Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0013160

Physical Location & Seq

Genomic Coordinates Reverse (-)

27671304 .. 27672831

Gene Structure 1528 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGTCTTTGCTCAGCAGCTTTGTCTTTTCATCAATCTTTTCCTACCTCTCCCACTCCAGAAGAGAACAAATTTGCTCAGCTTCAGCTACCATGTCTTCTACAATATGAACAATAACAATAGTATCTCTATGGCATTTTCATGTGGAAGTCATTATTATGATGGAGAAGAACCAGAAGTTCCACTGATAAATGAAACAAAGAGGTGTGCTGCTATGGATGTTCAAGTTCACAATGAGCTTCATGAAGGTCAAGTAGAGCTATTGGACTTTGAATTCTGGCCGGTCGAACATCCTTCAGAGCCGCCCGATGAGGATCACCCCCTGAAATGCCCAATGCCGGACTCTTCTGTTATCAATGATGGAGGAACAGGAAGGGTTTCTGAGAGCAACTATAAGAGCTCAATGCCGCGTAAGAGAACAGAAGTTTCTTCTCCTTGTTTTATGGAGATGGTAGATCAGCCTCCTGTTCCTGTTGCTGTTCCGGTGAGAACAGTGAGGAAGAGGCATCACACTCTCACCCGCGGCGGGGGTGAACATGTCATATCCCCTCTGAGGAGAATGCAGCCGCATCCGCCACGCCCTCTACCGGCTCAGAACATCACTGTCTTTCAAATGCTTCAGCAGCTGGACAAGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

24.18

Weight (kDa)

6.04

Isoelectric Point (pI)

68.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01913
fragaria_vesca	FvH4_4g26140 FvH4_4g26140
malus_domestica	MD13G1015500.v1.1 MD16G1013000.v1.1
prunus_persica	Prupe.1G338300_v2.0.a1 Prupe.1G338300_v2.0.a1
pyrus_communis	pycom13g01310 pycom16g01220
rosa_laevigata	RLG00000006736
rosa_multiflora	Rmu_sc0000312.1_g000026
rosa_roxburghii	Rroxscaffold_5G00375150
rosa_rugosa	Rorug04G0271100.1
rosa_samantha	Rh4AG325400 Rh4BG333200 Rh4CG348400 Rh4DG329800
rosa_wichuraiana	Rw4G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	409, 522
AciI	CCGC	7 cut(s)	302, 407, 520, 522, 525, 566, 572
AclWI	GGATC	1 cut(s)	321
AcoI	YGGCCR	1 cut(s)	278
AcsI	RAATTY	2 cut(s)	70, 272
AcuI	CTGAAG	3 cut(s)	67, 279, 602
AfiI	CCNNNNNNNGG	5 cut(s)	337, 525, 526, 552, 586
AflIII	ACRYGT	1 cut(s)	535
AgsI	TTSAA	3 cut(s)	224, 272, 611
AluBI	AGCT	7 cut(s)	19, 81, 87, 238, 259, 399, 625
AluI	AGCT	7 cut(s)	19, 81, 87, 238, 259, 399, 625
Alw21I	GWGCWC	1 cut(s)	401
AlwI	GGATC	1 cut(s)	321
AlwNI	CAGNNNCTG	1 cut(s)	625
AoxI	GGCC	1 cut(s)	278
ApeKI	GCWGC	4 cut(s)	16, 209, 562, 622
ApoI	RAATTY	2 cut(s)	70, 272
Asp700I	GAANNNNTTC	1 cut(s)	376
AsuHPI	GGTGA	4 cut(s)	308, 496, 508, 542
BaeI	ACNNNNGTAYC	2 cut(s)	106, 139
BanII	GRGCYC	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	401
BbvI	GCAGC	4 cut(s)	28, 196, 574, 634
BccI	CCATC	3 cut(s)	155, 353, 442
BisI	GCNGC	8 cut(s)	17, 210, 302, 407, 523, 563, 566, 623
BlpI	GCTNAGC	2 cut(s)	12, 77
BlsI	GCNGC	8 cut(s)	18, 211, 303, 408, 524, 564, 567, 624
BmsI	GCATC	2 cut(s)	514, 577
BpiI	GAAGAC	1 cut(s)	88
BpmI	CTGGAG	1 cut(s)	41
Bpu1102I	GCTNAGC	2 cut(s)	12, 77
BsaBI	GATNNNNATC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	520
BsaWI	WCCGGW	1 cut(s)	481
Bsc4I	CCNNNNNNNGG	5 cut(s)	337, 525, 526, 552, 586
Bse118I	RCCGGY	2 cut(s)	280, 586
Bse8I	GATNNNNATC	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	520
BseGI	GGATG	3 cut(s)	223, 289, 568
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	5 cut(s)	337, 525, 526, 552, 586
BseMII	CTCAG	5 cut(s)	26, 91, 372, 542, 605
BseRI	GAGGAG	1 cut(s)	568
BseXI	GCAGC	4 cut(s)	28, 196, 574, 634
Bsh1236I	CGCG	2 cut(s)	409, 522
Bsh1285I	CGRYCG	1 cut(s)	285
BshFI	GGCC	1 cut(s)	280
BsiEI	CGRYCG	1 cut(s)	285
BsiHKAI	GWGCWC	1 cut(s)	401
BsiSI	CCGG	4 cut(s)	281, 338, 482, 587
BslI	CCNNNNNNNGG	5 cut(s)	337, 525, 526, 552, 586
BsmI	GAATGC	1 cut(s)	564
BsnI	GGCC	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp143I	GATC	2 cut(s)	313, 454
Bsp1720I	GCTNAGC	2 cut(s)	12, 77
BspACI	CCGC	7 cut(s)	302, 407, 520, 522, 525, 566, 572
BspANI	GGCC	1 cut(s)	280
BspCNI	CTCAG	5 cut(s)	25, 90, 373, 543, 604
BspFNI	CGCG	2 cut(s)	409, 522
BspHI	TCATGA	1 cut(s)	241
BspPI	GGATC	1 cut(s)	321
BsrFI	RCCGGY	2 cut(s)	280, 586
BssAI	RCCGGY	2 cut(s)	280, 586
BssECI	CCNNGG	1 cut(s)	520
BssMI	GATC	2 cut(s)	313, 454
Bst4CI	ACNGT	2 cut(s)	493, 604
Bst6I	CTCTTC	3 cut(s)	56, 349, 494
BstDEI	CTNAG	5 cut(s)	12, 77, 381, 551, 591
BstDSI	CCRYGG	1 cut(s)	520
BstF5I	GGATG	3 cut(s)	223, 289, 568
BstFNI	CGCG	2 cut(s)	409, 522
BstKTI	GATC	2 cut(s)	316, 457
BstMBI	GATC	2 cut(s)	313, 454
BstMCI	CGRYCG	1 cut(s)	285
BstMWI	GCNNNNNNNGC	2 cut(s)	571, 622
BstNSI	RCATGY	1 cut(s)	539
BstUI	CGCG	2 cut(s)	409, 522
BstV1I	GCAGC	4 cut(s)	28, 196, 574, 634
BstV2I	GAAGAC	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	280
BtgI	CCRYGG	1 cut(s)	520
BtsCI	GGATG	3 cut(s)	223, 289, 568
BtsIMutI	CAGTG	3 cut(s)	182, 498, 600
CaiI	CAGNNNCTG	1 cut(s)	625
CciI	TCATGA	1 cut(s)	241
Cfr10I	RCCGGY	2 cut(s)	280, 586
Cfr42I	CCGCGG	1 cut(s)	523
CviAII	CATG	4 cut(s)	92, 141, 242, 536
DdeI	CTNAG	5 cut(s)	12, 77, 381, 551, 591
DpnI	GATC	2 cut(s)	315, 456
DpnII	GATC	2 cut(s)	313, 454
EaeI	YGGCCR	1 cut(s)	278
Eam1104I	CTCTTC	3 cut(s)	56, 349, 494
EarI	CTCTTC	3 cut(s)	56, 349, 494
EciI	GGCGGA	1 cut(s)	561
Ecl136II	GAGCTC	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	401
Eco53kI	GAGCTC	1 cut(s)	399
Eco57I	CTGAAG	3 cut(s)	67, 279, 602
EcoICRI	GAGCTC	1 cut(s)	399
EcoRI	GAATTC	1 cut(s)	272
EcoT38I	GRGCYC	1 cut(s)	401
FaeI	CATG	4 cut(s)	95, 144, 245, 539
FatI	CATG	4 cut(s)	91, 140, 241, 535
FauI	CCCGC	2 cut(s)	518, 527
Fnu4HI	GCNGC	8 cut(s)	17, 210, 302, 407, 523, 563, 566, 623
FokI	GGATG	3 cut(s)	230, 276, 555
FriOI	GRGCYC	1 cut(s)	401
Fsp4HI	GCNGC	8 cut(s)	17, 210, 302, 407, 523, 563, 566, 623
GluI	GCNGC	8 cut(s)	17, 210, 302, 407, 523, 563, 566, 623
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	280
HapII	CCGG	4 cut(s)	281, 338, 482, 587
Hin1II	CATG	4 cut(s)	95, 144, 245, 539
HinfI	GANTC	1 cut(s)	341
HpaII	CCGG	4 cut(s)	281, 338, 482, 587
HphI	GGTGA	4 cut(s)	308, 496, 508, 542
Hpy166II	GTNNAC	2 cut(s)	229, 533
Hpy188I	TCNGA	4 cut(s)	298, 382, 552, 594
Hpy188III	TCNNGA	3 cut(s)	58, 242, 636
Hpy8I	GTNNAC	2 cut(s)	229, 533
HpyAV	CCTTC	3 cut(s)	239, 303, 366
HpyCH4III	ACNGT	2 cut(s)	493, 604
HpyCH4V	TGCA	1 cut(s)	562
HpyF10VI	GCNNNNNNNGC	2 cut(s)	571, 622
HpyF3I	CTNAG	5 cut(s)	12, 77, 381, 551, 591
Hsp92II	CATG	4 cut(s)	95, 144, 245, 539
KspI	CCGCGG	1 cut(s)	523
Kzo9I	GATC	2 cut(s)	313, 454
Lsp1109I	GCAGC	4 cut(s)	28, 196, 574, 634
LweI	GCATC	2 cut(s)	514, 577
MalI	GATC	2 cut(s)	315, 456
MboI	GATC	2 cut(s)	313, 454
MboII	GAAGA	6 cut(s)	73, 88, 179, 336, 420, 511
MhlI	GDGCHC	1 cut(s)	401
MluCI	AATT	2 cut(s)	70, 272
MlyI	GAGTC	1 cut(s)	335
MroXI	GAANNNNTTC	1 cut(s)	376
MslI	CAYNNNNRTG	2 cut(s)	139, 156
MspA1I	CMGCKG	2 cut(s)	522, 625
MspI	CCGG	4 cut(s)	281, 338, 482, 587
Mva1269I	GAATGC	1 cut(s)	564
MvnI	CGCG	2 cut(s)	409, 522
MwoI	GCNNNNNNNGC	2 cut(s)	571, 622
NdeII	GATC	2 cut(s)	313, 454
NlaIII	CATG	4 cut(s)	95, 144, 245, 539
NspI	RCATGY	1 cut(s)	539
PagI	TCATGA	1 cut(s)	241
PciI	ACATGT	1 cut(s)	535
PctI	GAATGC	1 cut(s)	564
PdmI	GAANNNNTTC	1 cut(s)	376
PkrI	GCNGC	8 cut(s)	18, 211, 303, 408, 524, 564, 567, 624
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
PscI	ACATGT	1 cut(s)	535
Psp124BI	GAGCTC	1 cut(s)	401
PstNI	CAGNNNCTG	1 cut(s)	625
PvuII	CAGCTG	1 cut(s)	625
RseI	CAYNNNNRTG	2 cut(s)	139, 156
SacI	GAGCTC	1 cut(s)	401
SacII	CCGCGG	1 cut(s)	523
SatI	GCNGC	8 cut(s)	17, 210, 302, 407, 523, 563, 566, 623
Sau3AI	GATC	2 cut(s)	313, 454
SchI	GAGTC	1 cut(s)	335
SduI	GDGCHC	1 cut(s)	401
SfaNI	GCATC	2 cut(s)	514, 577
Sfr303I	CCGCGG	1 cut(s)	523
SgrBI	CCGCGG	1 cut(s)	523
SmiMI	CAYNNNNRTG	2 cut(s)	139, 156
Sse9I	AATT	2 cut(s)	70, 272
SsiI	CCGC	7 cut(s)	302, 407, 520, 522, 525, 566, 572
SstI	GAGCTC	1 cut(s)	401
TaaI	ACNGT	2 cut(s)	493, 604
TaqI	TCGA	1 cut(s)	285
TasI	AATT	2 cut(s)	70, 272
TauI	GCSGC	4 cut(s)	304, 409, 525, 568
TscAI	CASTG	3 cut(s)	189, 498, 607
TseI	GCWGC	4 cut(s)	16, 209, 562, 622
TspDTI	ATGAA	6 cut(s)	19, 122, 129, 207, 230, 258
TspRI	CASTG	3 cut(s)	189, 498, 607
XapI	RAATTY	2 cut(s)	70, 272
XceI	RCATGY	1 cut(s)	539
XmnI	GAANNNNTTC	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.