Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0013160

Physical Location & Seq

Genomic Coordinates Forward (+)

10056208 .. 10056977

Gene Structure 770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006736

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAACAGCAATAATAATAATAATAATATCTCTATGGGATTTTCATGTGGAAGTCATTATTATGATGGAGAAGAACCTGAAGTTCCTCTGATAAATGAAACAAAGAGGTGTGCTGCTATGGATGTTCAAGTTCATAATGAGCTTCATGAAGGTCAAGTAGAACTATTCGACTTTGAATTCTGGCCCATTGAACATCCTTCAGAGCCGCCCGATGAGGATCACCCTCTGAAATGCCCAATGCCGGACTCTTCTGTCATCAATGATGGAGGAACAGGAAGGGTTTCTGAGAGCAACTATAACAGCTCAATGCCGCGTAAGAGAACAGAAGTTTCTTCTGCTGCTTTTATGGATGAGATGGTAGATCAGCCTCCTGTTCCAGTTCCTGTTCCAGTTCGAGCAGTGCGGAAGAGGCATCACACTCTCACCCGCGGCGGGGGTGACCATATCATATCCCCTCTGAGGAGAATGCCGCCCCATCCGCCTCGCCCTCTACCGGCTCAGAGCATCACCGTCTTTCAAATGCTTCAGCAGCTGGACAAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

20.33

Weight (kDa)

5.4

Isoelectric Point (pI)

78.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01913
fragaria_vesca	FvH4_4g26140 FvH4_4g26140
malus_domestica	MD13G1015500.v1.1 MD16G1013000.v1.1
prunus_persica	Prupe.1G338300_v2.0.a1 Prupe.1G338300_v2.0.a1
pyrus_communis	pycom13g01310 pycom16g01220
rosa_laevigata	RLG00000006736
rosa_multiflora	Rmu_sc0000312.1_g000026
rosa_roxburghii	Rroxscaffold_5G00375150
rosa_rugosa	Rorug04G0271100.1
rosa_samantha	Rh4AG325400 Rh4BG333200 Rh4CG348400 Rh4DG329800
rosa_wichuraiana	Rw4G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	251
AccII	CGCG	2 cut(s)	313, 429
AciI	CCGC	8 cut(s)	206, 311, 403, 427, 429, 432, 470, 479
AclWI	GGATC	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	176
AcuI	CTGAAG	3 cut(s)	99, 183, 509
AfiI	CCNNNNNNNGG	5 cut(s)	241, 432, 433, 459, 493
AgsI	TTSAA	4 cut(s)	128, 176, 191, 518
AluBI	AGCT	3 cut(s)	142, 303, 532
AluI	AGCT	3 cut(s)	142, 303, 532
AlwI	GGATC	1 cut(s)	225
AlwNI	CAGNNNCTG	2 cut(s)	383, 532
AoxI	GGCC	1 cut(s)	182
ApeKI	GCWGC	3 cut(s)	113, 338, 529
ApoI	RAATTY	1 cut(s)	176
Asp700I	GAANNNNTTC	1 cut(s)	280
AspS9I	GGNCC	1 cut(s)	183
AsuHPI	GGTGA	4 cut(s)	212, 415, 449, 499
BbvI	GCAGC	3 cut(s)	100, 325, 541
BccI	CCATC	4 cut(s)	59, 257, 349, 483
BisI	GCNGC	7 cut(s)	114, 206, 311, 339, 430, 470, 530
BlsI	GCNGC	7 cut(s)	115, 207, 312, 340, 431, 471, 531
BmgT120I	GGNCC	1 cut(s)	183
BmsI	GCATC	2 cut(s)	421, 513
BsaBI	GATNNNNATC	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	427
Bsc4I	CCNNNNNNNGG	5 cut(s)	241, 432, 433, 459, 493
Bse118I	RCCGGY	1 cut(s)	493
Bse1I	ACTGG	2 cut(s)	377, 389
Bse8I	GATNNNNATC	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	427
BseGI	GGATG	4 cut(s)	127, 193, 355, 475
BseJI	GATNNNNATC	1 cut(s)	216
BseLI	CCNNNNNNNGG	5 cut(s)	241, 432, 433, 459, 493
BseMII	CTCAG	3 cut(s)	276, 449, 512
BseNI	ACTGG	2 cut(s)	377, 389
BseRI	GAGGAG	1 cut(s)	475
BseXI	GCAGC	3 cut(s)	100, 325, 541
Bsh1236I	CGCG	2 cut(s)	313, 429
BshFI	GGCC	1 cut(s)	184
BsiSI	CCGG	2 cut(s)	242, 494
BslI	CCNNNNNNNGG	5 cut(s)	241, 432, 433, 459, 493
BsmI	GAATGC	1 cut(s)	471
BsnI	GGCC	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	217, 361
BspACI	CCGC	8 cut(s)	206, 311, 403, 427, 429, 432, 470, 479
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	3 cut(s)	277, 450, 511
BspFNI	CGCG	2 cut(s)	313, 429
BspHI	TCATGA	1 cut(s)	145
BspPI	GGATC	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	493
BsrI	ACTGG	2 cut(s)	377, 389
BssAI	RCCGGY	1 cut(s)	493
BssECI	CCNNGG	1 cut(s)	427
BssMI	GATC	2 cut(s)	217, 361
Bst4CI	ACNGT	1 cut(s)	511
Bst6I	CTCTTC	2 cut(s)	253, 401
BstDEI	CTNAG	3 cut(s)	285, 458, 498
BstDSI	CCRYGG	1 cut(s)	427
BstEII	GGTNACC	1 cut(s)	437
BstF5I	GGATG	4 cut(s)	127, 193, 355, 475
BstFNI	CGCG	2 cut(s)	313, 429
BstKTI	GATC	2 cut(s)	220, 364
BstMBI	GATC	2 cut(s)	217, 361
BstMWI	GCNNNNNNNGC	3 cut(s)	409, 478, 529
BstPI	GGTNACC	1 cut(s)	437
BstUI	CGCG	2 cut(s)	313, 429
BstV1I	GCAGC	3 cut(s)	100, 325, 541
BsuRI	GGCC	1 cut(s)	184
BtgI	CCRYGG	1 cut(s)	427
BtsCI	GGATG	4 cut(s)	127, 193, 355, 475
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	1 cut(s)	405
CaiI	CAGNNNCTG	2 cut(s)	383, 532
CciI	TCATGA	1 cut(s)	145
Cfr10I	RCCGGY	1 cut(s)	493
Cfr13I	GGNCC	1 cut(s)	183
Cfr42I	CCGCGG	1 cut(s)	430
CviAII	CATG	2 cut(s)	45, 146
CviJI	RGCY	7 cut(s)	142, 184, 205, 303, 367, 497, 532
CviKI_1	RGCY	7 cut(s)	142, 184, 205, 303, 367, 497, 532
DdeI	CTNAG	3 cut(s)	285, 458, 498
DpnI	GATC	2 cut(s)	219, 363
DpnII	GATC	2 cut(s)	217, 361
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
Eam1104I	CTCTTC	2 cut(s)	253, 401
EarI	CTCTTC	2 cut(s)	253, 401
EciI	GGCGGA	1 cut(s)	468
Eco57I	CTGAAG	3 cut(s)	99, 183, 509
Eco91I	GGTNACC	1 cut(s)	437
EcoO65I	GGTNACC	1 cut(s)	437
EcoRI	GAATTC	1 cut(s)	176
FaeI	CATG	2 cut(s)	48, 149
FatI	CATG	2 cut(s)	44, 145
FauI	CCCGC	2 cut(s)	425, 434
Fnu4HI	GCNGC	7 cut(s)	114, 206, 311, 339, 430, 470, 530
FokI	GGATG	4 cut(s)	134, 180, 362, 462
Fsp4HI	GCNGC	7 cut(s)	114, 206, 311, 339, 430, 470, 530
GluI	GCNGC	7 cut(s)	114, 206, 311, 339, 430, 470, 530
HaeIII	GGCC	1 cut(s)	184
HapII	CCGG	2 cut(s)	242, 494
Hin1II	CATG	2 cut(s)	48, 149
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	2 cut(s)	242, 494
HphI	GGTGA	4 cut(s)	212, 415, 449, 499
Hpy188I	TCNGA	6 cut(s)	90, 202, 228, 286, 459, 501
Hpy188III	TCNNGA	2 cut(s)	146, 543
HpyAV	CCTTC	3 cut(s)	143, 207, 270
HpyCH4III	ACNGT	1 cut(s)	511
HpyF10VI	GCNNNNNNNGC	3 cut(s)	409, 478, 529
HpyF3I	CTNAG	3 cut(s)	285, 458, 498
Hsp92II	CATG	2 cut(s)	48, 149
KspI	CCGCGG	1 cut(s)	430
Kzo9I	GATC	2 cut(s)	217, 361
Lsp1109I	GCAGC	3 cut(s)	100, 325, 541
LweI	GCATC	2 cut(s)	421, 513
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	2 cut(s)	219, 363
MboI	GATC	2 cut(s)	217, 361
MboII	GAAGA	4 cut(s)	83, 240, 324, 418
MluCI	AATT	1 cut(s)	176
MlyI	GAGTC	1 cut(s)	239
MroXI	GAANNNNTTC	1 cut(s)	280
MslI	CAYNNNNRTG	1 cut(s)	60
MspA1I	CMGCKG	2 cut(s)	429, 532
MspI	CCGG	2 cut(s)	242, 494
Mva1269I	GAATGC	1 cut(s)	471
MvnI	CGCG	2 cut(s)	313, 429
MwoI	GCNNNNNNNGC	3 cut(s)	409, 478, 529
NdeII	GATC	2 cut(s)	217, 361
NlaIII	CATG	2 cut(s)	48, 149
NmuCI	GTSAC	1 cut(s)	437
PagI	TCATGA	1 cut(s)	145
PctI	GAATGC	1 cut(s)	471
PdmI	GAANNNNTTC	1 cut(s)	280
PkrI	GCNGC	7 cut(s)	115, 207, 312, 340, 431, 471, 531
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
PspEI	GGTNACC	1 cut(s)	437
PspPI	GGNCC	1 cut(s)	183
PstNI	CAGNNNCTG	2 cut(s)	383, 532
PvuII	CAGCTG	1 cut(s)	532
RseI	CAYNNNNRTG	1 cut(s)	60
SacII	CCGCGG	1 cut(s)	430
SatI	GCNGC	7 cut(s)	114, 206, 311, 339, 430, 470, 530
Sau3AI	GATC	2 cut(s)	217, 361
Sau96I	GGNCC	1 cut(s)	183
SchI	GAGTC	1 cut(s)	239
SetI	ASST	6 cut(s)	79, 110, 144, 154, 305, 534
SfaNI	GCATC	2 cut(s)	421, 513
Sfr303I	CCGCGG	1 cut(s)	430
SgrBI	CCGCGG	1 cut(s)	430
SmiMI	CAYNNNNRTG	1 cut(s)	60
Sse9I	AATT	1 cut(s)	176
SsiI	CCGC	8 cut(s)	206, 311, 403, 427, 429, 432, 470, 479
TaaI	ACNGT	1 cut(s)	511
TaqI	TCGA	2 cut(s)	168, 394
TasI	AATT	1 cut(s)	176
TauI	GCSGC	4 cut(s)	208, 313, 432, 472
TscAI	CASTG	1 cut(s)	405
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	3 cut(s)	113, 338, 529
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	6 cut(s)	17, 33, 111, 122, 134, 162
TspRI	CASTG	1 cut(s)	405
XapI	RAATTY	1 cut(s)	176
XmnI	GAANNNNTTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.