Prupe.1G338300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013160
Physical Location & Seq
Reverse (-)
31870804 .. 31872636
1833 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G338300.2

Sequence Viewer

Length: 573 bp
ATGAACAACATCTCTATGGGATTTTCATGTGGGGATGATTTTGAAGGAGAGGAAAGTGAAGTTGCTCTTTTAGATGAAACGAGGGAGAAGCAGCAACACAGCAGCTGGGGGTGTGGTATGGAAGCTCCTCATAATCATGTGCAGCTTGAAGTCGACTTCCAGTTCTGGCCAGTAGAACATCCTTTGGAGCCACCCGATGAAGATCGCCCTGTCAAATGCCCCATGCCCGACTCTTCTGTTATCAATATTGATATTGTCTCATGTAAAATGCATTTACAGGATGGAGGAAGGCAGGAGAAAAGGTCGTCAGAGAGCAGCGCCATGCGTAAGAGAACAGAAGTATCATCTGCTGCTGCAGCAACTTATAGCAAACCAAGAACGGATCAGATGGTGGTGGCAGTGGCAGAGCCGCCTCCAGCTGTTCGAGCAGTGCGTAAGAGGCATCACAACACTCTCACCCGCGGCGACCATATGATATCACCGCTAAGGCGAATGCCACCCATTCCTTCTCTCCCAACCCAGAGCATTACCATCTTTCAAATGCTTCAGCAGTTAGACAAGTTCGAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.42

Weight (kDa)

5.6

Isoelectric Point (pI)

77.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01913
fragaria_vesca FvH4_4g26140 FvH4_4g26140
malus_domestica MD13G1015500.v1.1 MD16G1013000.v1.1
prunus_persica Prupe.1G338300_v2.0.a1 Prupe.1G338300_v2.0.a1
pyrus_communis pycom13g01310 pycom16g01220
rosa_laevigata RLG00000006736
rosa_multiflora Rmu_sc0000312.1_g000026
rosa_roxburghii Rroxscaffold_5G00375150
rosa_rugosa Rorug04G0271100.1
rosa_samantha Rh4AG325400 Rh4BG333200 Rh4CG348400 Rh4DG329800
rosa_wichuraiana Rw4G028180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 153
AccII CGCG 1 cut(s) 462
AciI CCGC 4 cut(s) 410, 460, 462, 482
AclWI GGATC 1 cut(s) 390
AcoI YGGCCR 1 cut(s) 167
AcuI CTGAAG 1 cut(s) 530
AgsI TTSAA 3 cut(s) 44, 149, 539
AluBI AGCT 4 cut(s) 105, 125, 145, 419
AluI AGCT 4 cut(s) 105, 125, 145, 419
Alw26I GTCTC 1 cut(s) 262
AlwI GGATC 1 cut(s) 390
AlwNI CAGNNNCTG 1 cut(s) 105
AoxI GGCC 1 cut(s) 167
ApeKI GCWGC 7 cut(s) 91, 102, 142, 315, 350, 353, 356
AspLEI GCGC 1 cut(s) 320
AsuHPI GGTGA 2 cut(s) 448, 471
BaeI ACNNNNGTAYC 2 cut(s) 324, 357
BalI TGGCCA 1 cut(s) 169
BbvI GCAGC 7 cut(s) 103, 114, 154, 327, 337, 340, 368
BccI CCATC 3 cut(s) 275, 382, 539
BcoDI GTCTC 1 cut(s) 262
BfmI CTRYAG 1 cut(s) 354
BfoI RGCGCY 1 cut(s) 321
BisI GCNGC 9 cut(s) 92, 103, 143, 316, 351, 354, 357, 410, 463
BlsI GCNGC 9 cut(s) 93, 104, 144, 317, 352, 355, 358, 411, 464
BmiI GGNNCC 1 cut(s) 189
BmsI GCATC 1 cut(s) 451
BpmI CTGGAG 1 cut(s) 399
Bpu10I CCTNAGC 1 cut(s) 485
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 460
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bse1I ACTGG 2 cut(s) 160, 170
Bse8I GATNNNNATC 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 460
BseGI GGATG 3 cut(s) 40, 178, 286
BseJI GATNNNNATC 1 cut(s) 201
BseNI ACTGG 2 cut(s) 160, 170
BseRI GAGGAG 1 cut(s) 117
BseXI GCAGC 7 cut(s) 103, 114, 154, 327, 337, 340, 368
BseYI CCCAGC 1 cut(s) 105
BsgI GTGCAG 1 cut(s) 161
Bsh1236I CGCG 1 cut(s) 462
BshFI GGCC 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 262
BsmI GAATGC 1 cut(s) 498
BsnI GGCC 1 cut(s) 169
Bsp143I GATC 2 cut(s) 202, 382
BspACI CCGC 4 cut(s) 410, 460, 462, 482
BspANI GGCC 1 cut(s) 169
BspFNI CGCG 1 cut(s) 462
BspLI GGNNCC 1 cut(s) 189
BspMAI CTGCAG 1 cut(s) 358
BspPI GGATC 1 cut(s) 390
BsrI ACTGG 2 cut(s) 160, 170
BssECI CCNNGG 1 cut(s) 460
BssMI GATC 2 cut(s) 202, 382
Bst6I CTCTTC 1 cut(s) 238
BstDEI CTNAG 1 cut(s) 485
BstDSI CCRYGG 1 cut(s) 460
BstF5I GGATG 3 cut(s) 40, 178, 286
BstFNI CGCG 1 cut(s) 462
BstH2I RGCGCY 1 cut(s) 321
BstHHI GCGC 1 cut(s) 320
BstKTI GATC 2 cut(s) 205, 385
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 2 cut(s) 202, 382
BstMWI GCNNNNNNNGC 3 cut(s) 356, 425, 439
BstSFI CTRYAG 1 cut(s) 354
BstUI CGCG 1 cut(s) 462
BstV1I GCAGC 7 cut(s) 103, 114, 154, 327, 337, 340, 368
BsuRI GGCC 1 cut(s) 169
BtgI CCRYGG 1 cut(s) 460
BtsCI GGATG 3 cut(s) 40, 178, 286
BtsI GCAGTG 2 cut(s) 405, 435
BtsIMutI CAGTG 2 cut(s) 405, 435
CaiI CAGNNNCTG 1 cut(s) 105
CfoI GCGC 1 cut(s) 320
Cfr42I CCGCGG 1 cut(s) 463
CviAII CATG 5 cut(s) 27, 137, 223, 261, 322
CviJI RGCY 7 cut(s) 105, 125, 145, 169, 190, 409, 419
CviKI_1 RGCY 7 cut(s) 105, 125, 145, 169, 190, 409, 419
DdeI CTNAG 1 cut(s) 485
DpnI GATC 2 cut(s) 204, 384
DpnII GATC 2 cut(s) 202, 382
EaeI YGGCCR 1 cut(s) 167
Eam1104I CTCTTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 238
Eco32I GATATC 1 cut(s) 477
Eco57I CTGAAG 1 cut(s) 530
EcoRV GATATC 1 cut(s) 477
EcoT22I ATGCAT 1 cut(s) 273
FaeI CATG 5 cut(s) 30, 140, 226, 264, 325
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FatI CATG 5 cut(s) 26, 136, 222, 260, 321
FauI CCCGC 1 cut(s) 467
FauNDI CATATG 1 cut(s) 471
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 9 cut(s) 92, 103, 143, 316, 351, 354, 357, 410, 463
FokI GGATG 3 cut(s) 47, 165, 293
Fsp4HI GCNGC 9 cut(s) 92, 103, 143, 316, 351, 354, 357, 410, 463
GlaI GCGC 1 cut(s) 319
GluI GCNGC 9 cut(s) 92, 103, 143, 316, 351, 354, 357, 410, 463
GsaI CCCAGC 1 cut(s) 109
GsuI CTGGAG 1 cut(s) 399
HaeII RGCGCY 1 cut(s) 321
HaeIII GGCC 1 cut(s) 169
HhaI GCGC 1 cut(s) 320
Hin1II CATG 5 cut(s) 30, 140, 226, 264, 325
Hin6I GCGC 1 cut(s) 318
HinP1I GCGC 1 cut(s) 318
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 2 cut(s) 230, 566
HphI GGTGA 2 cut(s) 448, 471
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 2 cut(s) 310, 387
Hpy188III TCNNGA 1 cut(s) 570
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 3 cut(s) 38, 282, 516
HpyCH4V TGCA 3 cut(s) 142, 271, 356
HpyF10VI GCNNNNNNNGC 3 cut(s) 356, 425, 439
HpyF3I CTNAG 1 cut(s) 485
Hsp92II CATG 5 cut(s) 30, 140, 226, 264, 325
HspAI GCGC 1 cut(s) 318
KspI CCGCGG 1 cut(s) 463
Kzo9I GATC 2 cut(s) 202, 382
LmnI GCTCC 2 cut(s) 130, 187
LpnPI CCDG 9 cut(s) 91, 151, 173, 183, 222, 263, 278, 429, 533
Lsp1109I GCAGC 7 cut(s) 103, 114, 154, 327, 337, 340, 368
LweI GCATC 1 cut(s) 451
MalI GATC 2 cut(s) 204, 384
MboI GATC 2 cut(s) 202, 382
MboII GAAGA 2 cut(s) 212, 225
MlsI TGGCCA 1 cut(s) 169
MluNI TGGCCA 1 cut(s) 169
MlyI GAGTC 1 cut(s) 224
MnlI CCTC 6 cut(s) 43, 75, 138, 278, 423, 432
Mox20I TGGCCA 1 cut(s) 169
Mph1103I ATGCAT 1 cut(s) 273
MscI TGGCCA 1 cut(s) 169
MslI CAYNNNNRTG 2 cut(s) 14, 135
Msp20I TGGCCA 1 cut(s) 169
MspA1I CMGCKG 3 cut(s) 105, 419, 462
Mva1269I GAATGC 1 cut(s) 498
MvnI CGCG 1 cut(s) 462
MwoI GCNNNNNNNGC 3 cut(s) 356, 425, 439
NdeI CATATG 1 cut(s) 471
NdeII GATC 2 cut(s) 202, 382
NlaIII CATG 5 cut(s) 30, 140, 226, 264, 325
NlaIV GGNNCC 1 cut(s) 189
NsiI ATGCAT 1 cut(s) 273
PcsI WCGNNNNNNNCGW 1 cut(s) 430
PctI GAATGC 1 cut(s) 498
PkrI GCNGC 9 cut(s) 93, 104, 144, 317, 352, 355, 358, 411, 464
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PspFI CCCAGC 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 189
PstI CTGCAG 1 cut(s) 358
PstNI CAGNNNCTG 1 cut(s) 105
PvuII CAGCTG 2 cut(s) 105, 419
RseI CAYNNNNRTG 2 cut(s) 14, 135
SacII CCGCGG 1 cut(s) 463
SalI GTCGAC 1 cut(s) 152
SatI GCNGC 9 cut(s) 92, 103, 143, 316, 351, 354, 357, 410, 463
Sau3AI GATC 2 cut(s) 202, 382
SchI GAGTC 1 cut(s) 224
SetI ASST 5 cut(s) 107, 127, 147, 305, 421
SfaNI GCATC 1 cut(s) 451
SfcI CTRYAG 1 cut(s) 354
Sfr303I CCGCGG 1 cut(s) 463
SgrBI CCGCGG 1 cut(s) 463
SmiMI CAYNNNNRTG 2 cut(s) 14, 135
SsiI CCGC 4 cut(s) 410, 460, 462, 482
SspI AATATT 1 cut(s) 247
TaqI TCGA 3 cut(s) 153, 424, 564
TauI GCSGC 2 cut(s) 412, 465
TscAI CASTG 2 cut(s) 405, 435
TseI GCWGC 7 cut(s) 91, 102, 142, 315, 350, 353, 356
TspDTI ATGAA 4 cut(s) 15, 17, 90, 213
TspGWI ACGGA 1 cut(s) 395
TspRI CASTG 2 cut(s) 405, 435
XmiI GTMKAC 1 cut(s) 153
Zsp2I ATGCAT 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.