Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005846

Physical Location & Seq

Genomic Coordinates Forward (+)

45081728 .. 45082180

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0297900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGAACACCAAAACGATGCGTTTGCCGCCACGTCGGATATCGACGACCAATGCGTCATCAAATAGCAACTCCCCCACCACCAAGCGCAAGGAGAGAGAGAGTGCGCTCGACGCGCCCCACCCAGCCAAGGCTCTCAAGCTGTCCCCCACCGAGCCGGCTCATCAAGCCGCCGTATCCGAGCCGGCTCTGGCCTCCGGTGGTCATCTCCTAGCTGGCTATTTGGCCCATGAATTCCTCACCAAGGGCACCCTCCTCGGGCAGCTGTGGGACCCGACCGCCCGATCTTCCGCCGACGAGCAACCGGTCACGAAATCCCCAGATCGGCGCGAAGCCGAGCCGCAGTACGAGAAGCTGGAGAGGTACGTGGAAGTAGCTGATTTGCTGAAGACGGATGGAGCTCAGTTAGCTGGCATTGTCAACCCTACTCAGCTTGCACGCTTTTTACAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0006082 GO:0006629 GO:0006631 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0012505 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0047184 GO:0050200 GO:0071617 GO:0071618 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 map00564 map00565 map01100

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

150

Amino Acids

16.34

Weight (kDa)

8.96

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80950 AT1G80950
fragaria_vesca	FvH4_2g40130 FvH4_2g40130 FvH4_2g40130
malus_domestica	MD08G1032300.v1.1 MD15G1028600.v1.1 MD15G1029000.v1.1
prunus_persica	Prupe.1G382400_v2.0.a1 Prupe.1G382400_v2.0.a1 Prupe.1G382400_v2.0.a1 Prupe.1G382400_v2.0.a1 Prupe.1G382400_v2.0.a1
pyrus_communis	pycom08g02560 pycom15g02570
rosa_chinensis	RchiOBHm_Chr6g0300601
rosa_laevigata	RLG00000011320
rosa_multiflora	Rmu_co8413177.1_g000001 Rmu_co8463661.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167600
rosa_rugosa	Rorug06G0297800 Rorug06G0297900 Rorug06G0298000
rosa_samantha	Rh6AG410400 Rh6BG417500 Rh6CG425100 Rh6DG410600
rosa_wichuraiana	Rw6G035890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	52
AccB1I	GGYRCC	1 cut(s)	245
AccII	CGCG	2 cut(s)	113, 327
AciI	CCGC	5 cut(s)	26, 168, 276, 288, 338
AcsI	RAATTY	1 cut(s)	230
AcuI	CTGAAG	1 cut(s)	404
AfaI	GTAC	2 cut(s)	344, 362
AfiI	CCNNNNNNNGG	4 cut(s)	127, 241, 255, 321
AgeI	ACCGGT	1 cut(s)	301
AjiI	CACGTC	1 cut(s)	32
AluBI	AGCT	8 cut(s)	139, 212, 262, 352, 374, 398, 407, 430
AluI	AGCT	8 cut(s)	139, 212, 262, 352, 374, 398, 407, 430
Alw21I	GWGCWC	1 cut(s)	400
Ama87I	CYCGRG	1 cut(s)	254
AoxI	GGCC	2 cut(s)	189, 222
ApeKI	GCWGC	1 cut(s)	259
ApoI	RAATTY	1 cut(s)	230
AsiGI	ACCGGT	1 cut(s)	301
AspLEI	GCGC	4 cut(s)	87, 106, 115, 327
AspS9I	GGNCC	2 cut(s)	223, 268
AsuHPI	GGTGA	1 cut(s)	229
AvaI	CYCGRG	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	268
BaeGI	GKGCMC	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	400
BbsI	GAAGAC	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	400
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	1 cut(s)	386
BceAI	ACGGC	1 cut(s)	155
BcgI	CGANNNNNNTGC	4 cut(s)	4, 38, 235, 269
BciVI	GTATCC	1 cut(s)	184
BfaI	CTAG	1 cut(s)	209
BfuI	GTATCC	1 cut(s)	184
BisI	GCNGC	4 cut(s)	26, 168, 260, 338
BlsI	GCNGC	4 cut(s)	27, 169, 261, 339
Bme18I	GGWCC	1 cut(s)	268
BmeT110I	CYCGRG	1 cut(s)	254
BmgBI	CACGTC	1 cut(s)	32
BmgT120I	GGNCC	2 cut(s)	223, 268
BmiI	GGNNCC	3 cut(s)	247, 269, 270
BmsI	GCATC	1 cut(s)	6
BpiI	GAAGAC	1 cut(s)	392
BpmI	CTGGAG	1 cut(s)	374
BpuEI	CTTGAG	1 cut(s)	119
BsaAI	YACGTR	1 cut(s)	364
BsaJI	CCNNGG	3 cut(s)	126, 240, 253
BsaWI	WCCGGW	2 cut(s)	194, 301
Bsc4I	CCNNNNNNNGG	4 cut(s)	127, 241, 255, 321
Bse118I	RCCGGY	3 cut(s)	154, 181, 301
BseDI	CCNNGG	3 cut(s)	126, 240, 253
BseGI	GGATG	1 cut(s)	397
BseLI	CCNNNNNNNGG	4 cut(s)	127, 241, 255, 321
BseMII	CTCAG	2 cut(s)	413, 440
BseRI	GAGGAG	1 cut(s)	242
BseSI	GKGCMC	1 cut(s)	248
BseXI	GCAGC	1 cut(s)	271
BseYI	CCCAGC	1 cut(s)	121
Bsh1236I	CGCG	2 cut(s)	113, 327
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	2 cut(s)	191, 224
BshNI	GGYRCC	1 cut(s)	245
BshTI	ACCGGT	1 cut(s)	301
BsiEI	CGRYCG	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	400
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	4 cut(s)	155, 182, 195, 302
BslFI	GGGAC	2 cut(s)	127, 281
BslI	CCNNNNNNNGG	4 cut(s)	127, 241, 255, 321
BsmFI	GGGAC	2 cut(s)	127, 281
BsnI	GGCC	2 cut(s)	191, 224
BsoBI	CYCGRG	1 cut(s)	254
Bsp1286I	GDGCHC	2 cut(s)	248, 400
Bsp143I	GATC	2 cut(s)	281, 319
BspACI	CCGC	5 cut(s)	26, 168, 276, 288, 338
BspANI	GGCC	2 cut(s)	191, 224
BspCNI	CTCAG	2 cut(s)	412, 439
BspFNI	CGCG	2 cut(s)	113, 327
BspLI	GGNNCC	3 cut(s)	247, 269, 270
BspT107I	GGYRCC	1 cut(s)	245
BsrFI	RCCGGY	3 cut(s)	154, 181, 301
BssAI	RCCGGY	3 cut(s)	154, 181, 301
BssECI	CCNNGG	3 cut(s)	126, 240, 253
BssMI	GATC	2 cut(s)	281, 319
BssT1I	CCWWGG	2 cut(s)	126, 240
Bst4CI	ACNGT	1 cut(s)	447
BstBAI	YACGTR	1 cut(s)	364
BstC8I	GCNNGC	6 cut(s)	156, 183, 214, 409, 432, 436
BstDEI	CTNAG	2 cut(s)	399, 426
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	397
BstFNI	CGCG	2 cut(s)	113, 327
BstHHI	GCGC	4 cut(s)	87, 106, 115, 327
BstKTI	GATC	2 cut(s)	284, 322
BstMBI	GATC	2 cut(s)	281, 319
BstMCI	CGRYCG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	5 cut(s)	25, 110, 112, 164, 404
BstSLI	GKGCMC	1 cut(s)	248
BstUI	CGCG	2 cut(s)	113, 327
BstV1I	GCAGC	1 cut(s)	271
BstV2I	GAAGAC	1 cut(s)	392
BsuI	GTATCC	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	191, 224
BtrI	CACGTC	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	397
Cac8I	GCNNGC	6 cut(s)	156, 183, 214, 409, 432, 436
CfoI	GCGC	4 cut(s)	87, 106, 115, 327
Cfr10I	RCCGGY	3 cut(s)	154, 181, 301
Cfr13I	GGNCC	2 cut(s)	223, 268
CseI	GACGC	2 cut(s)	42, 119
Csp6I	GTAC	2 cut(s)	343, 361
CspAI	ACCGGT	1 cut(s)	301
CviAII	CATG	1 cut(s)	227
CviQI	GTAC	2 cut(s)	343, 361
DdeI	CTNAG	2 cut(s)	399, 426
DpnI	GATC	2 cut(s)	283, 321
DpnII	GATC	2 cut(s)	281, 319
DrdI	GACNNNNNNGTC	1 cut(s)	52
DseDI	GACNNNNNNGTC	1 cut(s)	52
EciI	GGCGGA	1 cut(s)	277
Ecl136II	GAGCTC	1 cut(s)	398
Eco130I	CCWWGG	2 cut(s)	126, 240
Eco24I	GRGCYC	1 cut(s)	400
Eco32I	GATATC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	268
Eco53kI	GAGCTC	1 cut(s)	398
Eco57I	CTGAAG	1 cut(s)	404
Eco88I	CYCGRG	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	398
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	230
EcoRV	GATATC	1 cut(s)	39
EcoT14I	CCWWGG	2 cut(s)	126, 240
EcoT38I	GRGCYC	1 cut(s)	400
ErhI	CCWWGG	2 cut(s)	126, 240
FaeI	CATG	1 cut(s)	230
FaiI	YATR	1 cut(s)	228
FaqI	GGGAC	2 cut(s)	127, 281
FatI	CATG	1 cut(s)	226
Fnu4HI	GCNGC	4 cut(s)	26, 168, 260, 338
FokI	GGATG	1 cut(s)	404
FriOI	GRGCYC	1 cut(s)	400
Fsp4HI	GCNGC	4 cut(s)	26, 168, 260, 338
FspBI	CTAG	1 cut(s)	209
GlaI	GCGC	4 cut(s)	86, 105, 114, 326
GluI	GCNGC	4 cut(s)	26, 168, 260, 338
GsaI	CCCAGC	1 cut(s)	125
GsuI	CTGGAG	1 cut(s)	374
HaeIII	GGCC	2 cut(s)	191, 224
HapII	CCGG	4 cut(s)	155, 182, 195, 302
HgaI	GACGC	2 cut(s)	42, 119
HhaI	GCGC	4 cut(s)	87, 106, 115, 327
Hin1II	CATG	1 cut(s)	230
Hin6I	GCGC	4 cut(s)	85, 104, 113, 325
HinP1I	GCGC	4 cut(s)	85, 104, 113, 325
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HpaII	CCGG	4 cut(s)	155, 182, 195, 302
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	2 cut(s)	36, 178
Hpy188III	TCNNGA	1 cut(s)	307
Hpy8I	GTNNAC	1 cut(s)	418
Hpy99I	CGWCG	4 cut(s)	36, 46, 113, 296
HpyCH4III	ACNGT	1 cut(s)	447
HpyCH4IV	ACGT	2 cut(s)	31, 363
HpyCH4V	TGCA	1 cut(s)	434
HpyF10VI	GCNNNNNNNGC	5 cut(s)	25, 110, 112, 164, 404
HpyF3I	CTNAG	2 cut(s)	399, 426
HpySE526I	ACGT	2 cut(s)	31, 363
Hsp92II	CATG	1 cut(s)	230
HspAI	GCGC	4 cut(s)	85, 104, 113, 325
KflI	GGGWCCC	1 cut(s)	268
KroI	GCCGGC	2 cut(s)	154, 181
KroNI	GCCGGC	2 cut(s)	156, 183
Kzo9I	GATC	2 cut(s)	281, 319
LmnI	GCTCC	1 cut(s)	395
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	1 cut(s)	6
MaeI	CTAG	1 cut(s)	209
MaeII	ACGT	2 cut(s)	31, 363
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	2 cut(s)	283, 321
MboI	GATC	2 cut(s)	281, 319
MboII	GAAGA	2 cut(s)	276, 397
MhlI	GDGCHC	2 cut(s)	248, 400
MluCI	AATT	1 cut(s)	230
MmeI	TCCRAC	1 cut(s)	14
MnlI	CCTC	5 cut(s)	202, 245, 260, 263, 351
MroNI	GCCGGC	2 cut(s)	154, 181
MspA1I	CMGCKG	1 cut(s)	262
MspI	CCGG	4 cut(s)	155, 182, 195, 302
MvnI	CGCG	2 cut(s)	113, 327
MwoI	GCNNNNNNNGC	5 cut(s)	25, 110, 112, 164, 404
NaeI	GCCGGC	2 cut(s)	156, 183
NdeII	GATC	2 cut(s)	281, 319
NgoMIV	GCCGGC	2 cut(s)	154, 181
NlaIII	CATG	1 cut(s)	230
NlaIV	GGNNCC	3 cut(s)	247, 269, 270
NmeAIII	GCCGAG	1 cut(s)	358
NmuCI	GTSAC	1 cut(s)	304
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PdiI	GCCGGC	2 cut(s)	156, 183
PinAI	ACCGGT	1 cut(s)	301
PkrI	GCNGC	4 cut(s)	27, 169, 261, 339
Ppu21I	YACGTR	1 cut(s)	364
PpuMI	RGGWCCY	1 cut(s)	268
Psp124BI	GAGCTC	1 cut(s)	400
Psp5II	RGGWCCY	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	121
PspN4I	GGNNCC	3 cut(s)	247, 269, 270
PspPI	GGNCC	2 cut(s)	223, 268
PspPPI	RGGWCCY	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	262
RsaI	GTAC	2 cut(s)	344, 362
RsaNI	GTAC	2 cut(s)	343, 361
SacI	GAGCTC	1 cut(s)	400
SatI	GCNGC	4 cut(s)	26, 168, 260, 338
Sau3AI	GATC	2 cut(s)	281, 319
Sau96I	GGNCC	2 cut(s)	223, 268
SduI	GDGCHC	2 cut(s)	248, 400
SfaNI	GCATC	1 cut(s)	6
SinI	GGWCC	1 cut(s)	268
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	1 cut(s)	230
SsiI	CCGC	5 cut(s)	26, 168, 276, 288, 338
SspMI	CTAG	1 cut(s)	209
SstI	GAGCTC	1 cut(s)	400
StyI	CCWWGG	2 cut(s)	126, 240
TaaI	ACNGT	1 cut(s)	447
TaiI	ACGT	2 cut(s)	34, 366
TaqI	TCGA	2 cut(s)	41, 108
TasI	AATT	1 cut(s)	230
TauI	GCSGC	3 cut(s)	28, 170, 340
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	1 cut(s)	259
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	17, 243
TspGWI	ACGGA	1 cut(s)	404
VpaK11BI	GGWCC	1 cut(s)	268
XagI	CCTNNNNNAGG	1 cut(s)	239
XapI	RAATTY	1 cut(s)	230
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.