) 18, 151, 177, 204, 276, 399, 467
AcvI CACGTG 1 cut(s) 380
AcyI GRCGYC 1 cut(s) 395
AdeI CACNNNGTG 1 cut(s) 410
AfaI GTAC 1 cut(s) 475
AfiI CCNNNNNNNGG 4 cut(s) 17, 189, 262, 285
AgsI TTSAA 1 cut(s) 211
AluBI AGCT 6 cut(s) 94, 130, 214, 244, 250, 502
AluI AGCT 6 cut(s) 94, 130, 214, 244, 250, 502
Alw21I GWGCWC 2 cut(s) 106, 252
Alw26I GTCTC 1 cut(s) 193
AlwNI CAGNNNCTG 1 cut(s) 94
Ama87I CYCGRG 1 cut(s) 388
AoxI GGCC 5 cut(s) 78, 191, 287, 299, 426
ApaI GGGCCC 1 cut(s) 195
Asp700I GAANNNNTTC 1 cut(s) 443
AspLEI GCGC 1 cut(s) 225
AspS9I GGNCC 8 cut(s) 20, 78, 85, 191, 192, 287, 300, 426
AsuC2I CCSGG 3 cut(s) 29, 65, 196
AsuHPI GGTGA 3 cut(s) 27, 130, 396
AvaI CYCGRG 1 cut(s) 388
AvaII GGWCC 2 cut(s) 20, 85
BaeGI GKGCMC 1 cut(s) 195
BanII GRGCYC 4 cut(s) 195, 252, 272, 389
BauI CACGAG 3 cut(s) 218, 332, 531
BbrPI CACGTG 1 cut(s) 380
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 2 cut(s) 106, 252
BccI CCATC 4 cut(s) 124, 280, 331, 336
BceAI ACGGC 2 cut(s) 65, 279
BcnI CCSGG 3 cut(s) 29, 65, 196
BcoDI GTCTC 1 cut(s) 193
BfaI CTAG 1 cut(s) 245
BglI GCCNNNNNGGC 1 cut(s) 65
Bme1390I CCNGG 3 cut(s) 29, 65, 196
Bme18I GGWCC 2 cut(s) 20, 85
BmeT110I CYCGRG 1 cut(s) 388
BmgT120I GGNCC 8 cut(s) 20, 78, 85, 191, 192, 287, 300, 426
BmiI GGNNCC 6 cut(s) 22, 192, 193, 194, 326, 386
BmrFI CCNGG 3 cut(s) 29, 65, 196
BpiI GAAGAC 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 498
BpuMI CCSGG 3 cut(s) 29, 65, 196
BsaAI YACGTR 1 cut(s) 380
BsaHI GRCGYC 1 cut(s) 395
BsaI GGTCTC 1 cut(s) 193
BsaJI CCNNGG 3 cut(s) 81, 194, 389
BsaWI WCCGGW 2 cut(s) 98, 106
Bsc4I CCNNNNNNNGG 4 cut(s) 17, 189, 262, 285
Bse3DI GCAATG 1 cut(s) 429
BseDI CCNNGG 3 cut(s) 81, 194, 389
BseGI GGATG 1 cut(s) 272
BseLI CCNNNNNNNGG 4 cut(s) 17, 189, 262, 285
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 3 cut(s) 426, 480, 489
BseSI GKGCMC 1 cut(s) 195
BseYI CCCAGC 1 cut(s) 145
Bsh1236I CGCG 1 cut(s) 401
BshFI GGCC 5 cut(s) 80, 193, 289, 301, 428
BsiHKAI GWGCWC 2 cut(s) 106, 252
BsiHKCI CYCGRG 1 cut(s) 388
BsiSI CCGG 5 cut(s) 29, 65, 99, 107, 196
BslI CCNNNNNNNGG 4 cut(s) 17, 189, 262, 285
BsmAI GTCTC 1 cut(s) 193
BsnI GGCC 5 cut(s) 80, 193, 289, 301, 428
Bso31I GGTCTC 1 cut(s) 193
BsoBI CYCGRG 1 cut(s) 388
Bsp120I GGGCCC 1 cut(s) 191
Bsp1286I GDGCHC 5 cut(s) 106, 195, 252, 272, 389
BspACI CCGC 7 cut(s) 18, 151, 177, 204, 276, 399, 467
BspANI GGCC 5 cut(s) 80, 193, 289, 301, 428
BspCNI CTCAG 3 cut(s) 427, 481, 490
BspFNI CGCG 1 cut(s) 401
BspLI GGNNCC 6 cut(s) 22, 192, 193, 194, 326, 386
BspTNI GGTCTC 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 429
BssECI CCNNGG 3 cut(s) 81, 194, 389
BssNI GRCGYC 1 cut(s) 395
BssSI CACGAG 3 cut(s) 218, 332, 531
Bst2BI CACGAG 3 cut(s) 218, 332, 531
Bst4CI ACNGT 2 cut(s) 296, 408
Bst6I CTCTTC 1 cut(s) 553
BstACI GRCGYC 1 cut(s) 395
BstBAI YACGTR 1 cut(s) 380
BstC8I GCNNGC 5 cut(s) 151, 227, 231, 268, 399
BstDEI CTNAG 4 cut(s) 435, 470, 489, 498
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 1 cut(s) 272
BstFNI CGCG 1 cut(s) 401
BstHHI GCGC 1 cut(s) 225
BstMAI GTCTC 1 cut(s) 193
BstMWI GCNNNNNNNGC 3 cut(s) 65, 220, 499
BstSCI CCNGG 3 cut(s) 27, 63, 194
BstSLI GKGCMC 1 cut(s) 195
BstUI CGCG 1 cut(s) 401
BstV2I GAAGAC 1 cut(s) 117
BstXI CCANNNNNNTGG 1 cut(s) 187
BsuRI GGCC 5 cut(s) 80, 193, 289, 301, 428
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 1 cut(s) 272
Cac8I GCNNGC 5 cut(s) 151, 227, 231, 268, 399
CaiI CAGNNNCTG 1 cut(s) 94
CfoI GCGC 1 cut(s) 225
Cfr13I GGNCC 8 cut(s) 20, 78, 85, 191, 192, 287, 300, 426
CseI GACGC 2 cut(s) 390, 403
Csp6I GTAC 1 cut(s) 474
CviAII CATG 1 cut(s) 282
CviQI GTAC 1 cut(s) 474
DdeI CTNAG 4 cut(s) 435, 470, 489, 498
DraIII CACNNNGTG 1 cut(s) 410
DrdI GACNNNNNNGTC 1 cut(s) 400
DseDI GACNNNNNNGTC 1 cut(s) 400
Eam1104I CTCTTC 1 cut(s) 553
EarI CTCTTC 1 cut(s) 553
EciI GGCGGA 1 cut(s) 265
Ecl136II GAGCTC 1 cut(s) 250
Eco24I GRGCYC 4 cut(s) 195, 252, 272, 389
Eco31I GGTCTC 1 cut(s) 193
Eco47I GGWCC 2 cut(s) 20, 85
Eco53kI GAGCTC 1 cut(s) 250
Eco72I CACGTG 1 cut(s) 380
Eco88I CYCGRG 1 cut(s) 388
EcoICRI GAGCTC 1 cut(s) 250
EcoO109I RGGNCCY 2 cut(s) 191, 192
EcoT38I GRGCYC 4 cut(s) 195, 252, 272, 389
FaeI CATG 1 cut(s) 285
FaiI YATR 2 cut(s) 49, 283
FatI CATG 1 cut(s) 281
FauI CCCGC 3 cut(s) 158, 211, 406
FokI GGATG 1 cut(s) 259
FriOI GRGCYC 4 cut(s) 195, 252, 272, 389
FspBI CTAG 1 cut(s) 245
GlaI GCGC 1 cut(s) 224
GsaI CCCAGC 1 cut(s) 149
HaeIII GGCC 5 cut(s) 80, 193, 289, 301, 428
HapII CCGG 5 cut(s) 29, 65, 99, 107, 196
HgaI GACGC 2 cut(s) 390, 403
HhaI GCGC 1 cut(s) 225
Hin1I GRCGYC 1 cut(s) 395
Hin1II CATG 1 cut(s) 285
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HpaII CCGG 5 cut(s) 29, 65, 99, 107, 196
HphI GGTGA 3 cut(s) 27, 130, 396
Hpy166II GTNNAC 1 cut(s) 476
Hpy188I TCNGA 1 cut(s) 490
Hpy188III TCNNGA 3 cut(s) 88, 332, 497
Hpy8I GTNNAC 1 cut(s) 476
HpyAV CCTTC 1 cut(s) 433
HpyCH4III ACNGT 2 cut(s) 296, 408
HpyCH4IV ACGT 2 cut(s) 51, 379
HpyCH4V TGCA 1 cut(s) 454
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 220, 499
HpyF3I CTNAG 4 cut(s) 435, 470, 489, 498
HpySE526I ACGT 2 cut(s) 51, 379
Hsp92I GRCGYC 1 cut(s) 395
Hsp92II CATG 1 cut(s) 285
HspAI GCGC 1 cut(s) 223
LmnI GCTCC 5 cut(s) 101, 135, 219, 324, 384
MaeI CTAG 1 cut(s) 245
MaeII ACGT 2 cut(s) 51, 379
MaeIII GTNAC 1 cut(s) 402
MboII GAAGA 5 cut(s) 122, 425, 431, 540, 543
MhlI GDGCHC 5 cut(s) 106, 195, 252, 272, 389
MmeI TCCRAC 1 cut(s) 183
MroXI GAANNNNTTC 1 cut(s) 443
MseI TTAA 1 cut(s) 562
MslI CAYNNNNRTG 1 cut(s) 185
MspI CCGG 5 cut(s) 29, 65, 99, 107, 196
MspR9I CCNGG 3 cut(s) 29, 65, 196
MvnI CGCG 1 cut(s) 401
MwoI GCNNNNNNNGC 3 cut(s) 65, 220, 499
NciI CCSGG 3 cut(s) 29, 65, 196
NlaIII CATG 1 cut(s) 285
NlaIV GGNNCC 6 cut(s) 22, 192, 193, 194, 326, 386
NmuCI GTSAC 1 cut(s) 402
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 356
PdmI GAANNNNTTC 1 cut(s) 443
PmaCI CACGTG 1 cut(s) 380
PmlI CACGTG 1 cut(s) 380
Ppu21I YACGTR 1 cut(s) 380
Psp124BI GAGCTC 1 cut(s) 252
PspCI CACGTG 1 cut(s) 380
PspFI CCCAGC 1 cut(s) 145
PspN4I GGNNCC 6 cut(s) 22, 192, 193, 194, 326, 386
PspOMI GGGCCC 1 cut(s) 191
PspPI GGNCC 8 cut(s) 20, 78, 85, 191, 192, 287, 300, 426
PstNI CAGNNNCTG 1 cut(s) 94
RsaI GTAC 1 cut(s) 475
RsaNI GTAC 1 cut(s) 474
RseI CAYNNNNRTG 1 cut(s) 185
SacI GAGCTC 1 cut(s) 252
SaqAI TTAA 1 cut(s) 562
Sau96I GGNCC 8 cut(s) 20, 78, 85, 191, 192, 287, 300, 426
ScrFI CCNGG 3 cut(s) 29, 65, 196
SduI GDGCHC 5 cut(s) 106, 195, 252, 272, 389
SinI GGWCC 2 cut(s) 20, 85
SmiMI CAYNNNNRTG 1 cut(s) 185
SsiI CCGC 7 cut(s) 18, 151, 177, 204, 276, 399, 467
SspMI CTAG 1 cut(s) 245
SstI GAGCTC 1 cut(s) 252
StyD4I CCNGG 3 cut(s) 27, 63, 194
TaaI ACNGT 2 cut(s) 296, 408
TaiI ACGT 2 cut(s) 54, 382
TaqI TCGA 1 cut(s) 359
TatI WGTACW 1 cut(s) 473
Tru1I TTAA 1 cut(s) 562
Tru9I TTAA 1 cut(s) 562
TseFI GTSAC 1 cut(s) 402
Tsp45I GTSAC 1 cut(s) 402
TspDTI ATGAA 2 cut(s) 17, 432
VpaK11BI GGWCC 2 cut(s) 20, 85
XmnI GAANNNNTTC 1 cut(s) 443
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.