AT2G01913

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013160
Physical Location & Seq
Reverse (-)
421608 .. 422643
1036 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G01913.1

Sequence Viewer

Length: 417 bp
ATGGACTTCGATTCCGCAGACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAAACCAATCAATTCGACGTTGAATTTTGTCCGGTTGAGCATCCTATTGAACCGGAGGAAGAAGATCGTCCGGTTAAATGTCCCGTACCAATATCATCTTCTCTCATCCACAAACCAAAGGAGAAATCGAAACCGGGGTGGGTTAAACACAGAGCCAGCAGCTACGAAACTCCGGTTTATCCACCGCCACGTCATCATGTACGTAACGTACGAAAGAGACACAACTCGTTTGACGTGGAAGGGAACAACAATTTCTTCACGAGATCTCATGATGATGACGAAACCACCTCTCGAAGATCCAACGTCACGTTCTACCGAGTTCTTCAACAAGTTCAGGAGTTCGAGTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

16.34

Weight (kDa)

5.25

Isoelectric Point (pI)

74.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01913
fragaria_vesca FvH4_4g26140 FvH4_4g26140
malus_domestica MD13G1015500.v1.1 MD16G1013000.v1.1
prunus_persica Prupe.1G338300_v2.0.a1 Prupe.1G338300_v2.0.a1
pyrus_communis pycom13g01310 pycom16g01220
rosa_laevigata RLG00000006736
rosa_multiflora Rmu_sc0000312.1_g000026
rosa_roxburghii Rroxscaffold_5G00375150
rosa_rugosa Rorug04G0271100.1
rosa_samantha Rh4AG325400 Rh4BG333200 Rh4CG348400 Rh4DG329800
rosa_wichuraiana Rw4G028180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 15, 251
AclWI GGATC 1 cut(s) 357
AcsI RAATTY 1 cut(s) 89
AfaI GTAC 3 cut(s) 153, 267, 276
AgsI TTSAA 3 cut(s) 89, 116, 392
AjiI CACGTC 2 cut(s) 257, 301
AjuI GAANNNNNNNTTGG 4 cut(s) 148, 180, 359, 391
AluBI AGCT 1 cut(s) 228
AluI AGCT 1 cut(s) 228
Alw26I GTCTC 2 cut(s) 35, 277
AlwI GGATC 1 cut(s) 357
ApeKI GCWGC 1 cut(s) 225
ApoI RAATTY 1 cut(s) 89
AsuC2I CCSGG 1 cut(s) 201
BauI CACGAG 1 cut(s) 325
BbvI GCAGC 1 cut(s) 237
BccI CCATC 1 cut(s) 46
BcnI CCSGG 1 cut(s) 201
BcoDI GTCTC 2 cut(s) 35, 277
BglII AGATCT 1 cut(s) 329
BisI GCNGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 201
BmgBI CACGTC 2 cut(s) 257, 301
BmrFI CCNGG 1 cut(s) 201
BmsI GCATC 1 cut(s) 115
BpuMI CCSGG 1 cut(s) 201
BsaAI YACGTR 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 200
BsaWI WCCGGW 4 cut(s) 97, 118, 136, 238
BsaXI ACNNNNNCTCC 1 cut(s) 395
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 2 cut(s) 106, 171
BseRI GAGGAG 1 cut(s) 53
BseXI GCAGC 1 cut(s) 237
BsiSI CCGG 5 cut(s) 98, 119, 137, 200, 239
BsiWI CGTACG 1 cut(s) 274
BslFI GGGAC 1 cut(s) 132
BsmAI GTCTC 2 cut(s) 35, 277
BsmFI GGGAC 1 cut(s) 132
Bsp143I GATC 3 cut(s) 130, 329, 362
BspACI CCGC 2 cut(s) 15, 251
BspHI TCATGA 1 cut(s) 334
BspPI GGATC 1 cut(s) 357
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 3 cut(s) 130, 329, 362
BssSI CACGAG 1 cut(s) 325
Bst2BI CACGAG 1 cut(s) 325
Bst4CI ACNGT 1 cut(s) 46
BstBAI YACGTR 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 223
BstF5I GGATG 2 cut(s) 106, 171
BstKTI GATC 3 cut(s) 133, 332, 365
BstMAI GTCTC 2 cut(s) 35, 277
BstMBI GATC 3 cut(s) 130, 329, 362
BstSCI CCNGG 1 cut(s) 199
BstSNI TACGTA 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 237
BstX2I RGATCY 2 cut(s) 329, 362
BstYI RGATCY 2 cut(s) 329, 362
BtrI CACGTC 2 cut(s) 257, 301
BtsCI GGATG 2 cut(s) 106, 171
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 223
CciI TCATGA 1 cut(s) 334
Csp6I GTAC 3 cut(s) 152, 266, 275
CviAII CATG 2 cut(s) 263, 335
CviJI RGCY 2 cut(s) 221, 228
CviKI_1 RGCY 2 cut(s) 221, 228
CviQI GTAC 3 cut(s) 152, 266, 275
DpnI GATC 3 cut(s) 132, 331, 364
DpnII GATC 3 cut(s) 130, 329, 362
Eco105I TACGTA 1 cut(s) 269
FaeI CATG 2 cut(s) 266, 338
FaiI YATR 2 cut(s) 264, 336
FaqI GGGAC 1 cut(s) 132
FatI CATG 2 cut(s) 262, 334
Fnu4HI GCNGC 1 cut(s) 226
FokI GGATG 2 cut(s) 93, 158
Fsp4HI GCNGC 1 cut(s) 226
GluI GCNGC 1 cut(s) 226
HapII CCGG 5 cut(s) 98, 119, 137, 200, 239
Hin1II CATG 2 cut(s) 266, 338
HinfI GANTC 2 cut(s) 11, 410
HpaII CCGG 5 cut(s) 98, 119, 137, 200, 239
Hpy188III TCNNGA 4 cut(s) 325, 335, 357, 401
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 299
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 7 cut(s) 84, 256, 268, 273, 300, 369, 374
HpySE526I ACGT 7 cut(s) 84, 256, 268, 273, 300, 369, 374
Hsp92II CATG 2 cut(s) 266, 338
Kzo9I GATC 3 cut(s) 130, 329, 362
LpnPI CCDG 7 cut(s) 111, 132, 150, 213, 235, 252, 386
Lsp1109I GCAGC 1 cut(s) 237
LweI GCATC 1 cut(s) 115
MaeII ACGT 7 cut(s) 84, 256, 268, 273, 300, 369, 374
MaeIII GTNAC 2 cut(s) 269, 370
MalI GATC 3 cut(s) 132, 331, 364
MboI GATC 3 cut(s) 130, 329, 362
MboII GAAGA 7 cut(s) 77, 137, 140, 156, 313, 372, 380
MflI RGATCY 2 cut(s) 329, 362
MluCI AATT 3 cut(s) 77, 89, 316
MmeI TCCRAC 1 cut(s) 390
MnlI CCTC 3 cut(s) 31, 115, 364
MseI TTAA 2 cut(s) 141, 210
MslI CAYNNNNRTG 1 cut(s) 339
MspI CCGG 5 cut(s) 98, 119, 137, 200, 239
MspR9I CCNGG 1 cut(s) 201
NciI CCSGG 1 cut(s) 201
NdeII GATC 3 cut(s) 130, 329, 362
NlaIII CATG 2 cut(s) 266, 338
NmuCI GTSAC 1 cut(s) 370
PagI TCATGA 1 cut(s) 334
PcsI WCGNNNNNNNCGW 1 cut(s) 274
PfeI GAWTC 1 cut(s) 11
Pfl23II CGTACG 1 cut(s) 274
PkrI GCNGC 1 cut(s) 227
Ppu21I YACGTR 1 cut(s) 269
PspLI CGTACG 1 cut(s) 274
PsuI RGATCY 2 cut(s) 329, 362
RsaI GTAC 3 cut(s) 153, 267, 276
RsaNI GTAC 3 cut(s) 152, 266, 275
RseI CAYNNNNRTG 1 cut(s) 339
SaqAI TTAA 2 cut(s) 141, 210
SatI GCNGC 1 cut(s) 226
Sau3AI GATC 3 cut(s) 130, 329, 362
ScrFI CCNGG 1 cut(s) 201
SetI ASST 9 cut(s) 87, 230, 259, 271, 276, 303, 356, 372, 377
SfaNI GCATC 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 339
SnaBI TACGTA 1 cut(s) 269
Sse9I AATT 3 cut(s) 77, 89, 316
SsiI CCGC 2 cut(s) 15, 251
StyD4I CCNGG 1 cut(s) 199
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 7 cut(s) 87, 259, 271, 276, 303, 372, 377
TaqI TCGA 5 cut(s) 9, 81, 194, 358, 408
TasI AATT 3 cut(s) 77, 89, 316
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 2 cut(s) 141, 210
Tru9I TTAA 2 cut(s) 141, 210
TscAI CASTG 1 cut(s) 51
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 1 cut(s) 225
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 1 cut(s) 78
TspRI CASTG 1 cut(s) 51
XapI RAATTY 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.