Rh4DG329800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0013160
Physical Location & Seq
Reverse (-)
55306269 .. 55307023
755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG329800.1

Sequence Viewer

Length: 525 bp
ATGAACAATAATAATAATATATCTATGGGATTTTCATGTGGAAGTCATTATTATGATGGAGAAGAACCTGAAGTTCCTCTGATAAATGAAACAAAGAGGTGTGCTGCTATGGATGTTCAAGTTCATAATGAGCTTCATGAAGGTGAAGTAGAACTAATCGACTTTGAATTCTGGCCCATTGAACATCCTTCAGAGCCGCCCGATGAGGATCACCCTCTGAAATGCCCAATGCCGGACTCTTCTGTCATCAATGATGGAGGAACAGGAAGGGTTTCTGAGAGCAACTATAACAGCTCAATGCCGCGTAAGAGAACAGAAGTTTCTTCTGCTGCTTTTATGGATGAGATGGTAGATCAGCCTCCTGTTCCGGTTCGAGCAGTGCGGAAGAGGCATCACACTCTCACCCGCGGCGGGGGTGACCATATCATATCCCCTCTGAGGAGAATGCCGCCCCATCCGCCTCGCCCTCTACCGGCTCAGAGCATCACCGTCTTTCAAATGCTTCAGCAGCTGGACAAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.59

Weight (kDa)

5.29

Isoelectric Point (pI)

76.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01913
fragaria_vesca FvH4_4g26140 FvH4_4g26140
malus_domestica MD13G1015500.v1.1 MD16G1013000.v1.1
prunus_persica Prupe.1G338300_v2.0.a1 Prupe.1G338300_v2.0.a1
pyrus_communis pycom13g01310 pycom16g01220
rosa_laevigata RLG00000006736
rosa_multiflora Rmu_sc0000312.1_g000026
rosa_roxburghii Rroxscaffold_5G00375150
rosa_rugosa Rorug04G0271100.1
rosa_samantha Rh4AG325400 Rh4BG333200 Rh4CG348400 Rh4DG329800
rosa_wichuraiana Rw4G028180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 242
AccII CGCG 2 cut(s) 304, 408
AciI CCGC 8 cut(s) 197, 302, 382, 406, 408, 411, 449, 458
AclWI GGATC 1 cut(s) 216
AcsI RAATTY 1 cut(s) 167
AcuI CTGAAG 3 cut(s) 90, 174, 488
AfiI CCNNNNNNNGG 5 cut(s) 232, 411, 412, 438, 472
AgsI TTSAA 4 cut(s) 119, 167, 182, 497
AluBI AGCT 3 cut(s) 133, 294, 511
AluI AGCT 3 cut(s) 133, 294, 511
AlwI GGATC 1 cut(s) 216
AlwNI CAGNNNCTG 1 cut(s) 511
AoxI GGCC 1 cut(s) 173
ApeKI GCWGC 3 cut(s) 104, 329, 508
ApoI RAATTY 1 cut(s) 167
Asp700I GAANNNNTTC 1 cut(s) 271
AspS9I GGNCC 1 cut(s) 174
AsuHPI GGTGA 5 cut(s) 155, 203, 394, 428, 478
BbvI GCAGC 3 cut(s) 91, 316, 520
BccI CCATC 4 cut(s) 50, 248, 340, 462
BisI GCNGC 7 cut(s) 105, 197, 302, 330, 409, 449, 509
BlsI GCNGC 7 cut(s) 106, 198, 303, 331, 410, 450, 510
BmgT120I GGNCC 1 cut(s) 174
BmsI GCATC 2 cut(s) 400, 492
BsaBI GATNNNNATC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 406
BsaWI WCCGGW 1 cut(s) 367
Bsc4I CCNNNNNNNGG 5 cut(s) 232, 411, 412, 438, 472
Bse118I RCCGGY 1 cut(s) 472
Bse8I GATNNNNATC 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 406
BseGI GGATG 4 cut(s) 118, 184, 346, 454
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 5 cut(s) 232, 411, 412, 438, 472
BseMII CTCAG 3 cut(s) 267, 428, 491
BseRI GAGGAG 1 cut(s) 454
BseXI GCAGC 3 cut(s) 91, 316, 520
Bsh1236I CGCG 2 cut(s) 304, 408
BshFI GGCC 1 cut(s) 175
BsiSI CCGG 3 cut(s) 233, 368, 473
BslI CCNNNNNNNGG 5 cut(s) 232, 411, 412, 438, 472
BsmI GAATGC 1 cut(s) 450
BsnI GGCC 1 cut(s) 175
Bsp143I GATC 2 cut(s) 208, 352
BspACI CCGC 8 cut(s) 197, 302, 382, 406, 408, 411, 449, 458
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 3 cut(s) 268, 429, 490
BspFNI CGCG 2 cut(s) 304, 408
BspHI TCATGA 1 cut(s) 136
BspPI GGATC 1 cut(s) 216
BsrFI RCCGGY 1 cut(s) 472
BssAI RCCGGY 1 cut(s) 472
BssECI CCNNGG 1 cut(s) 406
BssMI GATC 2 cut(s) 208, 352
Bst4CI ACNGT 1 cut(s) 490
Bst6I CTCTTC 2 cut(s) 244, 380
BstDEI CTNAG 3 cut(s) 276, 437, 477
BstDSI CCRYGG 1 cut(s) 406
BstEII GGTNACC 1 cut(s) 416
BstF5I GGATG 4 cut(s) 118, 184, 346, 454
BstFNI CGCG 2 cut(s) 304, 408
BstKTI GATC 2 cut(s) 211, 355
BstMBI GATC 2 cut(s) 208, 352
BstMWI GCNNNNNNNGC 3 cut(s) 388, 457, 508
BstPI GGTNACC 1 cut(s) 416
BstUI CGCG 2 cut(s) 304, 408
BstV1I GCAGC 3 cut(s) 91, 316, 520
BsuRI GGCC 1 cut(s) 175
BtgI CCRYGG 1 cut(s) 406
BtsCI GGATG 4 cut(s) 118, 184, 346, 454
BtsI GCAGTG 1 cut(s) 384
BtsIMutI CAGTG 1 cut(s) 384
CaiI CAGNNNCTG 1 cut(s) 511
CciI TCATGA 1 cut(s) 136
Cfr10I RCCGGY 1 cut(s) 472
Cfr13I GGNCC 1 cut(s) 174
Cfr42I CCGCGG 1 cut(s) 409
CviAII CATG 2 cut(s) 36, 137
CviJI RGCY 7 cut(s) 133, 175, 196, 294, 358, 476, 511
CviKI_1 RGCY 7 cut(s) 133, 175, 196, 294, 358, 476, 511
DdeI CTNAG 3 cut(s) 276, 437, 477
DpnI GATC 2 cut(s) 210, 354
DpnII GATC 2 cut(s) 208, 352
DrdI GACNNNNNNGTC 1 cut(s) 242
DseDI GACNNNNNNGTC 1 cut(s) 242
Eam1104I CTCTTC 2 cut(s) 244, 380
EarI CTCTTC 2 cut(s) 244, 380
EciI GGCGGA 1 cut(s) 447
Eco57I CTGAAG 3 cut(s) 90, 174, 488
Eco91I GGTNACC 1 cut(s) 416
EcoO65I GGTNACC 1 cut(s) 416
EcoRI GAATTC 1 cut(s) 167
FaeI CATG 2 cut(s) 39, 140
FatI CATG 2 cut(s) 35, 136
FauI CCCGC 2 cut(s) 404, 413
Fnu4HI GCNGC 7 cut(s) 105, 197, 302, 330, 409, 449, 509
FokI GGATG 4 cut(s) 125, 171, 353, 441
Fsp4HI GCNGC 7 cut(s) 105, 197, 302, 330, 409, 449, 509
GluI GCNGC 7 cut(s) 105, 197, 302, 330, 409, 449, 509
HaeIII GGCC 1 cut(s) 175
HapII CCGG 3 cut(s) 233, 368, 473
Hin1II CATG 2 cut(s) 39, 140
HinfI GANTC 1 cut(s) 236
HpaII CCGG 3 cut(s) 233, 368, 473
HphI GGTGA 5 cut(s) 155, 203, 394, 428, 478
Hpy188I TCNGA 6 cut(s) 81, 193, 219, 277, 438, 480
Hpy188III TCNNGA 2 cut(s) 137, 522
HpyAV CCTTC 3 cut(s) 134, 198, 261
HpyCH4III ACNGT 1 cut(s) 490
HpyF10VI GCNNNNNNNGC 3 cut(s) 388, 457, 508
HpyF3I CTNAG 3 cut(s) 276, 437, 477
Hsp92II CATG 2 cut(s) 39, 140
KspI CCGCGG 1 cut(s) 409
Kzo9I GATC 2 cut(s) 208, 352
LpnPI CCDG 8 cut(s) 81, 157, 246, 249, 375, 381, 486, 497
Lsp1109I GCAGC 3 cut(s) 91, 316, 520
LweI GCATC 2 cut(s) 400, 492
MaeIII GTNAC 1 cut(s) 416
MalI GATC 2 cut(s) 210, 354
MboI GATC 2 cut(s) 208, 352
MboII GAAGA 4 cut(s) 74, 231, 315, 397
MluCI AATT 1 cut(s) 167
MlyI GAGTC 1 cut(s) 230
MroXI GAANNNNTTC 1 cut(s) 271
MslI CAYNNNNRTG 2 cut(s) 51, 141
MspA1I CMGCKG 2 cut(s) 408, 511
MspI CCGG 3 cut(s) 233, 368, 473
Mva1269I GAATGC 1 cut(s) 450
MvnI CGCG 2 cut(s) 304, 408
MwoI GCNNNNNNNGC 3 cut(s) 388, 457, 508
NdeII GATC 2 cut(s) 208, 352
NlaIII CATG 2 cut(s) 39, 140
NmuCI GTSAC 1 cut(s) 416
PagI TCATGA 1 cut(s) 136
PctI GAATGC 1 cut(s) 450
PdmI GAANNNNTTC 1 cut(s) 271
PkrI GCNGC 7 cut(s) 106, 198, 303, 331, 410, 450, 510
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
PspEI GGTNACC 1 cut(s) 416
PspPI GGNCC 1 cut(s) 174
PstNI CAGNNNCTG 1 cut(s) 511
PvuII CAGCTG 1 cut(s) 511
RseI CAYNNNNRTG 2 cut(s) 51, 141
SacII CCGCGG 1 cut(s) 409
SatI GCNGC 7 cut(s) 105, 197, 302, 330, 409, 449, 509
Sau3AI GATC 2 cut(s) 208, 352
Sau96I GGNCC 1 cut(s) 174
SchI GAGTC 1 cut(s) 230
SetI ASST 6 cut(s) 70, 101, 135, 145, 296, 513
SfaNI GCATC 2 cut(s) 400, 492
Sfr303I CCGCGG 1 cut(s) 409
SgrBI CCGCGG 1 cut(s) 409
SmiMI CAYNNNNRTG 2 cut(s) 51, 141
Sse9I AATT 1 cut(s) 167
SsiI CCGC 8 cut(s) 197, 302, 382, 406, 408, 411, 449, 458
TaaI ACNGT 1 cut(s) 490
TaqI TCGA 2 cut(s) 159, 373
TasI AATT 1 cut(s) 167
TauI GCSGC 4 cut(s) 199, 304, 411, 451
TscAI CASTG 1 cut(s) 384
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 3 cut(s) 104, 329, 508
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 6 cut(s) 17, 24, 102, 113, 125, 153
TspRI CASTG 1 cut(s) 384
XapI RAATTY 1 cut(s) 167
XmnI GAANNNNTTC 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.