Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8413177.1

Orthogroup ID

OG0005846

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1288

Gene Structure 1288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8413177.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 338 bp

gagcatttttggctaaagctccggtgcttccagtgattcttagatatccttaccagagatttagtcctgcctgggactcgatatctggggtgcgacatgtgatatttcttctctgtcaatttaaaaatcgcatagaggtcacaaggttacctgtttattacccttcacaggaagaaaaggatgacccaaaactctacgctaataatgtcagaaaattgatggccagtgagggtagcatgactctgtcggatatcggacttgctgagaagcgggtatatcatgctgcgcttaatggtaataatagccatcctagtgttttgcatcagaaagacgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0006082 GO:0006629 GO:0006631 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0012505 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0047184 GO:0050200 GO:0071617 GO:0071618 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 map00564 map00565 map01100

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

111

Amino Acids

12.66

Weight (kDa)

9.1

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80950 AT1G80950
fragaria_vesca	FvH4_2g40130 FvH4_2g40130 FvH4_2g40130
malus_domestica	MD08G1032300.v1.1 MD15G1028600.v1.1 MD15G1029000.v1.1
prunus_persica	Prupe.1G382400_v2.0.a1 Prupe.1G382400_v2.0.a1 Prupe.1G382400_v2.0.a1 Prupe.1G382400_v2.0.a1 Prupe.1G382400_v2.0.a1
pyrus_communis	pycom08g02560 pycom15g02570
rosa_chinensis	RchiOBHm_Chr6g0300601
rosa_laevigata	RLG00000011320
rosa_multiflora	Rmu_co8413177.1_g000001 Rmu_co8463661.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167600
rosa_rugosa	Rorug06G0297800 Rorug06G0297900 Rorug06G0298000
rosa_samantha	Rh6AG410400 Rh6BG417500 Rh6CG425100 Rh6DG410600
rosa_wichuraiana	Rw6G035890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	270
AcoI	YGGCCR	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	168
AflIII	ACRYGT	1 cut(s)	96
AjnI	CCWGG	1 cut(s)	70
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
AoxI	GGCC	1 cut(s)	221
ApeKI	GCWGC	1 cut(s)	283
AspLEI	GCGC	1 cut(s)	288
BalI	TGGCCA	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	270
BccI	CCATC	2 cut(s)	213, 314
BciT130I	CCWGG	1 cut(s)	72
BfaI	CTAG	1 cut(s)	311
BisI	GCNGC	1 cut(s)	284
BlsI	GCNGC	1 cut(s)	285
Bme1390I	CCNGG	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	72
BmsI	GCATC	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	71
BsaWI	WCCGGW	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	1 cut(s)	168
Bse1I	ACTGG	2 cut(s)	31, 224
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	71
BseGI	GGATG	2 cut(s)	186, 306
BseLI	CCNNNNNNNGG	1 cut(s)	168
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	2 cut(s)	31, 224
BseXI	GCAGC	1 cut(s)	270
BshFI	GGCC	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	1 cut(s)	168
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	223
BspACI	CCGC	1 cut(s)	270
BspANI	GGCC	1 cut(s)	223
BspCNI	CTCAG	1 cut(s)	255
BsrI	ACTGG	2 cut(s)	31, 224
BssECI	CCNNGG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	40, 263
BstEII	GGTNACC	1 cut(s)	146
BstF5I	GGATG	2 cut(s)	186, 306
BstHHI	GCGC	1 cut(s)	288
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	72
BstNSI	RCATGY	1 cut(s)	100
BstPI	GGTNACC	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	223
BtsCI	GGATG	2 cut(s)	186, 306
BtsIMutI	CAGTG	2 cut(s)	38, 231
CfoI	GCGC	1 cut(s)	288
CviAII	CATG	3 cut(s)	97, 237, 280
CviJI	RGCY	4 cut(s)	13, 19, 223, 305
CviKI_1	RGCY	4 cut(s)	13, 19, 223, 305
DdeI	CTNAG	2 cut(s)	40, 263
DraI	TTTAAA	1 cut(s)	123
EaeI	YGGCCR	1 cut(s)	221
Eco32I	GATATC	3 cut(s)	46, 83, 252
Eco91I	GGTNACC	1 cut(s)	146
EcoO65I	GGTNACC	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	70
EcoRV	GATATC	3 cut(s)	46, 83, 252
FaeI	CATG	3 cut(s)	100, 240, 283
FaiI	YATR	5 cut(s)	98, 133, 238, 276, 281
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	3 cut(s)	96, 236, 279
FauI	CCCGC	1 cut(s)	263
Fnu4HI	GCNGC	1 cut(s)	284
FokI	GGATG	2 cut(s)	193, 293
Fsp4HI	GCNGC	1 cut(s)	284
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	1 cut(s)	284
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	1 cut(s)	22
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	3 cut(s)	100, 240, 283
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HinfI	GANTC	3 cut(s)	36, 76, 240
HpaII	CCGG	1 cut(s)	22
Hpy188I	TCNGA	4 cut(s)	211, 249, 256, 326
HpyAV	CCTTC	1 cut(s)	173
HpyCH4V	TGCA	1 cut(s)	321
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	2 cut(s)	40, 263
Hsp92II	CATG	3 cut(s)	100, 240, 283
HspAI	GCGC	1 cut(s)	286
LmnI	GCTCC	1 cut(s)	24
Lsp1109I	GCAGC	1 cut(s)	270
LweI	GCATC	1 cut(s)	330
MaeI	CTAG	1 cut(s)	311
MaeIII	GTNAC	2 cut(s)	138, 146
MboII	GAAGA	2 cut(s)	100, 184
MlsI	TGGCCA	1 cut(s)	223
MluCI	AATT	2 cut(s)	118, 214
MluNI	TGGCCA	1 cut(s)	223
MlyI	GAGTC	2 cut(s)	70, 234
MmeI	TCCRAC	1 cut(s)	227
MnlI	CCTC	2 cut(s)	129, 222
Mox20I	TGGCCA	1 cut(s)	223
MscI	TGGCCA	1 cut(s)	223
MseI	TTAA	2 cut(s)	122, 290
MslI	CAYNNNNRTG	1 cut(s)	311
Msp20I	TGGCCA	1 cut(s)	223
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	10
NlaIII	CATG	3 cut(s)	100, 240, 283
NmuCI	GTSAC	1 cut(s)	138
NspI	RCATGY	1 cut(s)	100
PciI	ACATGT	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	36
PflFI	GACNNNGTC	1 cut(s)	243
PkrI	GCNGC	1 cut(s)	285
PleI	GAGTC	2 cut(s)	70, 234
PpsI	GAGTC	2 cut(s)	70, 234
PscI	ACATGT	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	70
PspEI	GGTNACC	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	70
PsyI	GACNNNGTC	1 cut(s)	243
RseI	CAYNNNNRTG	1 cut(s)	311
SaqAI	TTAA	2 cut(s)	122, 290
SatI	GCNGC	1 cut(s)	284
SchI	GAGTC	2 cut(s)	70, 234
ScrFI	CCNGG	1 cut(s)	72
SetI	ASST	4 cut(s)	21, 140, 148, 153
SfaNI	GCATC	1 cut(s)	330
SmiMI	CAYNNNNRTG	1 cut(s)	311
Sse9I	AATT	2 cut(s)	118, 214
SsiI	CCGC	1 cut(s)	270
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	70
TaqI	TCGA	1 cut(s)	79
TasI	AATT	2 cut(s)	118, 214
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	2 cut(s)	122, 290
Tru9I	TTAA	2 cut(s)	122, 290
TscAI	CASTG	2 cut(s)	38, 231
TseFI	GTSAC	1 cut(s)	138
TseI	GCWGC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	138
TspRI	CASTG	2 cut(s)	38, 231
Tth111I	GACNNNGTC	1 cut(s)	243
XceI	RCATGY	1 cut(s)	100
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.