Rh4AG325400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0013160
Physical Location & Seq
Reverse (-)
63721983 .. 63723616
1634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG325400.1

Sequence Viewer

Length: 558 bp
ATGAACAATAATAATAATATATCTATGGGATTTTCATGTGGAAGTCATTATTATGATGGAGAAGAACCTGAAGTTCCTCTGATAAATGAAACAAAGAGGTGTGCTGCTATGGATGTTCAAGTTCATAATGAGCTTCATGAAGGTGAAGTAGAACTAATCGACTTTGAATTCTGGCCCATTGAACATCCTTCAGAGCCGCCCGATGAGGATCACCCTCTGAAATGCCCAATGCCGGACTCTTCTGTCATCAATATTGATATAGTCTCATGTAAAATAAATTTACAGGATGGAGGAACAGGAAGGGTTTCTGAGAGCAACTATAACAGCTCAATGCCGCGTAAGAGAACAGAAGTTTCTTCTGCTGCTTTTATGGATGAGATGGTAGATCAGCCTCCTGTTCCGGTTCGAGCAGTGCGGAAGAGGCATCACACTCTCACCCGCGGCGGGGGTGACCATATCATATCCCCTCTGAGGAGAATGCCGCCCCATCCGCCTCGCCCTCTACCGGCTCAGAGCATCACCGTCTTTCAAATGCTTCAGCAGCTGGACAAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.82

Weight (kDa)

5.29

Isoelectric Point (pI)

78.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01913
fragaria_vesca FvH4_4g26140 FvH4_4g26140
malus_domestica MD13G1015500.v1.1 MD16G1013000.v1.1
prunus_persica Prupe.1G338300_v2.0.a1 Prupe.1G338300_v2.0.a1
pyrus_communis pycom13g01310 pycom16g01220
rosa_laevigata RLG00000006736
rosa_multiflora Rmu_sc0000312.1_g000026
rosa_roxburghii Rroxscaffold_5G00375150
rosa_rugosa Rorug04G0271100.1
rosa_samantha Rh4AG325400 Rh4BG333200 Rh4CG348400 Rh4DG329800
rosa_wichuraiana Rw4G028180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 242
AccII CGCG 2 cut(s) 337, 441
AciI CCGC 8 cut(s) 197, 335, 415, 439, 441, 444, 482, 491
AclWI GGATC 1 cut(s) 216
AcsI RAATTY 2 cut(s) 167, 277
AcuI CTGAAG 3 cut(s) 90, 174, 521
AfiI CCNNNNNNNGG 5 cut(s) 232, 444, 445, 471, 505
AgsI TTSAA 4 cut(s) 119, 167, 182, 530
AluBI AGCT 3 cut(s) 133, 327, 544
AluI AGCT 3 cut(s) 133, 327, 544
Alw26I GTCTC 1 cut(s) 268
AlwI GGATC 1 cut(s) 216
AlwNI CAGNNNCTG 1 cut(s) 544
AoxI GGCC 1 cut(s) 173
ApeKI GCWGC 3 cut(s) 104, 362, 541
ApoI RAATTY 2 cut(s) 167, 277
Asp700I GAANNNNTTC 1 cut(s) 304
AspS9I GGNCC 1 cut(s) 174
AsuHPI GGTGA 5 cut(s) 155, 203, 427, 461, 511
BbvI GCAGC 3 cut(s) 91, 349, 553
BccI CCATC 4 cut(s) 50, 281, 373, 495
BcoDI GTCTC 1 cut(s) 268
BisI GCNGC 7 cut(s) 105, 197, 335, 363, 442, 482, 542
BlsI GCNGC 7 cut(s) 106, 198, 336, 364, 443, 483, 543
BmgT120I GGNCC 1 cut(s) 174
BmsI GCATC 2 cut(s) 433, 525
BsaBI GATNNNNATC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 439
BsaWI WCCGGW 1 cut(s) 400
Bsc4I CCNNNNNNNGG 5 cut(s) 232, 444, 445, 471, 505
Bse118I RCCGGY 1 cut(s) 505
Bse8I GATNNNNATC 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 439
BseGI GGATG 5 cut(s) 118, 184, 292, 379, 487
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 5 cut(s) 232, 444, 445, 471, 505
BseMII CTCAG 3 cut(s) 300, 461, 524
BseRI GAGGAG 1 cut(s) 487
BseXI GCAGC 3 cut(s) 91, 349, 553
Bsh1236I CGCG 2 cut(s) 337, 441
BshFI GGCC 1 cut(s) 175
BsiSI CCGG 3 cut(s) 233, 401, 506
BslI CCNNNNNNNGG 5 cut(s) 232, 444, 445, 471, 505
BsmAI GTCTC 1 cut(s) 268
BsmI GAATGC 1 cut(s) 483
BsnI GGCC 1 cut(s) 175
Bsp143I GATC 2 cut(s) 208, 385
BspACI CCGC 8 cut(s) 197, 335, 415, 439, 441, 444, 482, 491
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 3 cut(s) 301, 462, 523
BspFNI CGCG 2 cut(s) 337, 441
BspHI TCATGA 1 cut(s) 136
BspPI GGATC 1 cut(s) 216
BsrFI RCCGGY 1 cut(s) 505
BssAI RCCGGY 1 cut(s) 505
BssECI CCNNGG 1 cut(s) 439
BssMI GATC 2 cut(s) 208, 385
Bst4CI ACNGT 1 cut(s) 523
Bst6I CTCTTC 2 cut(s) 244, 413
BstDEI CTNAG 3 cut(s) 309, 470, 510
BstDSI CCRYGG 1 cut(s) 439
BstEII GGTNACC 1 cut(s) 449
BstF5I GGATG 5 cut(s) 118, 184, 292, 379, 487
BstFNI CGCG 2 cut(s) 337, 441
BstKTI GATC 2 cut(s) 211, 388
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 2 cut(s) 208, 385
BstMWI GCNNNNNNNGC 3 cut(s) 421, 490, 541
BstPI GGTNACC 1 cut(s) 449
BstUI CGCG 2 cut(s) 337, 441
BstV1I GCAGC 3 cut(s) 91, 349, 553
BsuRI GGCC 1 cut(s) 175
BtgI CCRYGG 1 cut(s) 439
BtsCI GGATG 5 cut(s) 118, 184, 292, 379, 487
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 1 cut(s) 417
CaiI CAGNNNCTG 1 cut(s) 544
CciI TCATGA 1 cut(s) 136
Cfr10I RCCGGY 1 cut(s) 505
Cfr13I GGNCC 1 cut(s) 174
Cfr42I CCGCGG 1 cut(s) 442
CviAII CATG 3 cut(s) 36, 137, 267
CviJI RGCY 7 cut(s) 133, 175, 196, 327, 391, 509, 544
CviKI_1 RGCY 7 cut(s) 133, 175, 196, 327, 391, 509, 544
DdeI CTNAG 3 cut(s) 309, 470, 510
DpnI GATC 2 cut(s) 210, 387
DpnII GATC 2 cut(s) 208, 385
DrdI GACNNNNNNGTC 1 cut(s) 242
DseDI GACNNNNNNGTC 1 cut(s) 242
Eam1104I CTCTTC 2 cut(s) 244, 413
EarI CTCTTC 2 cut(s) 244, 413
EciI GGCGGA 1 cut(s) 480
Eco57I CTGAAG 3 cut(s) 90, 174, 521
Eco91I GGTNACC 1 cut(s) 449
EcoO65I GGTNACC 1 cut(s) 449
EcoRI GAATTC 1 cut(s) 167
FaeI CATG 3 cut(s) 39, 140, 270
FatI CATG 3 cut(s) 35, 136, 266
FauI CCCGC 2 cut(s) 437, 446
Fnu4HI GCNGC 7 cut(s) 105, 197, 335, 363, 442, 482, 542
FokI GGATG 5 cut(s) 125, 171, 299, 386, 474
Fsp4HI GCNGC 7 cut(s) 105, 197, 335, 363, 442, 482, 542
GluI GCNGC 7 cut(s) 105, 197, 335, 363, 442, 482, 542
HaeIII GGCC 1 cut(s) 175
HapII CCGG 3 cut(s) 233, 401, 506
Hin1II CATG 3 cut(s) 39, 140, 270
HinfI GANTC 1 cut(s) 236
HpaII CCGG 3 cut(s) 233, 401, 506
HphI GGTGA 5 cut(s) 155, 203, 427, 461, 511
Hpy188I TCNGA 6 cut(s) 81, 193, 219, 310, 471, 513
Hpy188III TCNNGA 2 cut(s) 137, 555
HpyAV CCTTC 3 cut(s) 134, 198, 294
HpyCH4III ACNGT 1 cut(s) 523
HpyF10VI GCNNNNNNNGC 3 cut(s) 421, 490, 541
HpyF3I CTNAG 3 cut(s) 309, 470, 510
Hsp92II CATG 3 cut(s) 39, 140, 270
KspI CCGCGG 1 cut(s) 442
Kzo9I GATC 2 cut(s) 208, 385
LpnPI CCDG 9 cut(s) 81, 157, 246, 269, 282, 408, 414, 519, 530
Lsp1109I GCAGC 3 cut(s) 91, 349, 553
LweI GCATC 2 cut(s) 433, 525
MaeIII GTNAC 1 cut(s) 449
MalI GATC 2 cut(s) 210, 387
MboI GATC 2 cut(s) 208, 385
MboII GAAGA 4 cut(s) 74, 231, 348, 430
MluCI AATT 2 cut(s) 167, 277
MlyI GAGTC 1 cut(s) 230
MroXI GAANNNNTTC 1 cut(s) 304
MslI CAYNNNNRTG 2 cut(s) 51, 141
MspA1I CMGCKG 2 cut(s) 441, 544
MspI CCGG 3 cut(s) 233, 401, 506
Mva1269I GAATGC 1 cut(s) 483
MvnI CGCG 2 cut(s) 337, 441
MwoI GCNNNNNNNGC 3 cut(s) 421, 490, 541
NdeII GATC 2 cut(s) 208, 385
NlaIII CATG 3 cut(s) 39, 140, 270
NmuCI GTSAC 1 cut(s) 449
PagI TCATGA 1 cut(s) 136
PctI GAATGC 1 cut(s) 483
PdmI GAANNNNTTC 1 cut(s) 304
PkrI GCNGC 7 cut(s) 106, 198, 336, 364, 443, 483, 543
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
PspEI GGTNACC 1 cut(s) 449
PspPI GGNCC 1 cut(s) 174
PstNI CAGNNNCTG 1 cut(s) 544
PvuII CAGCTG 1 cut(s) 544
RseI CAYNNNNRTG 2 cut(s) 51, 141
SacII CCGCGG 1 cut(s) 442
SatI GCNGC 7 cut(s) 105, 197, 335, 363, 442, 482, 542
Sau3AI GATC 2 cut(s) 208, 385
Sau96I GGNCC 1 cut(s) 174
SchI GAGTC 1 cut(s) 230
SetI ASST 6 cut(s) 70, 101, 135, 145, 329, 546
SfaNI GCATC 2 cut(s) 433, 525
Sfr303I CCGCGG 1 cut(s) 442
SgrBI CCGCGG 1 cut(s) 442
SmiMI CAYNNNNRTG 2 cut(s) 51, 141
Sse9I AATT 2 cut(s) 167, 277
SsiI CCGC 8 cut(s) 197, 335, 415, 439, 441, 444, 482, 491
SspI AATATT 1 cut(s) 253
TaaI ACNGT 1 cut(s) 523
TaqI TCGA 2 cut(s) 159, 406
TasI AATT 2 cut(s) 167, 277
TauI GCSGC 4 cut(s) 199, 337, 444, 484
TscAI CASTG 1 cut(s) 417
TseFI GTSAC 1 cut(s) 449
TseI GCWGC 3 cut(s) 104, 362, 541
Tsp45I GTSAC 1 cut(s) 449
TspDTI ATGAA 6 cut(s) 17, 24, 102, 113, 125, 153
TspRI CASTG 1 cut(s) 417
XapI RAATTY 2 cut(s) 167, 277
XmnI GAANNNNTTC 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.