Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005846

Physical Location & Seq

Genomic Coordinates Reverse (-)

64231468 .. 64235717

Gene Structure 4250 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG417500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGGACGCGGCGAGCTGTCGCTCAAGGAGAAGCTCCTGCTCGGCGTCGCCCTCGTCACTCTGGTCCCGATACGCGTGGTGGTGATCATGACGCTCCTCCCCTTCTATTACTTGATTTGTAGGATTTGCACGCTCTTCTCTTCTCCGAATCGAGACGAGGACGAGCAAGAGGACTACGCGCACATGGGAGGCTGGAGACGCGCCGTGATTGTTTGGTGCGGCCGATCCTTATCCAGAGTCATGCTCTTCGTCCTAGGTTTTTATTGGATCAGCGAAACCTATCGGATACCAGACCCTGCTCAACAATCCAAGCCTGAGGGAAAAGAGGATAGTGGAGAGGCTGAGAAGCCTGGGGCTATTATATCTAACCATGTATCGTATTTGGATATCTTGTATCACATGTCTTCTTCCTTTCCGAGCTTTGTTGCCAAGAGGTCGGTGGCGAAACTTCCTCTAGTTGGCCTCATCAGCAAGTGCCTCGGTTGTGTCTATGTTCAGCGGGAGTCAAAGTCATCCGACTTCAAGGGTGTTGCAGGTGTTGTGACAGATAGAGTTCGAGAAGCACATCAGAATAAATCTGCACCACAAATTATGCTTTTCCCAGAAGGTACTACTACAAATGGAGACTTTCTTCTGCCATTCAAGACAGGAGCATTTTTGGCTAAAGCTCCGGTGCTTCCAGTGATTCTTAGATATCCTTACCAGAGATTTAGTCCTGCCTGGGACTCGATATCTGGGGTGAGTTTCTTAATATGCAAAATATTAGGACTGTTGGTTTTGGAGAAGTTGCTGAATGTATCTCAAAATATCCTCCGACCACTCCCTTGCCCAGTAAATCTTGAGGGATCCTGTAGTCTCTTTATTTGTTATCTGAGTGGCTTAATGAATCACTGGTTTGAAGCGGAACTGGCAGTCAGTGCTGCTGTTGAAAAAGAGTGTTGGATTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0006082 GO:0006629 GO:0006631 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0012505 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0047184 GO:0050200 GO:0071617 GO:0071618 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 map00564 map00565 map01100

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

316

Amino Acids

35.24

Weight (kDa)

8.27

Isoelectric Point (pI)

49.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	113 - 230	1.7e-18	Acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80950 AT1G80950
fragaria_vesca	FvH4_2g40130 FvH4_2g40130 FvH4_2g40130
malus_domestica	MD08G1032300.v1.1 MD15G1028600.v1.1 MD15G1029000.v1.1
prunus_persica	Prupe.1G382400_v2.0.a1 Prupe.1G382400_v2.0.a1 Prupe.1G382400_v2.0.a1 Prupe.1G382400_v2.0.a1 Prupe.1G382400_v2.0.a1
pyrus_communis	pycom08g02560 pycom15g02570
rosa_chinensis	RchiOBHm_Chr6g0300601
rosa_laevigata	RLG00000011320
rosa_multiflora	Rmu_co8413177.1_g000001 Rmu_co8463661.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167600
rosa_rugosa	Rorug06G0297800 Rorug06G0297900 Rorug06G0298000
rosa_samantha	Rh6AG410400 Rh6BG417500 Rh6CG425100 Rh6DG410600
rosa_wichuraiana	Rw6G035890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	524
Acc36I	ACCTGC	1 cut(s)	524
AccII	CGCG	4 cut(s)	9, 75, 179, 201
AciI	CCGC	4 cut(s)	9, 219, 499, 902
AclWI	GGATC	4 cut(s)	219, 275, 840, 853
AcoI	YGGCCR	1 cut(s)	220
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	1 cut(s)	610
AfiI	CCNNNNNNNGG	1 cut(s)	458
AflIII	ACRYGT	2 cut(s)	73, 399
AgsI	TTSAA	4 cut(s)	523, 643, 899, 929
AjnI	CCWGG	2 cut(s)	349, 719
AluBI	AGCT	4 cut(s)	16, 34, 420, 668
AluI	AGCT	4 cut(s)	16, 34, 420, 668
Alw26I	GTCTC	4 cut(s)	147, 190, 618, 860
AlwI	GGATC	4 cut(s)	219, 275, 840, 853
AlwNI	CAGNNNCTG	1 cut(s)	296
AoxI	GGCC	2 cut(s)	220, 460
ApeKI	GCWGC	1 cut(s)	920
AspA2I	CCTAGG	1 cut(s)	253
AspLEI	GCGC	2 cut(s)	181, 203
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	2 cut(s)	94, 751
AvaII	GGWCC	1 cut(s)	64
AvrII	CCTAGG	1 cut(s)	253
AxyI	CCTNAGG	1 cut(s)	315
BamHI	GGATCC	1 cut(s)	845
BbsI	GAAGAC	1 cut(s)	396
BbvI	GCAGC	1 cut(s)	907
BceAI	ACGGC	1 cut(s)	188
BcgI	CGANNNNNNTGC	2 cut(s)	460, 494
BciT130I	CCWGG	2 cut(s)	351, 721
BciVI	GTATCC	1 cut(s)	279
BclI	TGATCA	1 cut(s)	84
BcoDI	GTCTC	4 cut(s)	147, 190, 618, 860
BfaI	CTAG	2 cut(s)	254, 455
BfmI	CTRYAG	1 cut(s)	850
BfuAI	ACCTGC	1 cut(s)	524
BfuI	GTATCC	1 cut(s)	279
BisI	GCNGC	3 cut(s)	10, 220, 921
BlnI	CCTAGG	1 cut(s)	253
BlsI	GCNGC	3 cut(s)	11, 221, 922
Bme1390I	CCNGG	2 cut(s)	351, 721
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	2 cut(s)	66, 847
BmrFI	CCNGG	2 cut(s)	351, 721
BmrI	ACTGGG	1 cut(s)	824
BmuI	ACTGGG	1 cut(s)	824
BpiI	GAAGAC	1 cut(s)	396
BplI	GAGNNNNNCTC	2 cut(s)	228, 260
BpmI	CTGGAG	1 cut(s)	214
BpuEI	CTTGAG	2 cut(s)	8, 860
BsaBI	GATNNNNATC	1 cut(s)	229
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	4 cut(s)	253, 350, 478, 720
BsaWI	WCCGGW	1 cut(s)	670
BsaXI	ACNNNNNCTCC	2 cut(s)	494, 524
Bsc4I	CCNNNNNNNGG	1 cut(s)	458
Bse1I	ACTGG	4 cut(s)	680, 830, 896, 912
Bse21I	CCTNAGG	1 cut(s)	315
Bse8I	GATNNNNATC	1 cut(s)	229
BseBI	CCWGG	2 cut(s)	351, 721
BseDI	CCNNGG	4 cut(s)	253, 350, 478, 720
BseGI	GGATG	1 cut(s)	512
BseJI	GATNNNNATC	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	458
BseMII	CTCAG	3 cut(s)	306, 333, 863
BseNI	ACTGG	4 cut(s)	680, 830, 896, 912
BseRI	GAGGAG	1 cut(s)	86
BseX3I	CGGCCG	1 cut(s)	220
BseXI	GCAGC	1 cut(s)	907
BsgI	GTGCAG	1 cut(s)	564
Bsh1236I	CGCG	4 cut(s)	9, 75, 179, 201
Bsh1285I	CGRYCG	1 cut(s)	223
BshFI	GGCC	2 cut(s)	222, 462
BsiEI	CGRYCG	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	671
BslFI	GGGAC	3 cut(s)	18, 50, 737
BslI	CCNNNNNNNGG	1 cut(s)	458
BsmAI	GTCTC	4 cut(s)	147, 190, 618, 860
BsmBI	CGTCTC	2 cut(s)	147, 190
BsmFI	GGGAC	3 cut(s)	18, 50, 737
BsnI	GGCC	2 cut(s)	222, 462
Bsp143I	GATC	4 cut(s)	84, 224, 267, 845
BspACI	CCGC	4 cut(s)	9, 219, 499, 902
BspANI	GGCC	2 cut(s)	222, 462
BspCNI	CTCAG	3 cut(s)	307, 334, 864
BspFNI	CGCG	4 cut(s)	9, 75, 179, 201
BspHI	TCATGA	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	66, 847
BspMI	ACCTGC	1 cut(s)	524
BspPI	GGATC	4 cut(s)	219, 275, 840, 853
BspQI	GCTCTTC	2 cut(s)	140, 251
BsrI	ACTGG	4 cut(s)	680, 830, 896, 912
BssECI	CCNNGG	4 cut(s)	253, 350, 478, 720
BssMI	GATC	4 cut(s)	84, 224, 267, 845
BssNI	GRCGYC	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	253
Bst2UI	CCWGG	2 cut(s)	351, 721
Bst4CI	ACNGT	1 cut(s)	771
Bst6I	CTCTTC	3 cut(s)	140, 145, 251
BstACI	GRCGYC	1 cut(s)	45
BstAPI	GCANNNNNTGC	1 cut(s)	917
BstC8I	GCNNGC	2 cut(s)	14, 131
BstDEI	CTNAG	4 cut(s)	315, 342, 689, 872
BstF5I	GGATG	1 cut(s)	512
BstFNI	CGCG	4 cut(s)	9, 75, 179, 201
BstHHI	GCGC	2 cut(s)	181, 203
BstKTI	GATC	4 cut(s)	87, 227, 270, 848
BstMAI	GTCTC	4 cut(s)	147, 190, 618, 860
BstMBI	GATC	4 cut(s)	84, 224, 267, 845
BstMCI	CGRYCG	1 cut(s)	223
BstMWI	GCNNNNNNNGC	5 cut(s)	198, 468, 659, 908, 917
BstNI	CCWGG	2 cut(s)	351, 721
BstNSI	RCATGY	1 cut(s)	403
BstSCI	CCNGG	2 cut(s)	349, 719
BstSFI	CTRYAG	1 cut(s)	850
BstUI	CGCG	4 cut(s)	9, 75, 179, 201
BstV1I	GCAGC	1 cut(s)	907
BstV2I	GAAGAC	1 cut(s)	396
BstX2I	RGATCY	1 cut(s)	845
BstYI	RGATCY	1 cut(s)	845
BstZI	CGGCCG	1 cut(s)	220
Bsu36I	CCTNAGG	1 cut(s)	315
BsuI	GTATCC	1 cut(s)	279
BsuRI	GGCC	2 cut(s)	222, 462
BtsCI	GGATG	1 cut(s)	512
BtsIMutI	CAGTG	3 cut(s)	687, 889, 922
BveI	ACCTGC	1 cut(s)	524
Cac8I	GCNNGC	2 cut(s)	14, 131
CaiI	CAGNNNCTG	1 cut(s)	296
CciI	TCATGA	1 cut(s)	87
CfoI	GCGC	2 cut(s)	181, 203
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	4 cut(s)	15, 34, 100, 207
Csp6I	GTAC	1 cut(s)	609
CviAII	CATG	5 cut(s)	88, 184, 241, 371, 400
CviQI	GTAC	1 cut(s)	609
DdeI	CTNAG	4 cut(s)	315, 342, 689, 872
DpnI	GATC	4 cut(s)	86, 226, 269, 847
DpnII	GATC	4 cut(s)	84, 224, 267, 845
EaeI	YGGCCR	1 cut(s)	220
EagI	CGGCCG	1 cut(s)	220
Eam1104I	CTCTTC	3 cut(s)	140, 145, 251
EarI	CTCTTC	3 cut(s)	140, 145, 251
EclXI	CGGCCG	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	253
Eco32I	GATATC	3 cut(s)	388, 695, 732
Eco47I	GGWCC	1 cut(s)	64
Eco52I	CGGCCG	1 cut(s)	220
Eco81I	CCTNAGG	1 cut(s)	315
EcoRII	CCWGG	2 cut(s)	349, 719
EcoRV	GATATC	3 cut(s)	388, 695, 732
EcoT14I	CCWWGG	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	253
Esp3I	CGTCTC	2 cut(s)	147, 190
FaeI	CATG	5 cut(s)	91, 187, 244, 374, 403
FaqI	GGGAC	3 cut(s)	18, 50, 737
FatI	CATG	5 cut(s)	87, 183, 240, 370, 399
FauI	CCCGC	1 cut(s)	492
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	3 cut(s)	10, 220, 921
FokI	GGATG	1 cut(s)	499
Fsp4HI	GCNGC	3 cut(s)	10, 220, 921
FspBI	CTAG	2 cut(s)	254, 455
GlaI	GCGC	2 cut(s)	180, 202
GluI	GCNGC	3 cut(s)	10, 220, 921
GsuI	CTGGAG	1 cut(s)	214
HaeIII	GGCC	2 cut(s)	222, 462
HapII	CCGG	1 cut(s)	671
HgaI	GACGC	4 cut(s)	15, 34, 100, 207
HhaI	GCGC	2 cut(s)	181, 203
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	5 cut(s)	91, 187, 244, 374, 403
Hin6I	GCGC	2 cut(s)	179, 201
HinP1I	GCGC	2 cut(s)	179, 201
HinfI	GANTC	6 cut(s)	148, 237, 503, 685, 725, 886
HpaII	CCGG	1 cut(s)	671
HphI	GGTGA	2 cut(s)	94, 751
Hpy188I	TCNGA	7 cut(s)	147, 285, 417, 517, 570, 815, 873
Hpy188III	TCNNGA	7 cut(s)	67, 88, 152, 234, 557, 643, 839
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	2 cut(s)	112, 599
HpyCH4III	ACNGT	1 cut(s)	771
HpyCH4V	TGCA	4 cut(s)	129, 533, 581, 756
HpyF10VI	GCNNNNNNNGC	5 cut(s)	198, 468, 659, 908, 917
HpyF3I	CTNAG	4 cut(s)	315, 342, 689, 872
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	5 cut(s)	91, 187, 244, 374, 403
HspAI	GCGC	2 cut(s)	179, 201
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	4 cut(s)	84, 224, 267, 845
LguI	GCTCTTC	2 cut(s)	140, 251
LmnI	GCTCC	4 cut(s)	39, 99, 650, 673
Lsp1109I	GCAGC	1 cut(s)	907
MaeI	CTAG	2 cut(s)	254, 455
MaeIII	GTNAC	2 cut(s)	55, 541
MalI	GATC	4 cut(s)	86, 226, 269, 847
MboI	GATC	4 cut(s)	84, 224, 267, 845
MboII	GAAGA	6 cut(s)	127, 132, 238, 396, 399, 623
MflI	RGATCY	1 cut(s)	845
MluCI	AATT	1 cut(s)	588
MluI	ACGCGT	1 cut(s)	73
MlyI	GAGTC	3 cut(s)	246, 512, 719
MmeI	TCCRAC	3 cut(s)	540, 838, 920
MseI	TTAA	2 cut(s)	749, 881
MspA1I	CMGCKG	1 cut(s)	499
MspI	CCGG	1 cut(s)	671
MspR9I	CCNGG	2 cut(s)	351, 721
MvaI	CCWGG	2 cut(s)	351, 721
MvnI	CGCG	4 cut(s)	9, 75, 179, 201
MwoI	GCNNNNNNNGC	5 cut(s)	198, 468, 659, 908, 917
NdeII	GATC	4 cut(s)	84, 224, 267, 845
NlaIII	CATG	5 cut(s)	91, 187, 244, 374, 403
NlaIV	GGNNCC	2 cut(s)	66, 847
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	2 cut(s)	55, 541
NspI	RCATGY	1 cut(s)	403
PagI	TCATGA	1 cut(s)	87
PaqCI	CACCTGC	1 cut(s)	524
PciI	ACATGT	1 cut(s)	399
PciSI	GCTCTTC	2 cut(s)	140, 251
PfeI	GAWTC	3 cut(s)	148, 685, 886
PkrI	GCNGC	3 cut(s)	11, 221, 922
PleI	GAGTC	3 cut(s)	245, 511, 719
PpsI	GAGTC	3 cut(s)	245, 511, 719
PscI	ACATGT	1 cut(s)	399
Psp6I	CCWGG	2 cut(s)	349, 719
PspGI	CCWGG	2 cut(s)	349, 719
PspN4I	GGNNCC	2 cut(s)	66, 847
PspPI	GGNCC	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	845
RsaI	GTAC	1 cut(s)	610
RsaNI	GTAC	1 cut(s)	609
SapI	GCTCTTC	2 cut(s)	140, 251
SaqAI	TTAA	2 cut(s)	749, 881
SatI	GCNGC	3 cut(s)	10, 220, 921
Sau3AI	GATC	4 cut(s)	84, 224, 267, 845
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	3 cut(s)	246, 512, 719
ScrFI	CCNGG	2 cut(s)	351, 721
SetI	ASST	9 cut(s)	18, 36, 259, 281, 422, 437, 538, 610, 670
SfcI	CTRYAG	1 cut(s)	850
SinI	GGWCC	1 cut(s)	64
SmlI	CTYRAG	2 cut(s)	23, 839
SmoI	CTYRAG	2 cut(s)	23, 839
Sse9I	AATT	1 cut(s)	588
SsiI	CCGC	4 cut(s)	9, 219, 499, 902
SspI	AATATT	1 cut(s)	762
SspMI	CTAG	2 cut(s)	254, 455
StyD4I	CCNGG	2 cut(s)	349, 719
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	1 cut(s)	771
TaqI	TCGA	3 cut(s)	151, 556, 728
TasI	AATT	1 cut(s)	588
TauI	GCSGC	2 cut(s)	12, 222
TfiI	GAWTC	3 cut(s)	148, 685, 886
Tru1I	TTAA	2 cut(s)	749, 881
Tru9I	TTAA	2 cut(s)	749, 881
TscAI	CASTG	3 cut(s)	687, 896, 922
TseFI	GTSAC	2 cut(s)	55, 541
TseI	GCWGC	1 cut(s)	920
Tsp45I	GTSAC	2 cut(s)	55, 541
TspDTI	ATGAA	1 cut(s)	899
TspRI	CASTG	3 cut(s)	687, 896, 922
VpaK11BI	GGWCC	1 cut(s)	64
XceI	RCATGY	1 cut(s)	403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	436
XmaJI	CCTAGG	1 cut(s)	253
XspI	CTAG	2 cut(s)	254, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.