pycom13g01310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0013160
Physical Location & Seq
Forward (+)
855361 .. 856578
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g01310.1

Sequence Viewer

Length: 639 bp
ATGCCCCTCAGCTTTCTCTTTCCTATATTTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAAATTTTCTCAGCTTCTGGCATGCAACAACACTACTATGAACTACATCTCTATGGGATTTTCATGTGAGGATGATTTTGACGGAAAGGAAGGCGAAGCTCCACTTTTATATGAAACGAGGGAGAATCAACACAGAAGCAGCAGGTGCATGGATGTTCATAATCATGACCATCATATGCAGGTTGAAGTCGACTTCGAGTTTTGGCCGGTGGAACATCCTCTTGAGCCACCTGATGAGGATCGCCCTGTCAAATGCCCGATGCCCGACTCTTCTGTCATTAATGGAGGAGGGAGGAAGGAAAAAAGGCTTTCAGAGAGCAATAGCATGCGTAAGAGGACAGAAGCATCATCTGCGCCTGGAGCAGCTTATAGCAATCAAGGATTAATGAATCAGACGGTAGCGGCAGTGGCAACGCCACCTCCTGTTCGAGCAGTGCGTAAGAGGCACCACCACACACTCACCCGCGGCGACCATATGATATCACCTCTGAGAAGGATGCCACCTCTTCCTTCTCTCCCAACGCAGAGCATCACCGTCTTTCAAATGCTCCAGCAGTTCGACAAGTTCGACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.97

Weight (kDa)

6.35

Isoelectric Point (pI)

58.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01913
fragaria_vesca FvH4_4g26140 FvH4_4g26140
malus_domestica MD13G1015500.v1.1 MD16G1013000.v1.1
prunus_persica Prupe.1G338300_v2.0.a1 Prupe.1G338300_v2.0.a1
pyrus_communis pycom13g01310 pycom16g01220
rosa_laevigata RLG00000006736
rosa_multiflora Rmu_sc0000312.1_g000026
rosa_roxburghii Rroxscaffold_5G00375150
rosa_rugosa Rorug04G0271100.1
rosa_samantha Rh4AG325400 Rh4BG333200 Rh4CG348400 Rh4DG329800
rosa_wichuraiana Rw4G028180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 195
AasI GACNNNNNNGTC 1 cut(s) 335
Acc36I ACCTGC 2 cut(s) 195, 232
AccB1I GGYRCC 1 cut(s) 507
AccI GTMKAC 1 cut(s) 252
AccII CGCG 1 cut(s) 528
AciI CCGC 3 cut(s) 464, 526, 528
AclWI GGATC 1 cut(s) 309
AcoI YGGCCR 1 cut(s) 266
AcsI RAATTY 1 cut(s) 65
AgsI TTSAA 2 cut(s) 248, 605
AjnI CCWGG 1 cut(s) 418
AluBI AGCT 4 cut(s) 12, 76, 161, 428
AluI AGCT 4 cut(s) 12, 76, 161, 428
AlwI GGATC 1 cut(s) 309
AlwNI CAGNNNCTG 1 cut(s) 79
AoxI GGCC 1 cut(s) 266
ApeKI GCWGC 2 cut(s) 201, 425
ApoI RAATTY 1 cut(s) 65
AseI ATTAAT 2 cut(s) 342, 446
AspLEI GCGC 1 cut(s) 418
AsuHPI GGTGA 3 cut(s) 514, 537, 586
BanI GGYRCC 1 cut(s) 507
BbvCI CCTCAGC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 213, 437
BccI CCATC 1 cut(s) 240
BciT130I CCWGG 1 cut(s) 420
BfuAI ACCTGC 2 cut(s) 195, 232
BisI GCNGC 4 cut(s) 202, 426, 465, 529
BlsI GCNGC 4 cut(s) 203, 427, 466, 530
Bme1390I CCNGG 1 cut(s) 420
BmiI GGNNCC 1 cut(s) 509
BmrFI CCNGG 1 cut(s) 420
BmsI GCATC 4 cut(s) 312, 416, 549, 600
BpmI CTGGAG 2 cut(s) 441, 596
Bpu10I CCTNAGC 1 cut(s) 8
BpuEI CTTGAG 1 cut(s) 305
BsaBI GATNNNNATC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 526
BsaXI ACNNNNNCTCC 2 cut(s) 466, 496
Bse118I RCCGGY 1 cut(s) 268
Bse8I GATNNNNATC 1 cut(s) 300
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 526
BseGI GGATG 4 cut(s) 139, 220, 277, 564
BseJI GATNNNNATC 1 cut(s) 300
BseMII CTCAG 3 cut(s) 22, 86, 542
BseRI GAGGAG 1 cut(s) 363
BseXI GCAGC 2 cut(s) 213, 437
Bsh1236I CGCG 1 cut(s) 528
BshFI GGCC 1 cut(s) 268
BshNI GGYRCC 1 cut(s) 507
BsiSI CCGG 1 cut(s) 269
BsnI GGCC 1 cut(s) 268
Bsp143I GATC 1 cut(s) 301
BspACI CCGC 3 cut(s) 464, 526, 528
BspANI GGCC 1 cut(s) 268
BspCNI CTCAG 3 cut(s) 21, 85, 543
BspFNI CGCG 1 cut(s) 528
BspHI TCATGA 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 509
BspMI ACCTGC 2 cut(s) 195, 232
BspPI GGATC 1 cut(s) 309
BspT107I GGYRCC 1 cut(s) 507
BsrFI RCCGGY 1 cut(s) 268
BssAI RCCGGY 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 526
BssMI GATC 1 cut(s) 301
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 2 cut(s) 460, 598
Bst6I CTCTTC 2 cut(s) 337, 573
BstAPI GCANNNNNTGC 2 cut(s) 207, 413
BstC8I GCNNGC 2 cut(s) 85, 389
BstDEI CTNAG 3 cut(s) 8, 72, 551
BstDSI CCRYGG 1 cut(s) 526
BstF5I GGATG 4 cut(s) 139, 220, 277, 564
BstFNI CGCG 1 cut(s) 528
BstHHI GCGC 1 cut(s) 418
BstKTI GATC 1 cut(s) 304
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 5 cut(s) 207, 413, 422, 470, 505
BstNI CCWGG 1 cut(s) 420
BstNSI RCATGY 2 cut(s) 87, 391
BstSCI CCNGG 1 cut(s) 418
BstUI CGCG 1 cut(s) 528
BstV1I GCAGC 2 cut(s) 213, 437
BsuRI GGCC 1 cut(s) 268
BtgI CCRYGG 1 cut(s) 526
BtsCI GGATG 4 cut(s) 139, 220, 277, 564
BtsI GCAGTG 2 cut(s) 474, 501
BtsIMutI CAGTG 2 cut(s) 474, 501
BveI ACCTGC 2 cut(s) 195, 232
Cac8I GCNNGC 2 cut(s) 85, 389
CaiI CAGNNNCTG 1 cut(s) 79
CciI TCATGA 1 cut(s) 226
CfoI GCGC 1 cut(s) 418
Cfr10I RCCGGY 1 cut(s) 268
Cfr42I CCGCGG 1 cut(s) 529
CviAII CATG 5 cut(s) 84, 126, 211, 227, 388
CviJI RGCY 7 cut(s) 12, 76, 161, 268, 289, 370, 428
CviKI_1 RGCY 7 cut(s) 12, 76, 161, 268, 289, 370, 428
DdeI CTNAG 3 cut(s) 8, 72, 551
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
DrdI GACNNNNNNGTC 1 cut(s) 335
DseDI GACNNNNNNGTC 1 cut(s) 335
EaeI YGGCCR 1 cut(s) 266
Eam1104I CTCTTC 2 cut(s) 337, 573
EarI CTCTTC 2 cut(s) 337, 573
Eco32I GATATC 1 cut(s) 543
EcoRII CCWGG 1 cut(s) 418
EcoRV GATATC 1 cut(s) 543
FaeI CATG 5 cut(s) 87, 129, 214, 230, 391
FalI AAGNNNNNCTT 2 cut(s) 150, 182
FatI CATG 5 cut(s) 83, 125, 210, 226, 387
FauI CCCGC 1 cut(s) 533
FauNDI CATATG 2 cut(s) 237, 537
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 4 cut(s) 202, 426, 465, 529
FokI GGATG 4 cut(s) 146, 227, 264, 571
Fsp4HI GCNGC 4 cut(s) 202, 426, 465, 529
GlaI GCGC 1 cut(s) 417
GluI GCNGC 4 cut(s) 202, 426, 465, 529
GsuI CTGGAG 2 cut(s) 441, 596
HaeIII GGCC 1 cut(s) 268
HapII CCGG 1 cut(s) 269
HhaI GCGC 1 cut(s) 418
Hin1II CATG 5 cut(s) 87, 129, 214, 230, 391
Hin6I GCGC 1 cut(s) 416
HinP1I GCGC 1 cut(s) 416
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 4 cut(s) 187, 329, 451, 632
HpaII CCGG 1 cut(s) 269
HphI GGTGA 3 cut(s) 514, 537, 586
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 3 cut(s) 376, 456, 552
Hpy188III TCNNGA 3 cut(s) 227, 284, 636
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 4 cut(s) 146, 352, 549, 582
HpyCH4III ACNGT 2 cut(s) 460, 598
HpyCH4V TGCA 3 cut(s) 87, 210, 241
HpyF10VI GCNNNNNNNGC 5 cut(s) 207, 413, 422, 470, 505
HpyF3I CTNAG 3 cut(s) 8, 72, 551
Hsp92II CATG 5 cut(s) 87, 129, 214, 230, 391
HspAI GCGC 1 cut(s) 416
KspI CCGCGG 1 cut(s) 529
Kzo9I GATC 1 cut(s) 301
LmnI GCTCC 3 cut(s) 166, 422, 615
Lsp1109I GCAGC 2 cut(s) 213, 437
LweI GCATC 4 cut(s) 312, 416, 549, 600
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MboII GAAGA 2 cut(s) 324, 560
MluCI AATT 1 cut(s) 65
MlyI GAGTC 2 cut(s) 323, 626
MseI TTAA 2 cut(s) 342, 446
MslI CAYNNNNRTG 3 cut(s) 98, 113, 225
MspA1I CMGCKG 1 cut(s) 528
MspI CCGG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 420
MvaI CCWGG 1 cut(s) 420
MvnI CGCG 1 cut(s) 528
MwoI GCNNNNNNNGC 5 cut(s) 207, 413, 422, 470, 505
NdeI CATATG 2 cut(s) 237, 537
NdeII GATC 1 cut(s) 301
NlaIII CATG 5 cut(s) 87, 129, 214, 230, 391
NlaIV GGNNCC 1 cut(s) 509
NspI RCATGY 2 cut(s) 87, 391
PaeI GCATGC 2 cut(s) 87, 391
PagI TCATGA 1 cut(s) 226
PaqCI CACCTGC 1 cut(s) 195
PcsI WCGNNNNNNNCGW 2 cut(s) 496, 627
PfeI GAWTC 2 cut(s) 187, 451
PkrI GCNGC 4 cut(s) 203, 427, 466, 530
PleI GAGTC 2 cut(s) 323, 626
PpsI GAGTC 2 cut(s) 323, 626
PshBI ATTAAT 2 cut(s) 342, 446
Psp6I CCWGG 1 cut(s) 418
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 1 cut(s) 509
PstNI CAGNNNCTG 1 cut(s) 79
RseI CAYNNNNRTG 3 cut(s) 98, 113, 225
SacII CCGCGG 1 cut(s) 529
SalI GTCGAC 1 cut(s) 251
SaqAI TTAA 2 cut(s) 342, 446
SatI GCNGC 4 cut(s) 202, 426, 465, 529
Sau3AI GATC 1 cut(s) 301
SchI GAGTC 2 cut(s) 323, 626
ScrFI CCNGG 1 cut(s) 420
SfaNI GCATC 4 cut(s) 312, 416, 549, 600
Sfr303I CCGCGG 1 cut(s) 529
SgrBI CCGCGG 1 cut(s) 529
SmiMI CAYNNNNRTG 3 cut(s) 98, 113, 225
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SphI GCATGC 2 cut(s) 87, 391
Sse9I AATT 1 cut(s) 65
SsiI CCGC 3 cut(s) 464, 526, 528
StyD4I CCNGG 1 cut(s) 418
TaaI ACNGT 2 cut(s) 460, 598
TaqI TCGA 5 cut(s) 252, 258, 490, 621, 630
TasI AATT 1 cut(s) 65
TauI GCSGC 2 cut(s) 467, 531
TfiI GAWTC 2 cut(s) 187, 451
Tru1I TTAA 2 cut(s) 342, 446
Tru9I TTAA 2 cut(s) 342, 446
TscAI CASTG 2 cut(s) 474, 501
TseI GCWGC 2 cut(s) 201, 425
TspDTI ATGAA 5 cut(s) 114, 116, 189, 209, 464
TspGWI ACGGA 1 cut(s) 159
TspRI CASTG 2 cut(s) 474, 501
VspI ATTAAT 2 cut(s) 342, 446
XapI RAATTY 1 cut(s) 65
XceI RCATGY 2 cut(s) 87, 391
XmiI GTMKAC 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.