Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8463661.1

Orthogroup ID

OG0005846

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1337

Gene Structure 1337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8463661.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 709 bp

atggaatcggagctcaaggacctgaattccacaccggcatcaaagccctcctcctccgccaaggacgaccgcccgctcctcaaacccgagccggccccgtccgtctccgccgaggagctccaggagctcgagaagaaatgcgccgcctacgtccgcagagacgcgtacggcaccatgggacgcggcgagctgtcgctcaaggagaagctcctgctcggcgtcgccctcgtcactctggtcccgatacgcgtggtggtgagcatgacgctcctcctcttctattacttgatttgtaggatttgcacgctcttctcttctccgaatcgagacgaggacgagcaagaggactacgcgcacatgggaggctggagacgcgccgtgattgtttggtgcggccgatccttatccagagtcatgctcttcgtcctagggttttattggatcagcgaaacctttcggataccagaccctgctcaacaatccaaccctgagggaaaagaggatagtggagaggctgacaagcctggggctattatatctaaccatgtatcgtatttggatatcttgtatcacatgtcttcttcctttccgagctttgttgccaagaggtcggtggcgaaacttcctctagttggcctcatcagcaagtgcctcggttgtgtctatgttcagcgggagtcaaagtcatccgacttcaagggtgttgcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0006082 GO:0006629 GO:0006631 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0012505 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0047184 GO:0050200 GO:0071617 GO:0071618 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 map00564 map00565 map01100

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

236

Amino Acids

26.23

Weight (kDa)

6.83

Isoelectric Point (pI)

53.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80950 AT1G80950
fragaria_vesca	FvH4_2g40130 FvH4_2g40130 FvH4_2g40130
malus_domestica	MD08G1032300.v1.1 MD15G1028600.v1.1 MD15G1029000.v1.1
prunus_persica	Prupe.1G382400_v2.0.a1 Prupe.1G382400_v2.0.a1 Prupe.1G382400_v2.0.a1 Prupe.1G382400_v2.0.a1 Prupe.1G382400_v2.0.a1
pyrus_communis	pycom08g02560 pycom15g02570
rosa_chinensis	RchiOBHm_Chr6g0300601
rosa_laevigata	RLG00000011320
rosa_multiflora	Rmu_co8413177.1_g000001 Rmu_co8463661.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167600
rosa_rugosa	Rorug06G0297800 Rorug06G0297900 Rorug06G0298000
rosa_samantha	Rh6AG410400 Rh6BG417500 Rh6CG425100 Rh6DG410600
rosa_wichuraiana	Rw6G035890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	170
AccBSI	CCGCTC	1 cut(s)	76
AccII	CGCG	5 cut(s)	164, 183, 249, 353, 375
AciI	CCGC	9 cut(s)	57, 70, 74, 108, 144, 154, 183, 393, 673
AclWI	GGATC	2 cut(s)	393, 449
AcoI	YGGCCR	1 cut(s)	394
AcsI	RAATTY	1 cut(s)	25
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	632
AflIII	ACRYGT	3 cut(s)	162, 247, 573
AgsI	TTSAA	1 cut(s)	697
AjnI	CCWGG	2 cut(s)	120, 523
AluBI	AGCT	6 cut(s)	13, 118, 127, 190, 208, 594
AluI	AGCT	6 cut(s)	13, 118, 127, 190, 208, 594
Alw21I	GWGCWC	3 cut(s)	15, 120, 129
Alw26I	GTCTC	4 cut(s)	109, 153, 321, 364
AlwI	GGATC	2 cut(s)	393, 449
AlwNI	CAGNNNCTG	1 cut(s)	470
Ama87I	CYCGRG	2 cut(s)	86, 128
AoxI	GGCC	3 cut(s)	93, 394, 634
ApoI	RAATTY	1 cut(s)	25
Asp700I	GAANNNNTTC	1 cut(s)	453
AspA2I	CCTAGG	1 cut(s)	427
AspLEI	GCGC	3 cut(s)	143, 355, 377
AspS9I	GGNCC	3 cut(s)	19, 94, 238
AsuHPI	GGTGA	1 cut(s)	268
AvaI	CYCGRG	2 cut(s)	86, 128
AvaII	GGWCC	2 cut(s)	19, 238
AvrII	CCTAGG	1 cut(s)	427
AxyI	CCTNAGG	1 cut(s)	489
BanI	GGYRCC	1 cut(s)	170
BanII	GRGCYC	3 cut(s)	15, 120, 129
BbsI	GAAGAC	1 cut(s)	570
Bbv12I	GWGCWC	3 cut(s)	15, 120, 129
BceAI	ACGGC	2 cut(s)	184, 362
BcgI	CGANNNNNNTGC	2 cut(s)	634, 668
BciT130I	CCWGG	2 cut(s)	122, 525
BciVI	GTATCC	1 cut(s)	453
BcoDI	GTCTC	4 cut(s)	109, 153, 321, 364
BfaI	CTAG	2 cut(s)	428, 629
BfuI	GTATCC	1 cut(s)	453
BisI	GCNGC	3 cut(s)	144, 184, 394
BlnI	CCTAGG	1 cut(s)	427
BlsI	GCNGC	3 cut(s)	145, 185, 395
Bme1390I	CCNGG	2 cut(s)	122, 525
Bme18I	GGWCC	2 cut(s)	19, 238
BmeT110I	CYCGRG	2 cut(s)	86, 128
BmgT120I	GGNCC	3 cut(s)	19, 94, 238
BmiI	GGNNCC	3 cut(s)	96, 172, 240
BmrFI	CCNGG	2 cut(s)	122, 525
BmsI	GCATC	1 cut(s)	47
BpiI	GAAGAC	1 cut(s)	570
BplI	GAGNNNNNCTC	2 cut(s)	402, 434
BpmI	CTGGAG	2 cut(s)	104, 388
BpuEI	CTTGAG	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	403
BsaHI	GRCGYC	1 cut(s)	219
BsaJI	CCNNGG	6 cut(s)	60, 111, 174, 427, 524, 652
BsaXI	ACNNNNNCTCC	2 cut(s)	668, 698
Bsc4I	CCNNNNNNNGG	1 cut(s)	632
Bse118I	RCCGGY	2 cut(s)	34, 91
Bse21I	CCTNAGG	1 cut(s)	489
Bse8I	GATNNNNATC	1 cut(s)	403
BseBI	CCWGG	2 cut(s)	122, 525
BseDI	CCNNGG	6 cut(s)	60, 111, 174, 427, 524, 652
BseGI	GGATG	1 cut(s)	686
BseJI	GATNNNNATC	1 cut(s)	403
BseLI	CCNNNNNNNGG	1 cut(s)	632
BseMII	CTCAG	1 cut(s)	480
BseRI	GAGGAG	6 cut(s)	40, 43, 68, 128, 260, 263
BseX3I	CGGCCG	1 cut(s)	394
Bsh1236I	CGCG	5 cut(s)	164, 183, 249, 353, 375
Bsh1285I	CGRYCG	2 cut(s)	70, 397
BshFI	GGCC	3 cut(s)	95, 396, 636
BshNI	GGYRCC	1 cut(s)	170
BsiEI	CGRYCG	2 cut(s)	70, 397
BsiHKAI	GWGCWC	3 cut(s)	15, 120, 129
BsiHKCI	CYCGRG	2 cut(s)	86, 128
BsiSI	CCGG	2 cut(s)	35, 92
BsiWI	CGTACG	1 cut(s)	165
BslFI	GGGAC	2 cut(s)	192, 224
BslI	CCNNNNNNNGG	1 cut(s)	632
BsmAI	GTCTC	4 cut(s)	109, 153, 321, 364
BsmBI	CGTCTC	4 cut(s)	109, 153, 321, 364
BsmFI	GGGAC	2 cut(s)	192, 224
BsnI	GGCC	3 cut(s)	95, 396, 636
BsoBI	CYCGRG	2 cut(s)	86, 128
Bsp1286I	GDGCHC	3 cut(s)	15, 120, 129
Bsp143I	GATC	2 cut(s)	398, 441
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	9 cut(s)	57, 70, 74, 108, 144, 154, 183, 393, 673
BspANI	GGCC	3 cut(s)	95, 396, 636
BspCNI	CTCAG	1 cut(s)	481
BspFNI	CGCG	5 cut(s)	164, 183, 249, 353, 375
BspLI	GGNNCC	3 cut(s)	96, 172, 240
BspPI	GGATC	2 cut(s)	393, 449
BspQI	GCTCTTC	2 cut(s)	314, 425
BspT107I	GGYRCC	1 cut(s)	170
BsrBI	CCGCTC	1 cut(s)	76
BsrFI	RCCGGY	2 cut(s)	34, 91
BssAI	RCCGGY	2 cut(s)	34, 91
BssECI	CCNNGG	6 cut(s)	60, 111, 174, 427, 524, 652
BssMI	GATC	2 cut(s)	398, 441
BssNI	GRCGYC	1 cut(s)	219
BssT1I	CCWWGG	3 cut(s)	60, 174, 427
Bst2UI	CCWGG	2 cut(s)	122, 525
Bst6I	CTCTTC	4 cut(s)	281, 314, 319, 425
BstACI	GRCGYC	1 cut(s)	219
BstC8I	GCNNGC	4 cut(s)	74, 93, 188, 305
BstDEI	CTNAG	1 cut(s)	489
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	686
BstFNI	CGCG	5 cut(s)	164, 183, 249, 353, 375
BstHHI	GCGC	3 cut(s)	143, 355, 377
BstKTI	GATC	2 cut(s)	401, 444
BstMAI	GTCTC	4 cut(s)	109, 153, 321, 364
BstMBI	GATC	2 cut(s)	398, 441
BstMCI	CGRYCG	2 cut(s)	70, 397
BstMWI	GCNNNNNNNGC	3 cut(s)	124, 372, 642
BstNI	CCWGG	2 cut(s)	122, 525
BstNSI	RCATGY	1 cut(s)	577
BstSCI	CCNGG	2 cut(s)	120, 523
BstUI	CGCG	5 cut(s)	164, 183, 249, 353, 375
BstV2I	GAAGAC	1 cut(s)	570
BstZI	CGGCCG	1 cut(s)	394
Bsu36I	CCTNAGG	1 cut(s)	489
BsuI	GTATCC	1 cut(s)	453
BsuRI	GGCC	3 cut(s)	95, 396, 636
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	686
Cac8I	GCNNGC	4 cut(s)	74, 93, 188, 305
CaiI	CAGNNNCTG	1 cut(s)	470
CfoI	GCGC	3 cut(s)	143, 355, 377
Cfr10I	RCCGGY	2 cut(s)	34, 91
Cfr13I	GGNCC	3 cut(s)	19, 94, 238
CseI	GACGC	5 cut(s)	170, 189, 208, 274, 381
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	6 cut(s)	175, 262, 358, 415, 545, 574
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	1 cut(s)	489
DpnI	GATC	2 cut(s)	400, 443
DpnII	GATC	2 cut(s)	398, 441
EaeI	YGGCCR	1 cut(s)	394
EagI	CGGCCG	1 cut(s)	394
Eam1104I	CTCTTC	4 cut(s)	281, 314, 319, 425
EarI	CTCTTC	4 cut(s)	281, 314, 319, 425
EciI	GGCGGA	2 cut(s)	46, 97
Ecl136II	GAGCTC	3 cut(s)	13, 118, 127
EclXI	CGGCCG	1 cut(s)	394
Eco130I	CCWWGG	3 cut(s)	60, 174, 427
Eco24I	GRGCYC	3 cut(s)	15, 120, 129
Eco32I	GATATC	1 cut(s)	562
Eco47I	GGWCC	2 cut(s)	19, 238
Eco52I	CGGCCG	1 cut(s)	394
Eco53kI	GAGCTC	3 cut(s)	13, 118, 127
Eco81I	CCTNAGG	1 cut(s)	489
Eco88I	CYCGRG	2 cut(s)	86, 128
EcoICRI	GAGCTC	3 cut(s)	13, 118, 127
EcoO109I	RGGNCCY	1 cut(s)	19
EcoRI	GAATTC	1 cut(s)	25
EcoRII	CCWGG	2 cut(s)	120, 523
EcoRV	GATATC	1 cut(s)	562
EcoT14I	CCWWGG	3 cut(s)	60, 174, 427
EcoT38I	GRGCYC	3 cut(s)	15, 120, 129
ErhI	CCWWGG	3 cut(s)	60, 174, 427
Esp3I	CGTCTC	4 cut(s)	109, 153, 321, 364
FaeI	CATG	6 cut(s)	178, 265, 361, 418, 548, 577
FaiI	YATR	8 cut(s)	176, 263, 359, 416, 536, 546, 575, 666
FaqI	GGGAC	2 cut(s)	192, 224
FatI	CATG	6 cut(s)	174, 261, 357, 414, 544, 573
FauI	CCCGC	2 cut(s)	81, 666
Fnu4HI	GCNGC	3 cut(s)	144, 184, 394
FokI	GGATG	1 cut(s)	673
FriOI	GRGCYC	3 cut(s)	15, 120, 129
Fsp4HI	GCNGC	3 cut(s)	144, 184, 394
FspBI	CTAG	2 cut(s)	428, 629
GlaI	GCGC	3 cut(s)	142, 354, 376
GluI	GCNGC	3 cut(s)	144, 184, 394
GsuI	CTGGAG	2 cut(s)	104, 388
HaeIII	GGCC	3 cut(s)	95, 396, 636
HapII	CCGG	2 cut(s)	35, 92
HgaI	GACGC	5 cut(s)	170, 189, 208, 274, 381
HhaI	GCGC	3 cut(s)	143, 355, 377
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	6 cut(s)	178, 265, 361, 418, 548, 577
Hin6I	GCGC	3 cut(s)	141, 353, 375
HinP1I	GCGC	3 cut(s)	141, 353, 375
HinfI	GANTC	4 cut(s)	5, 322, 411, 677
HpaII	CCGG	2 cut(s)	35, 92
HphI	GGTGA	1 cut(s)	268
Hpy188I	TCNGA	5 cut(s)	10, 321, 459, 591, 691
Hpy188III	TCNNGA	4 cut(s)	130, 241, 326, 408
Hpy99I	CGWCG	1 cut(s)	224
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	2 cut(s)	303, 707
HpyF10VI	GCNNNNNNNGC	3 cut(s)	124, 372, 642
HpyF3I	CTNAG	1 cut(s)	489
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	6 cut(s)	178, 265, 361, 418, 548, 577
HspAI	GCGC	3 cut(s)	141, 353, 375
KroI	GCCGGC	1 cut(s)	91
KroNI	GCCGGC	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	398, 441
LguI	GCTCTTC	2 cut(s)	314, 425
LmnI	GCTCC	7 cut(s)	10, 81, 115, 123, 124, 213, 273
LweI	GCATC	1 cut(s)	47
MaeI	CTAG	2 cut(s)	428, 629
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	2 cut(s)	400, 443
MbiI	CCGCTC	1 cut(s)	76
MboI	GATC	2 cut(s)	398, 441
MboII	GAAGA	7 cut(s)	145, 268, 301, 306, 412, 570, 573
MhlI	GDGCHC	3 cut(s)	15, 120, 129
MluCI	AATT	1 cut(s)	25
MluI	ACGCGT	2 cut(s)	162, 247
MlyI	GAGTC	2 cut(s)	420, 686
MmeI	TCCRAC	1 cut(s)	507
MroNI	GCCGGC	1 cut(s)	91
MroXI	GAANNNNTTC	1 cut(s)	453
MspA1I	CMGCKG	1 cut(s)	673
MspI	CCGG	2 cut(s)	35, 92
MspR9I	CCNGG	2 cut(s)	122, 525
MvaI	CCWGG	2 cut(s)	122, 525
MvnI	CGCG	5 cut(s)	164, 183, 249, 353, 375
MwoI	GCNNNNNNNGC	3 cut(s)	124, 372, 642
NaeI	GCCGGC	1 cut(s)	93
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	2 cut(s)	398, 441
NgoMIV	GCCGGC	1 cut(s)	91
NlaIII	CATG	6 cut(s)	178, 265, 361, 418, 548, 577
NlaIV	GGNNCC	3 cut(s)	96, 172, 240
NmeAIII	GCCGAG	2 cut(s)	136, 195
NmuCI	GTSAC	1 cut(s)	229
NspI	RCATGY	1 cut(s)	577
PaeR7I	CTCGAG	1 cut(s)	128
PciI	ACATGT	1 cut(s)	573
PciSI	GCTCTTC	2 cut(s)	314, 425
PdiI	GCCGGC	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	2 cut(s)	5, 322
Pfl23II	CGTACG	1 cut(s)	165
PfoI	TCCNGGA	1 cut(s)	120
PkrI	GCNGC	3 cut(s)	145, 185, 395
PleI	GAGTC	2 cut(s)	419, 685
PpsI	GAGTC	2 cut(s)	419, 685
PpuMI	RGGWCCY	1 cut(s)	19
PscI	ACATGT	1 cut(s)	573
Psp124BI	GAGCTC	3 cut(s)	15, 120, 129
Psp5II	RGGWCCY	1 cut(s)	19
Psp6I	CCWGG	2 cut(s)	120, 523
PspGI	CCWGG	2 cut(s)	120, 523
PspLI	CGTACG	1 cut(s)	165
PspN4I	GGNNCC	3 cut(s)	96, 172, 240
PspPI	GGNCC	3 cut(s)	19, 94, 238
PspPPI	RGGWCCY	1 cut(s)	19
PstNI	CAGNNNCTG	1 cut(s)	470
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SacI	GAGCTC	3 cut(s)	15, 120, 129
SapI	GCTCTTC	2 cut(s)	314, 425
SatI	GCNGC	3 cut(s)	144, 184, 394
Sau3AI	GATC	2 cut(s)	398, 441
Sau96I	GGNCC	3 cut(s)	19, 94, 238
SchI	GAGTC	2 cut(s)	420, 686
ScrFI	CCNGG	2 cut(s)	122, 525
SduI	GDGCHC	3 cut(s)	15, 120, 129
SfaNI	GCATC	1 cut(s)	47
Sfr274I	CTCGAG	1 cut(s)	128
SinI	GGWCC	2 cut(s)	19, 238
SlaI	CTCGAG	1 cut(s)	128
SmlI	CTYRAG	3 cut(s)	14, 128, 197
SmoI	CTYRAG	3 cut(s)	14, 128, 197
Sse9I	AATT	1 cut(s)	25
SsiI	CCGC	9 cut(s)	57, 70, 74, 108, 144, 154, 183, 393, 673
SspMI	CTAG	2 cut(s)	428, 629
SstI	GAGCTC	3 cut(s)	15, 120, 129
StyD4I	CCNGG	2 cut(s)	120, 523
StyI	CCWWGG	3 cut(s)	60, 174, 427
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	2 cut(s)	129, 325
TasI	AATT	1 cut(s)	25
TauI	GCSGC	3 cut(s)	146, 186, 396
TfiI	GAWTC	2 cut(s)	5, 322
TseFI	GTSAC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	229
TspGWI	ACGGA	1 cut(s)	91
VpaK11BI	GGWCC	2 cut(s)	19, 238
XapI	RAATTY	1 cut(s)	25
XceI	RCATGY	1 cut(s)	577
XcmI	CCANNNNNNNNNTGG	1 cut(s)	610
XhoI	CTCGAG	1 cut(s)	128
XmaJI	CCTAGG	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	453
XspI	CTAG	2 cut(s)	428, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.