AT1G80950

Lysophospholipid acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005846
Physical Location & Seq
Reverse (-)
30412149 .. 30415264
3116 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80950.2

Sequence Viewer

Length: 1197 bp
ATGGAATCAGAGCTCAAAGATTTGAATTCGAATTCGAATCCTCCGTCGAGCAAAGAGGACCGGCCGTTACTGAAATCAGAATCCGATTTGGCGGCTGCCATTGAAGAGTTAGACAAAAAGTTCGCACCTTACGCGAGGACCGATTTGTATGGGACGATGGGTTTGGGTCCTTTCCCGATGACGGAGAATATTAAATTGGCGGTTGCATTGGTGACTCTTGTTCCATTGCGGTTTCTTCTCTCGATGAGCATCTTGCTTCTCTATTACTTGATTTGTAGGGTATTTACGCTGTTTTCTGCTCCTTATCGTGGGCCAGAGGAAGAGGAAGATGAAGGTGGAGTTGTTTTTCAGGAAGATTATGCTCACATGGAAGGTTGGAAACGGACTGTTATCGTCCGGTCTGGGAGGTTTCTCTCTAGGGTTTTGCTTTTCGTTTTTGGGTTTTATTGGATTCACGAGAGCTGTCCAGATCGAGATTCAGACATGGATTCTAATCCTAAAACTACTTCTACAGAGATAAACCAGAAAGGGGAAGCCGCCACGGAGGAACCTGAAAGACCTGGAGCCATTGTGTCCAATCATGTTTCGTACTTGGACATTTTGTATCATATGTCTGCTTCTTTTCCAAGTTTTGTTGCCAAGAGATCAGTGGGCAAACTTCCTCTTGTTGGCCTCATTAGCAAATGCCTTGGTTGTGTCTATGTTCAAAGAGAAGCAAAATCGCCTGATTTCAAGGGTGTATCTGGCACAGTAAATGAAAGAGTTCGAGAAGCTCATAGCAATAAATCTGCTCCAACTATTATGCTTTTTCCAGAAGGAACAACTACCAATGGAGACTACTTACTTACATTCAAGACAGGTGCATTTTTGGCTGGAACTCCAGTTCTTCCGGTAATATTAAAATATCCGTATGAGCGCTTCAGTGTGGCATGGGATACCATATCCGGGGCACGCCACATTTTATTCCTTCTCTGTCAAGTCGTAAATCACTTGGAAGTCATACGGTTACCTGTATACTACCCATCCCAAGAAGAGAAAGACGATCCCAAACTTTATGCTAGCAATGTTCGGAAATTAATGGCCACCGAGGGTAACTTGATTCTATCGGAGTTGGGACTTAGCGACAAAAGGATATATCACGCAACTCTCAATGGTAATCTTAGTCAAACCCGTGATTTCCATCAGAAAGAAGAATGA

Protein Analysis

398

Amino Acids

44.71

Weight (kDa)

5.71

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 185 - 300 8e-19 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1014
AccII CGCG 1 cut(s) 134
AciI CCGC 4 cut(s) 92, 200, 229, 537
AclWI GGATC 1 cut(s) 1037
AcoI YGGCCR 2 cut(s) 62, 1080
AcsI RAATTY 2 cut(s) 25, 31
AcuI CTGAAG 1 cut(s) 904
AfaI GTAC 1 cut(s) 590
AfeI AGCGCT 1 cut(s) 917
AfiI CCNNNNNNNGG 5 cut(s) 181, 308, 529, 668, 945
AgsI TTSAA 5 cut(s) 25, 104, 707, 733, 853
AjnI CCWGG 1 cut(s) 559
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AloI GAACNNNNNNTCC 2 cut(s) 867, 899
AluBI AGCT 3 cut(s) 13, 462, 773
AluI AGCT 3 cut(s) 13, 462, 773
Alw21I GWGCWC 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 828
AlwI GGATC 1 cut(s) 1037
Aor51HI AGCGCT 1 cut(s) 917
AoxI GGCC 4 cut(s) 62, 311, 670, 1080
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 2 cut(s) 25, 31
ArsI GACNNNNNNTTYG 6 cut(s) 29, 61, 104, 136, 145, 177
AseI ATTAAT 1 cut(s) 1076
Asp700I GAANNNNTTC 1 cut(s) 762
AspLEI GCGC 1 cut(s) 918
AspS9I GGNCC 4 cut(s) 58, 138, 167, 311
AsuC2I CCSGG 1 cut(s) 946
AsuHPI GGTGA 1 cut(s) 223
AsuII TTCGAA 2 cut(s) 29, 35
AsuNHI GCTAGC 1 cut(s) 1058
AvaII GGWCC 3 cut(s) 58, 138, 167
BaeGI GKGCMC 1 cut(s) 952
BalI TGGCCA 1 cut(s) 1082
BanII GRGCYC 1 cut(s) 15
BarI GAAGNNNNNNTAC 2 cut(s) 902, 934
BauI CACGAG 1 cut(s) 455
Bbv12I GWGCWC 1 cut(s) 15
BbvI GCAGC 1 cut(s) 82
BccI CCATC 3 cut(s) 151, 1030, 1188
BceAI ACGGC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 561
BciVI GTATCC 1 cut(s) 928
BcnI CCSGG 1 cut(s) 946
BcoDI GTCTC 1 cut(s) 828
BfaI CTAG 2 cut(s) 417, 1059
BfmI CTRYAG 1 cut(s) 510
BfoI RGCGCY 1 cut(s) 919
BfuI GTATCC 1 cut(s) 928
BisI GCNGC 3 cut(s) 93, 96, 537
BlsI GCNGC 3 cut(s) 94, 97, 538
Bme1390I CCNGG 2 cut(s) 561, 946
Bme18I GGWCC 3 cut(s) 58, 138, 167
BmgT120I GGNCC 4 cut(s) 58, 138, 167, 311
BmiI GGNNCC 3 cut(s) 168, 549, 565
BmrFI CCNGG 2 cut(s) 561, 946
BmsI GCATC 1 cut(s) 258
BmtI GCTAGC 1 cut(s) 1062
BpmI CTGGAG 2 cut(s) 582, 864
Bpu14I TTCGAA 2 cut(s) 29, 35
BpuMI CCSGG 1 cut(s) 946
BsaBI GATNNNNATC 3 cut(s) 248, 492, 1179
BsaJI CCNNGG 4 cut(s) 540, 688, 945, 1086
BsaWI WCCGGW 2 cut(s) 396, 889
BsaXI ACNNNNNCTCC 2 cut(s) 555, 585
Bsc4I CCNNNNNNNGG 5 cut(s) 181, 308, 529, 668, 945
Bse118I RCCGGY 1 cut(s) 60
Bse1I ACTGG 1 cut(s) 881
Bse3DI GCAATG 2 cut(s) 224, 1069
Bse8I GATNNNNATC 3 cut(s) 248, 492, 1179
BseBI CCWGG 1 cut(s) 561
BseDI CCNNGG 4 cut(s) 540, 688, 945, 1086
BseGI GGATG 1 cut(s) 1022
BseJI GATNNNNATC 3 cut(s) 248, 492, 1179
BseLI CCNNNNNNNGG 5 cut(s) 181, 308, 529, 668, 945
BseMI GCAATG 2 cut(s) 224, 1069
BseNI ACTGG 1 cut(s) 881
BseSI GKGCMC 1 cut(s) 952
BseX3I CGGCCG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 82
Bsh1236I CGCG 1 cut(s) 134
Bsh1285I CGRYCG 1 cut(s) 65
BshFI GGCC 4 cut(s) 64, 313, 672, 1082
BsiEI CGRYCG 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 15
BsiSI CCGG 4 cut(s) 61, 397, 890, 945
BslFI GGGAC 2 cut(s) 166, 1128
BslI CCNNNNNNNGG 5 cut(s) 181, 308, 529, 668, 945
BsmAI GTCTC 1 cut(s) 828
BsmFI GGGAC 2 cut(s) 166, 1128
BsnI GGCC 4 cut(s) 64, 313, 672, 1082
Bsp119I TTCGAA 2 cut(s) 29, 35
Bsp1286I GDGCHC 2 cut(s) 15, 952
Bsp143I GATC 3 cut(s) 469, 644, 1042
BspACI CCGC 4 cut(s) 92, 200, 229, 537
BspANI GGCC 4 cut(s) 64, 313, 672, 1082
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 3 cut(s) 168, 549, 565
BspOI GCTAGC 1 cut(s) 1062
BspPI GGATC 1 cut(s) 1037
BspT104I TTCGAA 2 cut(s) 29, 35
BsrDI GCAATG 2 cut(s) 224, 1069
BsrFI RCCGGY 1 cut(s) 60
BsrI ACTGG 1 cut(s) 881
BssAI RCCGGY 1 cut(s) 60
BssECI CCNNGG 4 cut(s) 540, 688, 945, 1086
BssMI GATC 3 cut(s) 469, 644, 1042
BssNAI GTATAC 1 cut(s) 1015
BssSI CACGAG 1 cut(s) 455
BssT1I CCWWGG 1 cut(s) 688
Bst1107I GTATAC 1 cut(s) 1015
Bst2BI CACGAG 1 cut(s) 455
Bst2UI CCWGG 1 cut(s) 561
Bst4CI ACNGT 3 cut(s) 388, 751, 1005
Bst6I CTCTTC 3 cut(s) 99, 315, 1026
BstBI TTCGAA 2 cut(s) 29, 35
BstC8I GCNNGC 2 cut(s) 952, 1060
BstDEI CTNAG 2 cut(s) 1118, 1160
BstDSI CCRYGG 1 cut(s) 540
BstEII GGTNACC 1 cut(s) 1005
BstF5I GGATG 1 cut(s) 1022
BstFNI CGCG 1 cut(s) 134
BstH2I RGCGCY 1 cut(s) 919
BstHHI GCGC 1 cut(s) 918
BstKTI GATC 3 cut(s) 472, 647, 1045
BstMAI GTCTC 1 cut(s) 828
BstMBI GATC 3 cut(s) 469, 644, 1042
BstMCI CGRYCG 1 cut(s) 65
BstMWI GCNNNNNNNGC 3 cut(s) 131, 678, 869
BstNI CCWGG 1 cut(s) 561
BstPI GGTNACC 1 cut(s) 1005
BstSCI CCNGG 2 cut(s) 559, 944
BstSFI CTRYAG 1 cut(s) 510
BstSLI GKGCMC 1 cut(s) 952
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 82
BstZ17I GTATAC 1 cut(s) 1015
BstZI CGGCCG 1 cut(s) 62
BsuI GTATCC 1 cut(s) 928
BsuRI GGCC 4 cut(s) 64, 313, 672, 1082
BtgI CCRYGG 1 cut(s) 540
BtsCI GGATG 1 cut(s) 1022
BtsIMutI CAGTG 2 cut(s) 654, 928
Cac8I GCNNGC 2 cut(s) 952, 1060
CfoI GCGC 1 cut(s) 918
Cfr10I RCCGGY 1 cut(s) 60
Cfr13I GGNCC 4 cut(s) 58, 138, 167, 311
Csp6I GTAC 1 cut(s) 589
CviAII CATG 4 cut(s) 367, 484, 581, 930
CviQI GTAC 1 cut(s) 589
DdeI CTNAG 2 cut(s) 1118, 1160
DpnI GATC 3 cut(s) 471, 646, 1044
DpnII GATC 3 cut(s) 469, 644, 1042
EaeI YGGCCR 2 cut(s) 62, 1080
EagI CGGCCG 1 cut(s) 62
Eam1104I CTCTTC 3 cut(s) 99, 315, 1026
EarI CTCTTC 3 cut(s) 99, 315, 1026
Ecl136II GAGCTC 1 cut(s) 13
EclXI CGGCCG 1 cut(s) 62
Eco130I CCWWGG 1 cut(s) 688
Eco24I GRGCYC 1 cut(s) 15
Eco47I GGWCC 3 cut(s) 58, 138, 167
Eco47III AGCGCT 1 cut(s) 917
Eco52I CGGCCG 1 cut(s) 62
Eco53kI GAGCTC 1 cut(s) 13
Eco57I CTGAAG 1 cut(s) 904
Eco91I GGTNACC 1 cut(s) 1005
EcoICRI GAGCTC 1 cut(s) 13
EcoO109I RGGNCCY 1 cut(s) 167
EcoO65I GGTNACC 1 cut(s) 1005
EcoRI GAATTC 2 cut(s) 25, 31
EcoRII CCWGG 1 cut(s) 559
EcoT14I CCWWGG 1 cut(s) 688
EcoT38I GRGCYC 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 688
FaeI CATG 4 cut(s) 370, 487, 584, 933
FaqI GGGAC 2 cut(s) 166, 1128
FatI CATG 4 cut(s) 366, 483, 580, 929
FauNDI CATATG 1 cut(s) 609
FblI GTMKAC 1 cut(s) 1014
Fnu4HI GCNGC 3 cut(s) 93, 96, 537
FokI GGATG 1 cut(s) 1009
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 3 cut(s) 93, 96, 537
FspBI CTAG 2 cut(s) 417, 1059
GlaI GCGC 1 cut(s) 917
GluI GCNGC 3 cut(s) 93, 96, 537
GsuI CTGGAG 2 cut(s) 582, 864
HaeII RGCGCY 1 cut(s) 919
HaeIII GGCC 4 cut(s) 64, 313, 672, 1082
HapII CCGG 4 cut(s) 61, 397, 890, 945
HhaI GCGC 1 cut(s) 918
Hin1II CATG 4 cut(s) 370, 487, 584, 933
Hin6I GCGC 1 cut(s) 916
HinP1I GCGC 1 cut(s) 916
HinfI GANTC 8 cut(s) 5, 37, 80, 214, 451, 476, 488, 1099
HpaII CCGG 4 cut(s) 61, 397, 890, 945
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 1 cut(s) 1015
Hpy188I TCNGA 7 cut(s) 10, 79, 85, 481, 1071, 1108, 1185
Hpy188III TCNNGA 9 cut(s) 175, 241, 350, 455, 467, 473, 767, 812, 853
Hpy8I GTNNAC 1 cut(s) 1015
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 4 cut(s) 326, 365, 809, 977
HpyCH4III ACNGT 3 cut(s) 388, 751, 1005
HpyCH4V TGCA 2 cut(s) 206, 863
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 678, 869
HpyF3I CTNAG 2 cut(s) 1118, 1160
Hsp92II CATG 4 cut(s) 370, 487, 584, 933
HspAI GCGC 1 cut(s) 916
Kzo9I GATC 3 cut(s) 469, 644, 1042
LmnI GCTCC 3 cut(s) 304, 563, 796
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 1 cut(s) 258
MaeI CTAG 2 cut(s) 417, 1059
MaeIII GTNAC 4 cut(s) 66, 211, 1005, 1091
MalI GATC 3 cut(s) 471, 646, 1044
MboI GATC 3 cut(s) 469, 644, 1042
MboII GAAGA 7 cut(s) 116, 227, 332, 338, 365, 878, 1043
MhlI GDGCHC 2 cut(s) 15, 952
MlsI TGGCCA 1 cut(s) 1082
MluCI AATT 4 cut(s) 25, 31, 194, 1073
MluNI TGGCCA 1 cut(s) 1082
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 2 cut(s) 356, 818
Mox20I TGGCCA 1 cut(s) 1082
MroXI GAANNNNTTC 1 cut(s) 762
MscI TGGCCA 1 cut(s) 1082
MseI TTAA 3 cut(s) 192, 899, 1076
Msp20I TGGCCA 1 cut(s) 1082
MspI CCGG 4 cut(s) 61, 397, 890, 945
MspR9I CCNGG 2 cut(s) 561, 946
MvaI CCWGG 1 cut(s) 561
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 3 cut(s) 131, 678, 869
NciI CCSGG 1 cut(s) 946
NdeI CATATG 1 cut(s) 609
NdeII GATC 3 cut(s) 469, 644, 1042
NheI GCTAGC 1 cut(s) 1058
NlaIII CATG 4 cut(s) 370, 487, 584, 933
NlaIV GGNNCC 3 cut(s) 168, 549, 565
NmuCI GTSAC 1 cut(s) 211
NspV TTCGAA 2 cut(s) 29, 35
PcsI WCGNNNNNNNCGW 2 cut(s) 41, 138
PdmI GAANNNNTTC 1 cut(s) 762
PfeI GAWTC 7 cut(s) 5, 37, 80, 451, 476, 488, 1099
PkrI GCNGC 3 cut(s) 94, 97, 538
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PpuMI RGGWCCY 1 cut(s) 167
PshBI ATTAAT 1 cut(s) 1076
Psp124BI GAGCTC 1 cut(s) 15
Psp5II RGGWCCY 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 559
PspEI GGTNACC 1 cut(s) 1005
PspGI CCWGG 1 cut(s) 559
PspN4I GGNNCC 3 cut(s) 168, 549, 565
PspPI GGNCC 4 cut(s) 58, 138, 167, 311
PspPPI RGGWCCY 1 cut(s) 167
RsaI GTAC 1 cut(s) 590
RsaNI GTAC 1 cut(s) 589
SacI GAGCTC 1 cut(s) 15
SaqAI TTAA 3 cut(s) 192, 899, 1076
SatI GCNGC 3 cut(s) 93, 96, 537
Sau3AI GATC 3 cut(s) 469, 644, 1042
Sau96I GGNCC 4 cut(s) 58, 138, 167, 311
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 2 cut(s) 561, 946
SduI GDGCHC 2 cut(s) 15, 952
SfaNI GCATC 1 cut(s) 258
SfcI CTRYAG 1 cut(s) 510
SfuI TTCGAA 2 cut(s) 29, 35
SinI GGWCC 3 cut(s) 58, 138, 167
Sse9I AATT 4 cut(s) 25, 31, 194, 1073
SsiI CCGC 4 cut(s) 92, 200, 229, 537
SspI AATATT 2 cut(s) 190, 897
SspMI CTAG 2 cut(s) 417, 1059
SstI GAGCTC 1 cut(s) 15
StyD4I CCNGG 2 cut(s) 559, 944
StyI CCWWGG 1 cut(s) 688
TaaI ACNGT 3 cut(s) 388, 751, 1005
TaqI TCGA 6 cut(s) 29, 35, 47, 242, 472, 766
TaqII GACCGA 1 cut(s) 155
TasI AATT 4 cut(s) 25, 31, 194, 1073
TauI GCSGC 2 cut(s) 95, 539
TfiI GAWTC 7 cut(s) 5, 37, 80, 451, 476, 488, 1099
Tru1I TTAA 3 cut(s) 192, 899, 1076
Tru9I TTAA 3 cut(s) 192, 899, 1076
TscAI CASTG 2 cut(s) 654, 928
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 2 cut(s) 345, 771
TspGWI ACGGA 5 cut(s) 33, 197, 397, 557, 897
TspRI CASTG 2 cut(s) 654, 928
VpaK11BI GGWCC 3 cut(s) 58, 138, 167
VspI ATTAAT 1 cut(s) 1076
XapI RAATTY 2 cut(s) 25, 31
XcmI CCANNNNNNNNNTGG 1 cut(s) 646
XmiI GTMKAC 1 cut(s) 1014
XmnI GAANNNNTTC 1 cut(s) 762
XspI CTAG 2 cut(s) 417, 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.