Rh6DG410600

Acyltransferase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
59678303 .. 59682521
4219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG410600.1

Sequence Viewer

Length: 873 bp
ATGGAATCGGAGCTCAAGGACCTGAATTCCACACCGGCATCAAAGCCCTCCTCCGCCAAGGACGACCGCCCGCTCCTCAAACCCGAGCCGGCCCCGTCCGTCTCCGCCGAGGAGCTCCAGGAGCTCGAGAAGAAATGCGCCGCCTACGTCCGCAGAGACGCGTACGGCACCATGGGACGCGGCGAGCTGTCGCTCAAGGAGAAGCTCCTGCTCGGCGTCGCCCTCGTCACTCTGGTCCCGATACGCGTGGTGGTGATCATGACGCTCCTCCCCTTCTATTACTTGATTTGTAGGATTTGCACGCTCTTCTCTTCTCCGAATCGAGACGAGGACGAGCAGGAGGACTACGCGCACATGGGAGGCTGGAGACGCGCCGTGATTGTTTGGTGCGGCCGATCCTTATCCAGAGTCATGCTCTTCGTCCTAGGTTTTTATTGGATCAGCGAAACCTATCGGATACCAGACCCTGCTCAACAATCCAAGCCTGAGGGAAAAGAGGATAGTGGAGAGGCTGAGAAGCCTGGGGCTATTATATCTAACCATGTATCGTATTTGGATATCTTGTATCACATGTCTTCTTCCTTTCCGAGCTTTGTTGCCAAGAGGTCGGTGGCGAAACTTCCTCTAGTTGGCCTCATCAGCAAGTGCCTCGGTTGTGTCTATGTTCAGCGGGAGTCAAAGTCATCCGACTTCAAGGGTGTTGCAGGTGTTGTGACAGATAGAGTTCGAGAAGCACATCAGAATAAATCTGCACCACAAATTATGCTTTTCCCAGGTTATTTTCTTAATACTTTATTACCACTAATCCTTTCTCCAATGAATTCAAATGACTTTGCTGTCACAACTATACTGTCCTCAATTAGTGCTTATTAG

Protein Analysis

290

Amino Acids

32.23

Weight (kDa)

7.58

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 170 - 258 4.1e-09 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 695
AasI GACNNNNNNGTC 1 cut(s) 836
Acc36I ACCTGC 1 cut(s) 695
AccB1I GGYRCC 1 cut(s) 167
AccBSI CCGCTC 1 cut(s) 73
AccII CGCG 5 cut(s) 161, 180, 246, 350, 372
AciI CCGC 9 cut(s) 54, 67, 71, 105, 141, 151, 180, 390, 670
AclWI GGATC 2 cut(s) 390, 446
AcoI YGGCCR 1 cut(s) 391
AcsI RAATTY 2 cut(s) 25, 820
AcyI GRCGYC 1 cut(s) 216
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 629
AflIII ACRYGT 3 cut(s) 159, 244, 570
AgsI TTSAA 2 cut(s) 694, 825
AjnI CCWGG 3 cut(s) 117, 520, 772
AluBI AGCT 6 cut(s) 13, 115, 124, 187, 205, 591
AluI AGCT 6 cut(s) 13, 115, 124, 187, 205, 591
Alw21I GWGCWC 3 cut(s) 15, 117, 126
Alw26I GTCTC 4 cut(s) 106, 150, 318, 361
AlwI GGATC 2 cut(s) 390, 446
AlwNI CAGNNNCTG 1 cut(s) 467
Ama87I CYCGRG 2 cut(s) 83, 125
AoxI GGCC 3 cut(s) 90, 391, 631
ApoI RAATTY 2 cut(s) 25, 820
AspA2I CCTAGG 1 cut(s) 424
AspLEI GCGC 3 cut(s) 140, 352, 374
AspS9I GGNCC 3 cut(s) 19, 91, 235
AsuHPI GGTGA 1 cut(s) 265
AvaI CYCGRG 2 cut(s) 83, 125
AvaII GGWCC 2 cut(s) 19, 235
AvrII CCTAGG 1 cut(s) 424
AxyI CCTNAGG 1 cut(s) 486
BanI GGYRCC 1 cut(s) 167
BanII GRGCYC 3 cut(s) 15, 117, 126
BbsI GAAGAC 1 cut(s) 567
Bbv12I GWGCWC 3 cut(s) 15, 117, 126
BceAI ACGGC 2 cut(s) 181, 359
BcgI CGANNNNNNTGC 2 cut(s) 631, 665
BciT130I CCWGG 3 cut(s) 119, 522, 774
BciVI GTATCC 1 cut(s) 450
BclI TGATCA 1 cut(s) 255
BcoDI GTCTC 4 cut(s) 106, 150, 318, 361
BfaI CTAG 2 cut(s) 425, 626
BfuAI ACCTGC 1 cut(s) 695
BfuI GTATCC 1 cut(s) 450
BisI GCNGC 3 cut(s) 141, 181, 391
BlnI CCTAGG 1 cut(s) 424
BlsI GCNGC 3 cut(s) 142, 182, 392
Bme1390I CCNGG 3 cut(s) 119, 522, 774
Bme18I GGWCC 2 cut(s) 19, 235
BmeT110I CYCGRG 2 cut(s) 83, 125
BmgT120I GGNCC 3 cut(s) 19, 91, 235
BmiI GGNNCC 3 cut(s) 93, 169, 237
BmrFI CCNGG 3 cut(s) 119, 522, 774
BmsI GCATC 1 cut(s) 47
BpiI GAAGAC 1 cut(s) 567
BplI GAGNNNNNCTC 2 cut(s) 399, 431
BpmI CTGGAG 2 cut(s) 101, 385
BpuEI CTTGAG 1 cut(s) 179
BsaBI GATNNNNATC 1 cut(s) 400
BsaHI GRCGYC 1 cut(s) 216
BsaJI CCNNGG 7 cut(s) 57, 108, 171, 424, 521, 649, 772
BsaXI ACNNNNNCTCC 2 cut(s) 665, 695
Bsc4I CCNNNNNNNGG 1 cut(s) 629
Bse118I RCCGGY 2 cut(s) 34, 88
Bse21I CCTNAGG 1 cut(s) 486
Bse8I GATNNNNATC 1 cut(s) 400
BseBI CCWGG 3 cut(s) 119, 522, 774
BseDI CCNNGG 7 cut(s) 57, 108, 171, 424, 521, 649, 772
BseGI GGATG 1 cut(s) 683
BseJI GATNNNNATC 1 cut(s) 400
BseLI CCNNNNNNNGG 1 cut(s) 629
BseMII CTCAG 2 cut(s) 477, 504
BseRI GAGGAG 4 cut(s) 40, 65, 125, 257
BseX3I CGGCCG 1 cut(s) 391
BsgI GTGCAG 1 cut(s) 735
Bsh1236I CGCG 5 cut(s) 161, 180, 246, 350, 372
Bsh1285I CGRYCG 2 cut(s) 67, 394
BshFI GGCC 3 cut(s) 92, 393, 633
BshNI GGYRCC 1 cut(s) 167
BsiEI CGRYCG 2 cut(s) 67, 394
BsiHKAI GWGCWC 3 cut(s) 15, 117, 126
BsiHKCI CYCGRG 2 cut(s) 83, 125
BsiSI CCGG 2 cut(s) 35, 89
BsiWI CGTACG 1 cut(s) 162
BslFI GGGAC 2 cut(s) 189, 221
BslI CCNNNNNNNGG 1 cut(s) 629
BsmAI GTCTC 4 cut(s) 106, 150, 318, 361
BsmBI CGTCTC 4 cut(s) 106, 150, 318, 361
BsmFI GGGAC 2 cut(s) 189, 221
BsnI GGCC 3 cut(s) 92, 393, 633
BsoBI CYCGRG 2 cut(s) 83, 125
Bsp1286I GDGCHC 3 cut(s) 15, 117, 126
Bsp143I GATC 3 cut(s) 255, 395, 438
Bsp19I CCATGG 1 cut(s) 171
BspACI CCGC 9 cut(s) 54, 67, 71, 105, 141, 151, 180, 390, 670
BspANI GGCC 3 cut(s) 92, 393, 633
BspCNI CTCAG 2 cut(s) 478, 505
BspFNI CGCG 5 cut(s) 161, 180, 246, 350, 372
BspHI TCATGA 1 cut(s) 258
BspLI GGNNCC 3 cut(s) 93, 169, 237
BspMI ACCTGC 1 cut(s) 695
BspPI GGATC 2 cut(s) 390, 446
BspQI GCTCTTC 2 cut(s) 311, 422
BspT107I GGYRCC 1 cut(s) 167
BsrBI CCGCTC 1 cut(s) 73
BsrFI RCCGGY 2 cut(s) 34, 88
BssAI RCCGGY 2 cut(s) 34, 88
BssECI CCNNGG 7 cut(s) 57, 108, 171, 424, 521, 649, 772
BssMI GATC 3 cut(s) 255, 395, 438
BssNI GRCGYC 1 cut(s) 216
BssT1I CCWWGG 3 cut(s) 57, 171, 424
Bst2UI CCWGG 3 cut(s) 119, 522, 774
Bst4CI ACNGT 1 cut(s) 852
Bst6I CTCTTC 3 cut(s) 311, 316, 422
BstACI GRCGYC 1 cut(s) 216
BstC8I GCNNGC 4 cut(s) 71, 90, 185, 302
BstDEI CTNAG 2 cut(s) 486, 513
BstDSI CCRYGG 1 cut(s) 171
BstF5I GGATG 1 cut(s) 683
BstFNI CGCG 5 cut(s) 161, 180, 246, 350, 372
BstHHI GCGC 3 cut(s) 140, 352, 374
BstKTI GATC 3 cut(s) 258, 398, 441
BstMAI GTCTC 4 cut(s) 106, 150, 318, 361
BstMBI GATC 3 cut(s) 255, 395, 438
BstMCI CGRYCG 2 cut(s) 67, 394
BstMWI GCNNNNNNNGC 3 cut(s) 121, 369, 639
BstNI CCWGG 3 cut(s) 119, 522, 774
BstNSI RCATGY 1 cut(s) 574
BstSCI CCNGG 3 cut(s) 117, 520, 772
BstUI CGCG 5 cut(s) 161, 180, 246, 350, 372
BstV2I GAAGAC 1 cut(s) 567
BstZI CGGCCG 1 cut(s) 391
Bsu36I CCTNAGG 1 cut(s) 486
BsuI GTATCC 1 cut(s) 450
BsuRI GGCC 3 cut(s) 92, 393, 633
BtgI CCRYGG 1 cut(s) 171
BtsCI GGATG 1 cut(s) 683
BveI ACCTGC 1 cut(s) 695
Cac8I GCNNGC 4 cut(s) 71, 90, 185, 302
CaiI CAGNNNCTG 1 cut(s) 467
CciI TCATGA 1 cut(s) 258
CfoI GCGC 3 cut(s) 140, 352, 374
Cfr10I RCCGGY 2 cut(s) 34, 88
Cfr13I GGNCC 3 cut(s) 19, 91, 235
CseI GACGC 5 cut(s) 167, 186, 205, 271, 378
Csp6I GTAC 1 cut(s) 163
CviAII CATG 6 cut(s) 172, 259, 355, 412, 542, 571
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 2 cut(s) 486, 513
DpnI GATC 3 cut(s) 257, 397, 440
DpnII GATC 3 cut(s) 255, 395, 438
DrdI GACNNNNNNGTC 1 cut(s) 836
DseDI GACNNNNNNGTC 1 cut(s) 836
EaeI YGGCCR 1 cut(s) 391
EagI CGGCCG 1 cut(s) 391
Eam1104I CTCTTC 3 cut(s) 311, 316, 422
EarI CTCTTC 3 cut(s) 311, 316, 422
EciI GGCGGA 2 cut(s) 43, 94
Ecl136II GAGCTC 3 cut(s) 13, 115, 124
EclXI CGGCCG 1 cut(s) 391
Eco130I CCWWGG 3 cut(s) 57, 171, 424
Eco24I GRGCYC 3 cut(s) 15, 117, 126
Eco32I GATATC 1 cut(s) 559
Eco47I GGWCC 2 cut(s) 19, 235
Eco52I CGGCCG 1 cut(s) 391
Eco53kI GAGCTC 3 cut(s) 13, 115, 124
Eco81I CCTNAGG 1 cut(s) 486
Eco88I CYCGRG 2 cut(s) 83, 125
EcoICRI GAGCTC 3 cut(s) 13, 115, 124
EcoO109I RGGNCCY 1 cut(s) 19
EcoRI GAATTC 2 cut(s) 25, 820
EcoRII CCWGG 3 cut(s) 117, 520, 772
EcoRV GATATC 1 cut(s) 559
EcoT14I CCWWGG 3 cut(s) 57, 171, 424
EcoT38I GRGCYC 3 cut(s) 15, 117, 126
ErhI CCWWGG 3 cut(s) 57, 171, 424
Esp3I CGTCTC 4 cut(s) 106, 150, 318, 361
FaeI CATG 6 cut(s) 175, 262, 358, 415, 545, 574
FaqI GGGAC 2 cut(s) 189, 221
FatI CATG 6 cut(s) 171, 258, 354, 411, 541, 570
FauI CCCGC 2 cut(s) 78, 663
FbaI TGATCA 1 cut(s) 255
Fnu4HI GCNGC 3 cut(s) 141, 181, 391
FokI GGATG 1 cut(s) 670
FriOI GRGCYC 3 cut(s) 15, 117, 126
Fsp4HI GCNGC 3 cut(s) 141, 181, 391
FspBI CTAG 2 cut(s) 425, 626
GlaI GCGC 3 cut(s) 139, 351, 373
GluI GCNGC 3 cut(s) 141, 181, 391
GsuI CTGGAG 2 cut(s) 101, 385
HaeIII GGCC 3 cut(s) 92, 393, 633
HapII CCGG 2 cut(s) 35, 89
HgaI GACGC 5 cut(s) 167, 186, 205, 271, 378
HhaI GCGC 3 cut(s) 140, 352, 374
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 6 cut(s) 175, 262, 358, 415, 545, 574
Hin6I GCGC 3 cut(s) 138, 350, 372
HinP1I GCGC 3 cut(s) 138, 350, 372
HinfI GANTC 4 cut(s) 5, 319, 408, 674
HpaII CCGG 2 cut(s) 35, 89
HphI GGTGA 1 cut(s) 265
Hpy188I TCNGA 6 cut(s) 10, 318, 456, 588, 688, 741
Hpy188III TCNNGA 6 cut(s) 127, 238, 259, 323, 405, 728
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 1 cut(s) 852
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 3 cut(s) 300, 704, 752
HpyF10VI GCNNNNNNNGC 3 cut(s) 121, 369, 639
HpyF3I CTNAG 2 cut(s) 486, 513
HpySE526I ACGT 1 cut(s) 147
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 6 cut(s) 175, 262, 358, 415, 545, 574
HspAI GCGC 3 cut(s) 138, 350, 372
KroI GCCGGC 1 cut(s) 88
KroNI GCCGGC 1 cut(s) 90
Ksp22I TGATCA 1 cut(s) 255
Kzo9I GATC 3 cut(s) 255, 395, 438
LguI GCTCTTC 2 cut(s) 311, 422
LmnI GCTCC 7 cut(s) 10, 78, 112, 120, 121, 210, 270
LweI GCATC 1 cut(s) 47
MaeI CTAG 2 cut(s) 425, 626
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 3 cut(s) 226, 712, 838
MalI GATC 3 cut(s) 257, 397, 440
MbiI CCGCTC 1 cut(s) 73
MboI GATC 3 cut(s) 255, 395, 438
MboII GAAGA 6 cut(s) 142, 298, 303, 409, 567, 570
MhlI GDGCHC 3 cut(s) 15, 117, 126
MluCI AATT 4 cut(s) 25, 759, 820, 858
MluI ACGCGT 2 cut(s) 159, 244
MlyI GAGTC 2 cut(s) 417, 683
MmeI TCCRAC 1 cut(s) 711
MroNI GCCGGC 1 cut(s) 88
MseI TTAA 1 cut(s) 786
MspA1I CMGCKG 1 cut(s) 670
MspI CCGG 2 cut(s) 35, 89
MspR9I CCNGG 3 cut(s) 119, 522, 774
MvaI CCWGG 3 cut(s) 119, 522, 774
MvnI CGCG 5 cut(s) 161, 180, 246, 350, 372
MwoI GCNNNNNNNGC 3 cut(s) 121, 369, 639
NaeI GCCGGC 1 cut(s) 90
NcoI CCATGG 1 cut(s) 171
NdeII GATC 3 cut(s) 255, 395, 438
NgoMIV GCCGGC 1 cut(s) 88
NlaIII CATG 6 cut(s) 175, 262, 358, 415, 545, 574
NlaIV GGNNCC 3 cut(s) 93, 169, 237
NmeAIII GCCGAG 2 cut(s) 133, 192
NmuCI GTSAC 3 cut(s) 226, 712, 838
NspI RCATGY 1 cut(s) 574
PaeR7I CTCGAG 1 cut(s) 125
PagI TCATGA 1 cut(s) 258
PaqCI CACCTGC 1 cut(s) 695
PciI ACATGT 1 cut(s) 570
PciSI GCTCTTC 2 cut(s) 311, 422
PdiI GCCGGC 1 cut(s) 90
PfeI GAWTC 2 cut(s) 5, 319
Pfl23II CGTACG 1 cut(s) 162
PfoI TCCNGGA 1 cut(s) 117
PkrI GCNGC 3 cut(s) 142, 182, 392
PleI GAGTC 2 cut(s) 416, 682
PpsI GAGTC 2 cut(s) 416, 682
PpuMI RGGWCCY 1 cut(s) 19
PscI ACATGT 1 cut(s) 570
Psp124BI GAGCTC 3 cut(s) 15, 117, 126
Psp5II RGGWCCY 1 cut(s) 19
Psp6I CCWGG 3 cut(s) 117, 520, 772
PspGI CCWGG 3 cut(s) 117, 520, 772
PspLI CGTACG 1 cut(s) 162
PspN4I GGNNCC 3 cut(s) 93, 169, 237
PspPI GGNCC 3 cut(s) 19, 91, 235
PspPPI RGGWCCY 1 cut(s) 19
PstNI CAGNNNCTG 1 cut(s) 467
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SacI GAGCTC 3 cut(s) 15, 117, 126
SapI GCTCTTC 2 cut(s) 311, 422
SaqAI TTAA 1 cut(s) 786
SatI GCNGC 3 cut(s) 141, 181, 391
Sau3AI GATC 3 cut(s) 255, 395, 438
Sau96I GGNCC 3 cut(s) 19, 91, 235
SchI GAGTC 2 cut(s) 417, 683
ScrFI CCNGG 3 cut(s) 119, 522, 774
SduI GDGCHC 3 cut(s) 15, 117, 126
SfaNI GCATC 1 cut(s) 47
Sfr274I CTCGAG 1 cut(s) 125
SinI GGWCC 2 cut(s) 19, 235
SlaI CTCGAG 1 cut(s) 125
SmlI CTYRAG 3 cut(s) 14, 125, 194
SmoI CTYRAG 3 cut(s) 14, 125, 194
Sse9I AATT 4 cut(s) 25, 759, 820, 858
SsiI CCGC 9 cut(s) 54, 67, 71, 105, 141, 151, 180, 390, 670
SspMI CTAG 2 cut(s) 425, 626
SstI GAGCTC 3 cut(s) 15, 117, 126
StyD4I CCNGG 3 cut(s) 117, 520, 772
StyI CCWWGG 3 cut(s) 57, 171, 424
TaaI ACNGT 1 cut(s) 852
TaiI ACGT 1 cut(s) 150
TaqI TCGA 3 cut(s) 126, 322, 727
TasI AATT 4 cut(s) 25, 759, 820, 858
TauI GCSGC 3 cut(s) 143, 183, 393
TfiI GAWTC 2 cut(s) 5, 319
Tru1I TTAA 1 cut(s) 786
Tru9I TTAA 1 cut(s) 786
TseFI GTSAC 3 cut(s) 226, 712, 838
Tsp45I GTSAC 3 cut(s) 226, 712, 838
TspDTI ATGAA 1 cut(s) 833
TspGWI ACGGA 1 cut(s) 88
VpaK11BI GGWCC 2 cut(s) 19, 235
XapI RAATTY 2 cut(s) 25, 820
XceI RCATGY 1 cut(s) 574
XcmI CCANNNNNNNNNTGG 1 cut(s) 607
XhoI CTCGAG 1 cut(s) 125
XmaJI CCTAGG 1 cut(s) 424
XspI CTAG 2 cut(s) 425, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.