Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005846

Physical Location & Seq

Genomic Coordinates Forward (+)

45082328 .. 45084295

Gene Structure 1968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0298000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGTTGTATCTCATTCGAATCCAAGAACAGATATATGCACAATTTCCTCATAAATTATTCTCTGTCAATAATCAATATTCAAGCTATGCAATTGATCATAAACACCTGGTGTGCTCACTCACTCAGACTGATTCGAAAGGCACCACAAAAATGCTGCGCCTTCAAATTTGTCACCCACCCATGTTGCACGGCCCTTCTCTACTCTGCACCCGCGCTCCGATATCCCTTTCTTGCCGCGCCGTTTCGAGAAAGTCCGATTCGGAGCCCGACCCGGACCGACCCAAGCCAAAACCCCGGCGCCGGAAAACCGCGGACGGCGGAAATGAAGGCGGAGAAAAAGACCAGCCTTTCACGATTCCGAGGAAGACCCGGCGCGGGCGGAGGAGCGAGGCGGCGGCGGTGCAGGATTACGTGAGGGACACAATCAACCGGACGTTTAAGACAATCCAGGAGCAGAACCCGGAGATTTTCGAGAAGAAGGGAGAATTGATGAAGGAGAAAGCTGCCGCCGTTGACGGCGGCGACGGCGACGGCGACGAGGGGAGTGAGAGAGAGGAGACGGCGGTGGTGGAGGAGGAGACGGAGAATTGGCCGCTGGATGCGGAGGTGGGGTGGGGGATTAGGGCGTCGGAGTATTTTGAGAAGCACGCGATTCGGAACGTGGTGGATGAAAATGGGGTTGAGATTGATTGGGAAGGAGAGGTTGAGGATAATTGGGTCAAGGAGATTAATTGCTTGGAGTGGGAAAGCTTTGCTTTTCATCCCAGTCCGCTTGTTGTCTTTGTTTTCGAGAGGTATAACAGAGCAGCTGAGAATTGGAAGGCTTTGAAGGAGCTTGAGAAGGCTGTCAAGGTGTATTGGGATGCCAAAGATCGGCTGCCTCCGAGGTCTGTGAAGATAGACATGAATATCGAGAGGGATTTGGCGTATGCTTTGAAGGTTAGAGACTGTCCTCAGGTTTTGTTTCTGAGAGGGAACAGGATCTTGTACAGAGAGAAAGAGATTCGGACGGCGGACGAATTGGTTGCCATGATTGCGCATTTCTACTACAATGCAAAGAGGCCGCCCTGGATTGATGTGAAGGAGCTAACTCTGCCGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0006082 GO:0006629 GO:0006631 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0012505 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0047184 GO:0050200 GO:0071617 GO:0071618 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 map00564 map00565 map01100

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

367

Amino Acids

42.5

Weight (kDa)

6.02

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80950 AT1G80950
fragaria_vesca	FvH4_2g40130 FvH4_2g40130 FvH4_2g40130
malus_domestica	MD08G1032300.v1.1 MD15G1028600.v1.1 MD15G1029000.v1.1
prunus_persica	Prupe.1G382400_v2.0.a1 Prupe.1G382400_v2.0.a1 Prupe.1G382400_v2.0.a1 Prupe.1G382400_v2.0.a1 Prupe.1G382400_v2.0.a1
pyrus_communis	pycom08g02560 pycom15g02570
rosa_chinensis	RchiOBHm_Chr6g0300601
rosa_laevigata	RLG00000011320
rosa_multiflora	Rmu_co8413177.1_g000001 Rmu_co8463661.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167600
rosa_rugosa	Rorug06G0297800 Rorug06G0297900 Rorug06G0298000
rosa_samantha	Rh6AG410400 Rh6BG417500 Rh6CG425100 Rh6DG410600
rosa_wichuraiana	Rw6G035890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1038
AccB1I	GGYRCC	2 cut(s)	140, 297
AccII	CGCG	5 cut(s)	213, 237, 311, 375, 650
AclWI	GGATC	1 cut(s)	989
AcoI	YGGCCR	1 cut(s)	590
AcsI	RAATTY	1 cut(s)	165
AcyI	GRCGYC	2 cut(s)	298, 626
AdeI	CACNNNGTG	1 cut(s)	109
AfaI	GTAC	2 cut(s)	989, 1100
AfiI	CCNNNNNNNGG	3 cut(s)	300, 375, 873
AgsI	TTSAA	4 cut(s)	81, 164, 829, 937
AjnI	CCWGG	3 cut(s)	105, 447, 1067
AluBI	AGCT	6 cut(s)	84, 503, 750, 809, 835, 1087
AluI	AGCT	6 cut(s)	84, 503, 750, 809, 835, 1087
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	3 cut(s)	551, 572, 939
AlwI	GGATC	1 cut(s)	989
AoxI	GGCC	3 cut(s)	190, 590, 1061
ApeKI	GCWGC	4 cut(s)	154, 503, 806, 877
ApoI	RAATTY	1 cut(s)	165
AseI	ATTAAT	1 cut(s)	729
AspLEI	GCGC	6 cut(s)	159, 215, 239, 300, 375, 1039
AspS9I	GGNCC	2 cut(s)	191, 274
AsuC2I	CCSGG	4 cut(s)	272, 295, 370, 461
AsuHPI	GGTGA	1 cut(s)	164
AsuII	TTCGAA	2 cut(s)	16, 134
AvaII	GGWCC	1 cut(s)	274
AxyI	CCTNAGG	1 cut(s)	954
BanI	GGYRCC	2 cut(s)	140, 297
BanII	GRGCYC	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	4 cut(s)	141, 490, 818, 864
BcgI	CGANNNNNNTGC	4 cut(s)	635, 669, 1007, 1041
BciT130I	CCWGG	3 cut(s)	107, 449, 1069
BclI	TGATCA	1 cut(s)	94
BcnI	CCSGG	4 cut(s)	272, 295, 370, 461
BcoDI	GTCTC	3 cut(s)	551, 572, 939
BfaI	CTAG	1 cut(s)	1102
BfoI	RGCGCY	1 cut(s)	301
Bme1390I	CCNGG	7 cut(s)	107, 272, 295, 370, 449, 461, 1069
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	2 cut(s)	191, 274
BmiI	GGNNCC	3 cut(s)	142, 264, 299
BmrFI	CCNGG	7 cut(s)	107, 272, 295, 370, 449, 461, 1069
BmrI	ACTGGG	1 cut(s)	759
BmsI	GCATC	2 cut(s)	589, 853
BmuI	ACTGGG	1 cut(s)	759
BpiI	GAAGAC	1 cut(s)	371
Bpu14I	TTCGAA	2 cut(s)	16, 134
BpuEI	CTTGAG	1 cut(s)	857
BpuMI	CCSGG	4 cut(s)	272, 295, 370, 461
BsaAI	YACGTR	1 cut(s)	412
BsaHI	GRCGYC	2 cut(s)	298, 626
BsaJI	CCNNGG	5 cut(s)	293, 309, 359, 884, 1067
BsaWI	WCCGGW	1 cut(s)	429
BsaXI	ACNNNNNCTCC	4 cut(s)	199, 229, 596, 626
Bsc4I	CCNNNNNNNGG	3 cut(s)	300, 375, 873
Bse1I	ACTGG	1 cut(s)	765
Bse21I	CCTNAGG	1 cut(s)	954
BseBI	CCWGG	3 cut(s)	107, 449, 1069
BseDI	CCNNGG	5 cut(s)	293, 309, 359, 884, 1067
BseGI	GGATG	4 cut(s)	604, 673, 760, 868
BseLI	CCNNNNNNNGG	3 cut(s)	300, 375, 873
BseMII	CTCAG	4 cut(s)	137, 801, 959, 968
BseNI	ACTGG	1 cut(s)	765
BseRI	GAGGAG	4 cut(s)	397, 569, 587, 590
BseXI	GCAGC	4 cut(s)	141, 490, 818, 864
BsgI	GTGCAG	2 cut(s)	190, 422
Bsh1236I	CGCG	5 cut(s)	213, 237, 311, 375, 650
BshFI	GGCC	3 cut(s)	192, 592, 1063
BshNI	GGYRCC	2 cut(s)	140, 297
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	6 cut(s)	272, 295, 301, 370, 430, 461
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	3 cut(s)	300, 375, 873
BsmAI	GTCTC	3 cut(s)	551, 572, 939
BsmBI	CGTCTC	2 cut(s)	551, 572
BsmFI	GGGAC	1 cut(s)	431
BsnI	GGCC	3 cut(s)	192, 592, 1063
Bsp119I	TTCGAA	2 cut(s)	16, 134
Bsp1286I	GDGCHC	2 cut(s)	116, 267
Bsp1407I	TGTACA	1 cut(s)	987
Bsp143I	GATC	3 cut(s)	94, 871, 981
BspANI	GGCC	3 cut(s)	192, 592, 1063
BspCNI	CTCAG	4 cut(s)	136, 802, 960, 967
BspFNI	CGCG	5 cut(s)	213, 237, 311, 375, 650
BspLI	GGNNCC	3 cut(s)	142, 264, 299
BspPI	GGATC	1 cut(s)	989
BspT104I	TTCGAA	2 cut(s)	16, 134
BspT107I	GGYRCC	2 cut(s)	140, 297
BsrGI	TGTACA	1 cut(s)	987
BsrI	ACTGG	1 cut(s)	765
BssECI	CCNNGG	5 cut(s)	293, 309, 359, 884, 1067
BssMI	GATC	3 cut(s)	94, 871, 981
BssNI	GRCGYC	2 cut(s)	298, 626
Bst2UI	CCWGG	3 cut(s)	107, 449, 1069
Bst4CI	ACNGT	1 cut(s)	950
BstACI	GRCGYC	2 cut(s)	298, 626
BstAUI	TGTACA	1 cut(s)	987
BstBAI	YACGTR	1 cut(s)	412
BstBI	TTCGAA	2 cut(s)	16, 134
BstC8I	GCNNGC	2 cut(s)	377, 648
BstDEI	CTNAG	4 cut(s)	123, 810, 954, 968
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	4 cut(s)	604, 673, 760, 868
BstFNI	CGCG	5 cut(s)	213, 237, 311, 375, 650
BstH2I	RGCGCY	1 cut(s)	301
BstHHI	GCGC	6 cut(s)	159, 215, 239, 300, 375, 1039
BstKTI	GATC	3 cut(s)	97, 874, 984
BstMAI	GTCTC	3 cut(s)	551, 572, 939
BstMBI	GATC	3 cut(s)	94, 871, 981
BstMWI	GCNNNNNNNGC	3 cut(s)	525, 1034, 1093
BstNI	CCWGG	3 cut(s)	107, 449, 1069
BstSCI	CCNGG	7 cut(s)	105, 270, 293, 368, 447, 459, 1067
BstUI	CGCG	5 cut(s)	213, 237, 311, 375, 650
BstV1I	GCAGC	4 cut(s)	141, 490, 818, 864
BstV2I	GAAGAC	1 cut(s)	371
BstX2I	RGATCY	1 cut(s)	981
BstYI	RGATCY	1 cut(s)	981
Bsu36I	CCTNAGG	1 cut(s)	954
BsuRI	GGCC	3 cut(s)	192, 592, 1063
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	4 cut(s)	604, 673, 760, 868
Cac8I	GCNNGC	2 cut(s)	377, 648
CfoI	GCGC	6 cut(s)	159, 215, 239, 300, 375, 1039
Cfr13I	GGNCC	2 cut(s)	191, 274
Cfr42I	CCGCGG	1 cut(s)	312
CpoI	CGGWCCG	1 cut(s)	274
CseI	GACGC	1 cut(s)	615
CsiI	ACCWGGT	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	988, 1099
CspCI	CAANNNNNGTGG	2 cut(s)	165, 200
CspI	CGGWCCG	1 cut(s)	274
CviAII	CATG	3 cut(s)	181, 904, 1030
CviQI	GTAC	2 cut(s)	988, 1099
DdeI	CTNAG	4 cut(s)	123, 810, 954, 968
DinI	GGCGCC	1 cut(s)	299
DpnI	GATC	3 cut(s)	96, 873, 983
DpnII	GATC	3 cut(s)	94, 871, 981
DraIII	CACNNNGTG	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	590
EciI	GGCGGA	4 cut(s)	333, 345, 394, 1028
Eco24I	GRGCYC	1 cut(s)	267
Eco32I	GATATC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	274
Eco81I	CCTNAGG	1 cut(s)	954
EcoRII	CCWGG	3 cut(s)	105, 447, 1067
EcoRV	GATATC	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	267
EgeI	GGCGCC	1 cut(s)	299
EheI	GGCGCC	1 cut(s)	299
Esp3I	CGTCTC	2 cut(s)	551, 572
FaeI	CATG	3 cut(s)	184, 907, 1033
FalI	AAGNNNNNCTT	2 cut(s)	739, 771
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	3 cut(s)	180, 903, 1029
FauI	CCCGC	2 cut(s)	218, 368
FbaI	TGATCA	1 cut(s)	94
FokI	GGATG	4 cut(s)	611, 680, 747, 875
FriOI	GRGCYC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	1102
FspI	TGCGCA	1 cut(s)	1038
GlaI	GCGC	6 cut(s)	158, 214, 238, 299, 374, 1038
HaeII	RGCGCY	1 cut(s)	301
HaeIII	GGCC	3 cut(s)	192, 592, 1063
HapII	CCGG	6 cut(s)	272, 295, 301, 370, 430, 461
HgaI	GACGC	1 cut(s)	615
HhaI	GCGC	6 cut(s)	159, 215, 239, 300, 375, 1039
Hin1I	GRCGYC	2 cut(s)	298, 626
Hin1II	CATG	3 cut(s)	184, 907, 1033
Hin6I	GCGC	6 cut(s)	157, 213, 237, 298, 373, 1037
HinP1I	GCGC	6 cut(s)	157, 213, 237, 298, 373, 1037
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HindIII	AAGCTT	1 cut(s)	748
HinfI	GANTC	6 cut(s)	18, 131, 257, 355, 652, 1003
HpaII	CCGG	6 cut(s)	272, 295, 301, 370, 430, 461
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188III	TCNNGA	5 cut(s)	246, 352, 472, 790, 913
Hpy8I	GTNNAC	1 cut(s)	514
Hpy99I	CGWCG	4 cut(s)	527, 533, 539, 631
HpyCH4III	ACNGT	1 cut(s)	950
HpyCH4IV	ACGT	3 cut(s)	411, 434, 660
HpyCH4V	TGCA	6 cut(s)	38, 89, 187, 207, 403, 1055
HpyF10VI	GCNNNNNNNGC	3 cut(s)	525, 1034, 1093
HpyF3I	CTNAG	4 cut(s)	123, 810, 954, 968
HpySE526I	ACGT	3 cut(s)	411, 434, 660
Hsp92I	GRCGYC	2 cut(s)	298, 626
Hsp92II	CATG	3 cut(s)	184, 907, 1033
HspAI	GCGC	6 cut(s)	157, 213, 237, 298, 373, 1037
KasI	GGCGCC	1 cut(s)	297
Ksp22I	TGATCA	1 cut(s)	94
KspI	CCGCGG	1 cut(s)	312
Kzo9I	GATC	3 cut(s)	94, 871, 981
LmnI	GCTCC	6 cut(s)	220, 262, 384, 451, 832, 1084
Lsp1109I	GCAGC	4 cut(s)	141, 490, 818, 864
LweI	GCATC	2 cut(s)	589, 853
MabI	ACCWGGT	1 cut(s)	105
MaeI	CTAG	1 cut(s)	1102
MaeII	ACGT	3 cut(s)	411, 434, 660
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	3 cut(s)	96, 873, 983
MboI	GATC	3 cut(s)	94, 871, 981
MboII	GAAGA	3 cut(s)	376, 487, 907
MfeI	CAATTG	1 cut(s)	90
MflI	RGATCY	1 cut(s)	981
MhlI	GDGCHC	2 cut(s)	116, 267
Mly113I	GGCGCC	1 cut(s)	298
MmeI	TCCRAC	1 cut(s)	609
MseI	TTAA	2 cut(s)	438, 729
MslI	CAYNNNNRTG	1 cut(s)	149
MspA1I	CMGCKG	3 cut(s)	311, 595, 809
MspI	CCGG	6 cut(s)	272, 295, 301, 370, 430, 461
MspR9I	CCNGG	7 cut(s)	107, 272, 295, 370, 449, 461, 1069
MunI	CAATTG	1 cut(s)	90
MvaI	CCWGG	3 cut(s)	107, 449, 1069
MvnI	CGCG	5 cut(s)	213, 237, 311, 375, 650
MwoI	GCNNNNNNNGC	3 cut(s)	525, 1034, 1093
NarI	GGCGCC	1 cut(s)	298
NciI	CCSGG	4 cut(s)	272, 295, 370, 461
NdeII	GATC	3 cut(s)	94, 871, 981
NlaIII	CATG	3 cut(s)	184, 907, 1033
NlaIV	GGNNCC	3 cut(s)	142, 264, 299
NmuCI	GTSAC	1 cut(s)	170
NsbI	TGCGCA	1 cut(s)	1038
NspV	TTCGAA	2 cut(s)	16, 134
PcsI	WCGNNNNNNNCGW	1 cut(s)	531
PfeI	GAWTC	6 cut(s)	18, 131, 257, 355, 652, 1003
PfoI	TCCNGGA	1 cut(s)	447
PluTI	GGCGCC	1 cut(s)	301
Ppu21I	YACGTR	1 cut(s)	412
PshBI	ATTAAT	1 cut(s)	729
Psp6I	CCWGG	3 cut(s)	105, 447, 1067
PspGI	CCWGG	3 cut(s)	105, 447, 1067
PspN4I	GGNNCC	3 cut(s)	142, 264, 299
PspPI	GGNCC	2 cut(s)	191, 274
PsuI	RGATCY	1 cut(s)	981
PvuII	CAGCTG	1 cut(s)	809
RsaI	GTAC	2 cut(s)	989, 1100
RsaNI	GTAC	2 cut(s)	988, 1099
RseI	CAYNNNNRTG	1 cut(s)	149
Rsr2I	CGGWCCG	1 cut(s)	274
RsrII	CGGWCCG	1 cut(s)	274
SacII	CCGCGG	1 cut(s)	312
SaqAI	TTAA	2 cut(s)	438, 729
Sau3AI	GATC	3 cut(s)	94, 871, 981
Sau96I	GGNCC	2 cut(s)	191, 274
ScrFI	CCNGG	7 cut(s)	107, 272, 295, 370, 449, 461, 1069
SduI	GDGCHC	2 cut(s)	116, 267
SexAI	ACCWGGT	1 cut(s)	105
SfaNI	GCATC	2 cut(s)	589, 853
SfoI	GGCGCC	1 cut(s)	299
Sfr303I	CCGCGG	1 cut(s)	312
SfuI	TTCGAA	2 cut(s)	16, 134
SgrBI	CCGCGG	1 cut(s)	312
SinI	GGWCC	1 cut(s)	274
SmiMI	CAYNNNNRTG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	836
SmoI	CTYRAG	1 cut(s)	836
SspDI	GGCGCC	1 cut(s)	297
SspI	AATATT	1 cut(s)	77
SspMI	CTAG	1 cut(s)	1102
StyD4I	CCNGG	7 cut(s)	105, 270, 293, 368, 447, 459, 1067
TaaI	ACNGT	1 cut(s)	950
TaiI	ACGT	3 cut(s)	414, 437, 663
TaqI	TCGA	6 cut(s)	16, 134, 245, 471, 789, 912
TaqII	GACCGA	1 cut(s)	291
TatI	WGTACW	1 cut(s)	987
TauI	GCSGC	7 cut(s)	237, 395, 398, 509, 522, 595, 1066
TfiI	GAWTC	6 cut(s)	18, 131, 257, 355, 652, 1003
Tru1I	TTAA	2 cut(s)	438, 729
Tru9I	TTAA	2 cut(s)	438, 729
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	4 cut(s)	154, 503, 806, 877
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	5 cut(s)	339, 506, 684, 749, 920
TspGWI	ACGGA	1 cut(s)	596
VpaK11BI	GGWCC	1 cut(s)	274
VspI	ATTAAT	1 cut(s)	729
XapI	RAATTY	1 cut(s)	165
XspI	CTAG	1 cut(s)	1102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.