Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0005846

Physical Location & Seq

Genomic Coordinates Forward (+)

1886158 .. 1888060

Gene Structure 1903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g02560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTCTAATTCGTTTCCGAGCTTCGTTGCCAAGAGATCGGTGGCGAAACTTCCTCTAGTTGGCCTCATCAGCAAGTGCCTCGGTTGTGTCTATGTTCAGCGAGAGTCAAAGTCATCCAACTTCAAGGGAGTTGCAGGTGCTGTGACTGAAAGAGTTAAAGAAGCACATCAGAATAAATCCGCCCCGCCGATAATGCTTTTCCCAGAGGGAACTACCACAAACGGAGACTTTCTTCTGCCATTCAAGACGGGAGCATTCCTGGCAAAAGCTCCAGTTCTTCCAGTGATTATTAGGTATCCTTACCACAGATTTAGTCCTGCATGGGACTCGATATCTGGGGTGCGCCATGTGATATTTCTTCTCTGTCAATTTGTAAATCACATAGAGGTCACGAGGTTACCTGTTTATTACCCCTCACAACAAGAAAAGGATGATCCAAAACTCTACGCTAGTAATGTCAGAAGATTGATGTCCCATGAGGGCAACATGACTTTATCAGATATTGGACTTGCCGAGAAGCGGGTGTATCATGCTGCTCTTAATGGTTTGTTTTCCCAATGGAAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0006082 GO:0006629 GO:0006631 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0012505 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0047184 GO:0050200 GO:0071617 GO:0071618 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 map00564 map00565 map01100

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

190

Amino Acids

21.14

Weight (kDa)

9.68

Isoelectric Point (pI)

49.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80950 AT1G80950
fragaria_vesca	FvH4_2g40130 FvH4_2g40130 FvH4_2g40130
malus_domestica	MD08G1032300.v1.1 MD15G1028600.v1.1 MD15G1029000.v1.1
prunus_persica	Prupe.1G382400_v2.0.a1 Prupe.1G382400_v2.0.a1 Prupe.1G382400_v2.0.a1 Prupe.1G382400_v2.0.a1 Prupe.1G382400_v2.0.a1
pyrus_communis	pycom08g02560 pycom15g02570
rosa_chinensis	RchiOBHm_Chr6g0300601
rosa_laevigata	RLG00000011320
rosa_multiflora	Rmu_co8413177.1_g000001 Rmu_co8463661.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167600
rosa_rugosa	Rorug06G0297800 Rorug06G0297900 Rorug06G0298000
rosa_samantha	Rh6AG410400 Rh6BG417500 Rh6CG425100 Rh6DG410600
rosa_wichuraiana	Rw6G035890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	125
Acc36I	ACCTGC	1 cut(s)	125
AciI	CCGC	3 cut(s)	180, 185, 520
AclWI	GGATC	1 cut(s)	428
AfiI	CCNNNNNNNGG	2 cut(s)	59, 519
AgsI	TTSAA	2 cut(s)	124, 244
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	2 cut(s)	21, 269
AluI	AGCT	2 cut(s)	21, 269
Alw26I	GTCTC	1 cut(s)	219
AlwI	GGATC	1 cut(s)	428
AlwNI	CAGNNNCTG	1 cut(s)	140
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	533
AspLEI	GCGC	1 cut(s)	345
BauI	CACGAG	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	520
BcgI	CGANNNNNNTGC	4 cut(s)	61, 95, 309, 343
BciT130I	CCWGG	1 cut(s)	260
BciVI	GTATCC	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	219
BfaI	CTAG	2 cut(s)	56, 450
BfuAI	ACCTGC	1 cut(s)	125
BfuI	GTATCC	1 cut(s)	306
BisI	GCNGC	1 cut(s)	534
BlsI	GCNGC	1 cut(s)	535
Bme1390I	CCNGG	1 cut(s)	260
BmrFI	CCNGG	1 cut(s)	260
BpmI	CTGGAG	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 519
Bse1I	ACTGG	2 cut(s)	272, 281
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	79
BseGI	GGATG	2 cut(s)	113, 436
BseLI	CCNNNNNNNGG	2 cut(s)	59, 519
BseNI	ACTGG	2 cut(s)	272, 281
BseXI	GCAGC	1 cut(s)	520
BshFI	GGCC	1 cut(s)	63
BslFI	GGGAC	2 cut(s)	338, 457
BslI	CCNNNNNNNGG	2 cut(s)	59, 519
BsmAI	GTCTC	1 cut(s)	219
BsmFI	GGGAC	2 cut(s)	338, 457
BsmI	GAATGC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	63
Bsp143I	GATC	2 cut(s)	35, 433
BspACI	CCGC	3 cut(s)	180, 185, 520
BspANI	GGCC	1 cut(s)	63
BspMI	ACCTGC	1 cut(s)	125
BspPI	GGATC	1 cut(s)	428
BsrI	ACTGG	2 cut(s)	272, 281
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	2 cut(s)	35, 433
BssSI	CACGAG	1 cut(s)	391
Bst2BI	CACGAG	1 cut(s)	391
Bst2UI	CCWGG	1 cut(s)	260
BstEII	GGTNACC	1 cut(s)	396
BstF5I	GGATG	2 cut(s)	113, 436
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	2 cut(s)	38, 436
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	2 cut(s)	35, 433
BstMWI	GCNNNNNNNGC	3 cut(s)	69, 193, 260
BstNI	CCWGG	1 cut(s)	260
BstPI	GGTNACC	1 cut(s)	396
BstSCI	CCNGG	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	520
BsuI	GTATCC	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	63
BtsCI	GGATG	2 cut(s)	113, 436
BtsIMutI	CAGTG	1 cut(s)	288
BveI	ACCTGC	1 cut(s)	125
CaiI	CAGNNNCTG	1 cut(s)	140
CfoI	GCGC	1 cut(s)	345
CviAII	CATG	5 cut(s)	321, 347, 476, 487, 530
CviJI	RGCY	3 cut(s)	21, 63, 269
CviKI_1	RGCY	3 cut(s)	21, 63, 269
DpnI	GATC	2 cut(s)	37, 435
DpnII	GATC	2 cut(s)	35, 433
EciI	GGCGGA	1 cut(s)	169
Eco32I	GATATC	1 cut(s)	333
Eco91I	GGTNACC	1 cut(s)	396
EcoO65I	GGTNACC	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	258
EcoRV	GATATC	1 cut(s)	333
FaeI	CATG	5 cut(s)	324, 350, 479, 490, 533
FaiI	YATR	7 cut(s)	93, 322, 348, 383, 477, 488, 531
FaqI	GGGAC	2 cut(s)	338, 457
FatI	CATG	5 cut(s)	320, 346, 475, 486, 529
FauI	CCCGC	2 cut(s)	192, 513
Fnu4HI	GCNGC	1 cut(s)	534
FokI	GGATG	2 cut(s)	100, 443
Fsp4HI	GCNGC	1 cut(s)	534
FspBI	CTAG	2 cut(s)	56, 450
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	1 cut(s)	534
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	63
HhaI	GCGC	1 cut(s)	345
Hin1II	CATG	5 cut(s)	324, 350, 479, 490, 533
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HinfI	GANTC	2 cut(s)	104, 326
Hpy188I	TCNGA	4 cut(s)	18, 171, 461, 499
Hpy188III	TCNNGA	2 cut(s)	244, 391
HpyCH4V	TGCA	2 cut(s)	134, 320
HpyF10VI	GCNNNNNNNGC	3 cut(s)	69, 193, 260
Hsp92II	CATG	5 cut(s)	324, 350, 479, 490, 533
HspAI	GCGC	1 cut(s)	343
Kzo9I	GATC	2 cut(s)	35, 433
LmnI	GCTCC	2 cut(s)	251, 274
LpnPI	CCDG	9 cut(s)	120, 216, 245, 272, 285, 294, 321, 330, 414
Lsp1109I	GCAGC	1 cut(s)	520
MaeI	CTAG	2 cut(s)	56, 450
MaeIII	GTNAC	3 cut(s)	142, 388, 396
MalI	GATC	2 cut(s)	37, 435
MboI	GATC	2 cut(s)	35, 433
MboII	GAAGA	4 cut(s)	224, 269, 350, 474
MluCI	AATT	3 cut(s)	7, 368, 565
MlyI	GAGTC	2 cut(s)	113, 320
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	8 cut(s)	63, 74, 89, 199, 379, 387, 424, 472
MseI	TTAA	3 cut(s)	156, 540, 568
MspR9I	CCNGG	1 cut(s)	260
Mva1269I	GAATGC	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	3 cut(s)	69, 193, 260
NdeII	GATC	2 cut(s)	35, 433
NlaIII	CATG	5 cut(s)	324, 350, 479, 490, 533
NmeAIII	GCCGAG	1 cut(s)	538
NmuCI	GTSAC	2 cut(s)	142, 388
PaqCI	CACCTGC	1 cut(s)	125
PctI	GAATGC	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	535
PleI	GAGTC	2 cut(s)	112, 320
PpsI	GAGTC	2 cut(s)	112, 320
Psp6I	CCWGG	1 cut(s)	258
PspEI	GGTNACC	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	258
PstNI	CAGNNNCTG	1 cut(s)	140
SaqAI	TTAA	3 cut(s)	156, 540, 568
SatI	GCNGC	1 cut(s)	534
Sau3AI	GATC	2 cut(s)	35, 433
SchI	GAGTC	2 cut(s)	113, 320
ScrFI	CCNGG	1 cut(s)	260
SetI	ASST	7 cut(s)	23, 139, 271, 296, 390, 398, 403
Sse9I	AATT	3 cut(s)	7, 368, 565
SsiI	CCGC	3 cut(s)	180, 185, 520
SspMI	CTAG	2 cut(s)	56, 450
StyD4I	CCNGG	1 cut(s)	258
TaqI	TCGA	1 cut(s)	329
TasI	AATT	3 cut(s)	7, 368, 565
Tru1I	TTAA	3 cut(s)	156, 540, 568
Tru9I	TTAA	3 cut(s)	156, 540, 568
TscAI	CASTG	1 cut(s)	288
TseFI	GTSAC	2 cut(s)	142, 388
TseI	GCWGC	1 cut(s)	533
Tsp45I	GTSAC	2 cut(s)	142, 388
TspGWI	ACGGA	1 cut(s)	237
TspRI	CASTG	1 cut(s)	288
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XspI	CTAG	2 cut(s)	56, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.