Rroxscaffold_5G00375150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0013160
Physical Location & Seq
Reverse (-)
56022476 .. 56023432
957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00375150.1

Sequence Viewer

Length: 570 bp
ATGAACAGTAATAATAATATCTCTATGGGATTTTCATGTGGAAGTCATTATTATGATGGAGAAGAACCCGAAGTTCCTCTGATAAATGAAACAAAGAGGTGTGCTGCTATGGATGTTCAAGTTCATAATGAGCTTCATGAAGGTGCAGTAGAACTATTCGACTTTGAATTCTGGCCCATTGAACATCCTTCAGAGCCGCCGGATGAGGATCACCCTCTGAAATGCCCAATGCCGGACTCTTCTGTCATCAATATTGATATAGTCTCATGTAAAATAAATTTACAGGATGGAGGAACAGGAAGGGTTTCTGAGAGCAACTATAACAGCTCAATGCCGCGTAAGAGAACAGAAGTTTCTTCTGCTGCTTTTATGGATGAGATGGTAGATCAGCCTCCTGTTCCGGTTCCTGTTCCGGTTCGAGCAGTGCGGAAGAGGCATCACACTCTCACCCGCGGCGGGGGTGACCATATCATATCCCCTCTGAGGAGAATGCCGCCCCATCCGCCTCGCCCTCTACCGGCTCAGAGCATCACCGTCTTTCAAATGCTTCAGCAGCTGGACAAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

21.16

Weight (kDa)

5.41

Isoelectric Point (pI)

81.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01913
fragaria_vesca FvH4_4g26140 FvH4_4g26140
malus_domestica MD13G1015500.v1.1 MD16G1013000.v1.1
prunus_persica Prupe.1G338300_v2.0.a1 Prupe.1G338300_v2.0.a1
pyrus_communis pycom13g01310 pycom16g01220
rosa_laevigata RLG00000006736
rosa_multiflora Rmu_sc0000312.1_g000026
rosa_roxburghii Rroxscaffold_5G00375150
rosa_rugosa Rorug04G0271100.1
rosa_samantha Rh4AG325400 Rh4BG333200 Rh4CG348400 Rh4DG329800
rosa_wichuraiana Rw4G028180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 242
AccII CGCG 2 cut(s) 337, 453
AciI CCGC 8 cut(s) 197, 335, 427, 451, 453, 456, 494, 503
AclWI GGATC 1 cut(s) 216
AcsI RAATTY 2 cut(s) 167, 277
AcuI CTGAAG 2 cut(s) 174, 533
AfiI CCNNNNNNNGG 5 cut(s) 232, 456, 457, 483, 517
AgsI TTSAA 4 cut(s) 119, 167, 182, 542
AluBI AGCT 3 cut(s) 133, 327, 556
AluI AGCT 3 cut(s) 133, 327, 556
Alw26I GTCTC 1 cut(s) 268
AlwI GGATC 1 cut(s) 216
AlwNI CAGNNNCTG 1 cut(s) 556
AoxI GGCC 1 cut(s) 173
ApeKI GCWGC 3 cut(s) 104, 362, 553
ApoI RAATTY 2 cut(s) 167, 277
Asp700I GAANNNNTTC 1 cut(s) 304
AspS9I GGNCC 1 cut(s) 174
AsuHPI GGTGA 4 cut(s) 203, 439, 473, 523
BbvI GCAGC 3 cut(s) 91, 349, 565
BccI CCATC 4 cut(s) 50, 281, 373, 507
BcoDI GTCTC 1 cut(s) 268
BisI GCNGC 7 cut(s) 105, 197, 335, 363, 454, 494, 554
BlsI GCNGC 7 cut(s) 106, 198, 336, 364, 455, 495, 555
BmgT120I GGNCC 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 405
BmsI GCATC 2 cut(s) 445, 537
BsaBI GATNNNNATC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 451
BsaWI WCCGGW 2 cut(s) 400, 412
Bsc4I CCNNNNNNNGG 5 cut(s) 232, 456, 457, 483, 517
Bse118I RCCGGY 1 cut(s) 517
Bse8I GATNNNNATC 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 451
BseGI GGATG 6 cut(s) 118, 184, 208, 292, 379, 499
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 5 cut(s) 232, 456, 457, 483, 517
BseMII CTCAG 3 cut(s) 300, 473, 536
BseRI GAGGAG 1 cut(s) 499
BseXI GCAGC 3 cut(s) 91, 349, 565
BsgI GTGCAG 1 cut(s) 165
Bsh1236I CGCG 2 cut(s) 337, 453
BshFI GGCC 1 cut(s) 175
BsiSI CCGG 5 cut(s) 200, 233, 401, 413, 518
BslI CCNNNNNNNGG 5 cut(s) 232, 456, 457, 483, 517
BsmAI GTCTC 1 cut(s) 268
BsmI GAATGC 1 cut(s) 495
BsnI GGCC 1 cut(s) 175
Bsp143I GATC 2 cut(s) 208, 385
BspACI CCGC 8 cut(s) 197, 335, 427, 451, 453, 456, 494, 503
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 3 cut(s) 301, 474, 535
BspFNI CGCG 2 cut(s) 337, 453
BspHI TCATGA 1 cut(s) 136
BspLI GGNNCC 1 cut(s) 405
BspPI GGATC 1 cut(s) 216
BsrFI RCCGGY 1 cut(s) 517
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 1 cut(s) 451
BssMI GATC 2 cut(s) 208, 385
Bst4CI ACNGT 2 cut(s) 8, 535
Bst6I CTCTTC 2 cut(s) 244, 425
BstDEI CTNAG 3 cut(s) 309, 482, 522
BstDSI CCRYGG 1 cut(s) 451
BstEII GGTNACC 1 cut(s) 461
BstF5I GGATG 6 cut(s) 118, 184, 208, 292, 379, 499
BstFNI CGCG 2 cut(s) 337, 453
BstKTI GATC 2 cut(s) 211, 388
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 2 cut(s) 208, 385
BstMWI GCNNNNNNNGC 3 cut(s) 433, 502, 553
BstPI GGTNACC 1 cut(s) 461
BstUI CGCG 2 cut(s) 337, 453
BstV1I GCAGC 3 cut(s) 91, 349, 565
BsuRI GGCC 1 cut(s) 175
BtgI CCRYGG 1 cut(s) 451
BtsCI GGATG 6 cut(s) 118, 184, 208, 292, 379, 499
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 1 cut(s) 429
CaiI CAGNNNCTG 1 cut(s) 556
CciI TCATGA 1 cut(s) 136
Cfr10I RCCGGY 1 cut(s) 517
Cfr13I GGNCC 1 cut(s) 174
Cfr42I CCGCGG 1 cut(s) 454
CviAII CATG 3 cut(s) 36, 137, 267
CviJI RGCY 7 cut(s) 133, 175, 196, 327, 391, 521, 556
CviKI_1 RGCY 7 cut(s) 133, 175, 196, 327, 391, 521, 556
DdeI CTNAG 3 cut(s) 309, 482, 522
DpnI GATC 2 cut(s) 210, 387
DpnII GATC 2 cut(s) 208, 385
DrdI GACNNNNNNGTC 1 cut(s) 242
DseDI GACNNNNNNGTC 1 cut(s) 242
Eam1104I CTCTTC 2 cut(s) 244, 425
EarI CTCTTC 2 cut(s) 244, 425
EciI GGCGGA 1 cut(s) 492
Eco57I CTGAAG 2 cut(s) 174, 533
Eco91I GGTNACC 1 cut(s) 461
EcoO65I GGTNACC 1 cut(s) 461
EcoRI GAATTC 1 cut(s) 167
FaeI CATG 3 cut(s) 39, 140, 270
FatI CATG 3 cut(s) 35, 136, 266
FauI CCCGC 2 cut(s) 449, 458
Fnu4HI GCNGC 7 cut(s) 105, 197, 335, 363, 454, 494, 554
FokI GGATG 6 cut(s) 125, 171, 215, 299, 386, 486
Fsp4HI GCNGC 7 cut(s) 105, 197, 335, 363, 454, 494, 554
GluI GCNGC 7 cut(s) 105, 197, 335, 363, 454, 494, 554
HaeIII GGCC 1 cut(s) 175
HapII CCGG 5 cut(s) 200, 233, 401, 413, 518
Hin1II CATG 3 cut(s) 39, 140, 270
HinfI GANTC 1 cut(s) 236
HpaII CCGG 5 cut(s) 200, 233, 401, 413, 518
HphI GGTGA 4 cut(s) 203, 439, 473, 523
Hpy188I TCNGA 6 cut(s) 81, 193, 219, 310, 483, 525
Hpy188III TCNNGA 2 cut(s) 137, 567
HpyAV CCTTC 3 cut(s) 134, 198, 294
HpyCH4III ACNGT 2 cut(s) 8, 535
HpyCH4V TGCA 1 cut(s) 146
HpyF10VI GCNNNNNNNGC 3 cut(s) 433, 502, 553
HpyF3I CTNAG 3 cut(s) 309, 482, 522
Hsp92II CATG 3 cut(s) 39, 140, 270
KspI CCGCGG 1 cut(s) 454
Kzo9I GATC 2 cut(s) 208, 385
Lsp1109I GCAGC 3 cut(s) 91, 349, 565
LweI GCATC 2 cut(s) 445, 537
MaeIII GTNAC 1 cut(s) 461
MalI GATC 2 cut(s) 210, 387
MboI GATC 2 cut(s) 208, 385
MboII GAAGA 4 cut(s) 74, 231, 348, 442
MluCI AATT 2 cut(s) 167, 277
MlyI GAGTC 1 cut(s) 230
MroXI GAANNNNTTC 1 cut(s) 304
MslI CAYNNNNRTG 2 cut(s) 51, 141
MspA1I CMGCKG 2 cut(s) 453, 556
MspI CCGG 5 cut(s) 200, 233, 401, 413, 518
Mva1269I GAATGC 1 cut(s) 495
MvnI CGCG 2 cut(s) 337, 453
MwoI GCNNNNNNNGC 3 cut(s) 433, 502, 553
NdeII GATC 2 cut(s) 208, 385
NlaIII CATG 3 cut(s) 39, 140, 270
NlaIV GGNNCC 1 cut(s) 405
NmuCI GTSAC 1 cut(s) 461
PagI TCATGA 1 cut(s) 136
PctI GAATGC 1 cut(s) 495
PdmI GAANNNNTTC 1 cut(s) 304
PkrI GCNGC 7 cut(s) 106, 198, 336, 364, 455, 495, 555
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
PspEI GGTNACC 1 cut(s) 461
PspN4I GGNNCC 1 cut(s) 405
PspPI GGNCC 1 cut(s) 174
PstNI CAGNNNCTG 1 cut(s) 556
PvuII CAGCTG 1 cut(s) 556
RseI CAYNNNNRTG 2 cut(s) 51, 141
SacII CCGCGG 1 cut(s) 454
SatI GCNGC 7 cut(s) 105, 197, 335, 363, 454, 494, 554
Sau3AI GATC 2 cut(s) 208, 385
Sau96I GGNCC 1 cut(s) 174
SchI GAGTC 1 cut(s) 230
SetI ASST 5 cut(s) 101, 135, 145, 329, 558
SfaNI GCATC 2 cut(s) 445, 537
Sfr303I CCGCGG 1 cut(s) 454
SgrBI CCGCGG 1 cut(s) 454
SmiMI CAYNNNNRTG 2 cut(s) 51, 141
Sse9I AATT 2 cut(s) 167, 277
SsiI CCGC 8 cut(s) 197, 335, 427, 451, 453, 456, 494, 503
SspI AATATT 1 cut(s) 253
TaaI ACNGT 2 cut(s) 8, 535
TaqI TCGA 2 cut(s) 159, 418
TasI AATT 2 cut(s) 167, 277
TauI GCSGC 4 cut(s) 199, 337, 456, 496
TscAI CASTG 1 cut(s) 429
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 3 cut(s) 104, 362, 553
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 6 cut(s) 17, 24, 102, 113, 125, 153
TspRI CASTG 1 cut(s) 429
XapI RAATTY 2 cut(s) 167, 277
XmnI GAANNNNTTC 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.