pycom16g01220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0013160
Physical Location & Seq
Forward (+)
762438 .. 763067
630 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g01220.3

Sequence Viewer

Length: 420 bp
ATGAAAAGAGAAAGGGAGCTGCAATTAAGGGCAGGTCCCAAACCCAATAAAGAAAAGAAAAAAAAGGGTTCAACTAAAGTAGTTCAGGAAATCCAAAAAAGACGAAAATGGTGGGAATCTTCATTCCACTGTGCAAATCATCCCACACCGCCACCTCTCTTACTCCTCCTACTTTTCATACTTTCAGCTTTCTCTTCATTGCTTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAGATCTTCTCAGCTTCTGGCATGCAACAACACTGCTATGAACAACATCTCTATGGGGTTTTCAAGTGGGGATGATTTTGACGGAGAGGAAGGCAAAGCTCCACTTTTATATGAAACGAGGGAGAACCAGCGCAGCAGCAGCGGGTTGAAGTCGACTTCGAGTTTTGGCCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.53

Weight (kDa)

9.95

Isoelectric Point (pI)

56.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01913
fragaria_vesca FvH4_4g26140 FvH4_4g26140
malus_domestica MD13G1015500.v1.1 MD16G1013000.v1.1
prunus_persica Prupe.1G338300_v2.0.a1 Prupe.1G338300_v2.0.a1
pyrus_communis pycom13g01310 pycom16g01220
rosa_laevigata RLG00000006736
rosa_multiflora Rmu_sc0000312.1_g000026
rosa_roxburghii Rroxscaffold_5G00375150
rosa_rugosa Rorug04G0271100.1
rosa_samantha Rh4AG325400 Rh4BG333200 Rh4CG348400 Rh4DG329800
rosa_wichuraiana Rw4G028180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 23
AccI GTMKAC 1 cut(s) 398
AciI CCGC 2 cut(s) 149, 387
AcoI YGGCCR 1 cut(s) 412
AgsI TTSAA 3 cut(s) 72, 309, 394
AluBI AGCT 4 cut(s) 19, 188, 259, 344
AluI AGCT 4 cut(s) 19, 188, 259, 344
AlwNI CAGNNNCTG 1 cut(s) 262
AoxI GGCC 1 cut(s) 412
ApeKI GCWGC 4 cut(s) 19, 378, 381, 384
AspLEI GCGC 1 cut(s) 378
AspS9I GGNCC 1 cut(s) 35
AvaII GGWCC 1 cut(s) 35
BbvI GCAGC 4 cut(s) 6, 390, 393, 396
BfuAI ACCTGC 1 cut(s) 23
BglII AGATCT 1 cut(s) 248
BisI GCNGC 4 cut(s) 20, 379, 382, 385
BlsI GCNGC 4 cut(s) 21, 380, 383, 386
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 37
Bse118I RCCGGY 1 cut(s) 414
Bse3DI GCAATG 1 cut(s) 197
BseGI GGATG 2 cut(s) 139, 322
BseMI GCAATG 1 cut(s) 197
BseMII CTCAG 1 cut(s) 269
BseRI GAGGAG 2 cut(s) 155, 197
BseXI GCAGC 4 cut(s) 6, 390, 393, 396
BshFI GGCC 1 cut(s) 414
BsiSI CCGG 1 cut(s) 415
BslFI GGGAC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 21
BsnI GGCC 1 cut(s) 414
Bsp143I GATC 1 cut(s) 248
BspACI CCGC 2 cut(s) 149, 387
BspANI GGCC 1 cut(s) 414
BspCNI CTCAG 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 197
BsrFI RCCGGY 1 cut(s) 414
BssAI RCCGGY 1 cut(s) 414
BssMI GATC 1 cut(s) 248
Bst4CI ACNGT 1 cut(s) 131
Bst6I CTCTTC 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 2 cut(s) 245, 255
BstF5I GGATG 2 cut(s) 139, 322
BstHHI GCGC 1 cut(s) 378
BstKTI GATC 1 cut(s) 251
BstMBI GATC 1 cut(s) 248
BstMWI GCNNNNNNNGC 1 cut(s) 384
BstNSI RCATGY 1 cut(s) 270
BstV1I GCAGC 4 cut(s) 6, 390, 393, 396
BstX2I RGATCY 1 cut(s) 248
BstYI RGATCY 1 cut(s) 248
BsuRI GGCC 1 cut(s) 414
BtsCI GGATG 2 cut(s) 139, 322
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 2 cut(s) 127, 276
BveI ACCTGC 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 268
CaiI CAGNNNCTG 1 cut(s) 262
CfoI GCGC 1 cut(s) 378
Cfr10I RCCGGY 1 cut(s) 414
Cfr13I GGNCC 1 cut(s) 35
CviAII CATG 1 cut(s) 267
CviJI RGCY 5 cut(s) 19, 188, 259, 344, 414
CviKI_1 RGCY 5 cut(s) 19, 188, 259, 344, 414
DdeI CTNAG 2 cut(s) 245, 255
DpnI GATC 1 cut(s) 250
DpnII GATC 1 cut(s) 248
EaeI YGGCCR 1 cut(s) 412
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 35
EcoO109I RGGNCCY 1 cut(s) 35
FaeI CATG 1 cut(s) 270
FaiI YATR 6 cut(s) 179, 268, 284, 299, 355, 357
FalI AAGNNNNNCTT 2 cut(s) 333, 365
FaqI GGGAC 1 cut(s) 21
FatI CATG 1 cut(s) 266
FauI CCCGC 1 cut(s) 380
FblI GTMKAC 1 cut(s) 398
Fnu4HI GCNGC 4 cut(s) 20, 379, 382, 385
FokI GGATG 2 cut(s) 126, 329
Fsp4HI GCNGC 4 cut(s) 20, 379, 382, 385
GlaI GCGC 1 cut(s) 377
GluI GCNGC 4 cut(s) 20, 379, 382, 385
HaeIII GGCC 1 cut(s) 414
HapII CCGG 1 cut(s) 415
HhaI GCGC 1 cut(s) 378
Hin1II CATG 1 cut(s) 270
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HincII GTYRAC 1 cut(s) 399
HindII GTYRAC 1 cut(s) 399
HinfI GANTC 1 cut(s) 116
HpaII CCGG 1 cut(s) 415
Hpy166II GTNNAC 1 cut(s) 399
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 1 cut(s) 399
HpyAV CCTTC 1 cut(s) 329
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4V TGCA 3 cut(s) 22, 134, 270
HpyF10VI GCNNNNNNNGC 1 cut(s) 384
HpyF3I CTNAG 2 cut(s) 245, 255
Hsp92II CATG 1 cut(s) 270
HspAI GCGC 1 cut(s) 376
Kzo9I GATC 1 cut(s) 248
LmnI GCTCC 2 cut(s) 16, 349
LpnPI CCDG 4 cut(s) 18, 71, 248, 386
Lsp1109I GCAGC 4 cut(s) 6, 390, 393, 396
MalI GATC 1 cut(s) 250
MboI GATC 1 cut(s) 248
MboII GAAGA 3 cut(s) 111, 186, 243
MflI RGATCY 1 cut(s) 248
MluCI AATT 1 cut(s) 23
MnlI CCTC 5 cut(s) 165, 176, 218, 325, 357
MseI TTAA 1 cut(s) 26
MslI CAYNNNNRTG 2 cut(s) 281, 296
MspA1I CMGCKG 1 cut(s) 387
MspI CCGG 1 cut(s) 415
MwoI GCNNNNNNNGC 1 cut(s) 384
NdeII GATC 1 cut(s) 248
NlaIII CATG 1 cut(s) 270
NlaIV GGNNCC 1 cut(s) 37
NspI RCATGY 1 cut(s) 270
PaeI GCATGC 1 cut(s) 270
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 4 cut(s) 21, 380, 383, 386
PpuMI RGGWCCY 1 cut(s) 35
Psp5II RGGWCCY 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 1 cut(s) 35
PspPPI RGGWCCY 1 cut(s) 35
PstNI CAGNNNCTG 1 cut(s) 262
PsuI RGATCY 1 cut(s) 248
RseI CAYNNNNRTG 2 cut(s) 281, 296
SalI GTCGAC 1 cut(s) 397
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 4 cut(s) 20, 379, 382, 385
Sau3AI GATC 1 cut(s) 248
Sau96I GGNCC 1 cut(s) 35
SetI ASST 6 cut(s) 21, 37, 157, 190, 261, 346
SgeI CNNG 8 cut(s) 45, 98, 275, 279, 321, 375, 385, 400
SinI GGWCC 1 cut(s) 35
SmiMI CAYNNNNRTG 2 cut(s) 281, 296
SphI GCATGC 1 cut(s) 270
Sse9I AATT 1 cut(s) 23
SsiI CCGC 2 cut(s) 149, 387
TaaI ACNGT 1 cut(s) 131
TaqI TCGA 2 cut(s) 398, 404
TasI AATT 1 cut(s) 23
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TscAI CASTG 2 cut(s) 134, 283
TseI GCWGC 4 cut(s) 19, 378, 381, 384
TspDTI ATGAA 6 cut(s) 17, 111, 166, 186, 299, 372
TspGWI ACGGA 1 cut(s) 342
TspRI CASTG 2 cut(s) 134, 283
VpaK11BI GGWCC 1 cut(s) 35
XceI RCATGY 1 cut(s) 270
XmiI GTMKAC 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.