Rmu_sc0000312.1_g000026

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000312.1
OG0013160
Physical Location & Seq
Reverse (-)
140118 .. 140667
550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000312.1_g000026.1.cds

Sequence Viewer

Length: 429 bp
atggatgttcaagttcataatgagcttcatgaaggtgaagtagaactattcgactttgaattctggcccattgaacatccttcagagccgcccgatgaggatcaccctctgaaatgcccaatgccggactcttctgtcatcaatgatggaggaacaggaagggtttctgagagcaactatagcagctcaatgccgcgtaagagaacagaagtttcttctgctgcttttatggatgaggtggtagatcagcctcctgttccggttcctgttccggttcgagcagtgcggaagaggcatcacactctcacccgcggcgggggtgaccaaatcatatcccctctgaggagaatgccgccccatccgcctcgccctctaccggctcagagcatcaccgtctttcaaatgcttcagcagctggacaagtcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.96

Weight (kDa)

5.41

Isoelectric Point (pI)

76.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01913
fragaria_vesca FvH4_4g26140 FvH4_4g26140
malus_domestica MD13G1015500.v1.1 MD16G1013000.v1.1
prunus_persica Prupe.1G338300_v2.0.a1 Prupe.1G338300_v2.0.a1
pyrus_communis pycom13g01310 pycom16g01220
rosa_laevigata RLG00000006736
rosa_multiflora Rmu_sc0000312.1_g000026
rosa_roxburghii Rroxscaffold_5G00375150
rosa_rugosa Rorug04G0271100.1
rosa_samantha Rh4AG325400 Rh4BG333200 Rh4CG348400 Rh4DG329800
rosa_wichuraiana Rw4G028180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 134
AccII CGCG 2 cut(s) 196, 312
AciI CCGC 8 cut(s) 89, 194, 286, 310, 312, 315, 353, 362
AclWI GGATC 1 cut(s) 108
AcsI RAATTY 1 cut(s) 59
AcuI CTGAAG 2 cut(s) 66, 392
AfiI CCNNNNNNNGG 5 cut(s) 124, 315, 316, 342, 376
AgsI TTSAA 4 cut(s) 11, 59, 74, 401
AluBI AGCT 3 cut(s) 25, 186, 415
AluI AGCT 3 cut(s) 25, 186, 415
AlwI GGATC 1 cut(s) 108
AlwNI CAGNNNCTG 1 cut(s) 415
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 3 cut(s) 183, 221, 412
ApoI RAATTY 1 cut(s) 59
Asp700I GAANNNNTTC 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 66
AsuHPI GGTGA 5 cut(s) 47, 95, 298, 332, 382
BbvI GCAGC 3 cut(s) 195, 208, 424
BccI CCATC 2 cut(s) 140, 366
BfmI CTRYAG 1 cut(s) 178
BisI GCNGC 7 cut(s) 89, 184, 194, 222, 313, 353, 413
BlsI GCNGC 7 cut(s) 90, 185, 195, 223, 314, 354, 414
BmgT120I GGNCC 1 cut(s) 66
BmiI GGNNCC 1 cut(s) 264
BmsI GCATC 2 cut(s) 304, 396
BsaBI GATNNNNATC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 310
BsaWI WCCGGW 2 cut(s) 259, 271
Bsc4I CCNNNNNNNGG 5 cut(s) 124, 315, 316, 342, 376
Bse118I RCCGGY 1 cut(s) 376
Bse8I GATNNNNATC 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 4 cut(s) 10, 76, 238, 358
BseJI GATNNNNATC 1 cut(s) 99
BseLI CCNNNNNNNGG 5 cut(s) 124, 315, 316, 342, 376
BseMII CTCAG 3 cut(s) 159, 332, 395
BseRI GAGGAG 1 cut(s) 358
BseXI GCAGC 3 cut(s) 195, 208, 424
Bsh1236I CGCG 2 cut(s) 196, 312
BshFI GGCC 1 cut(s) 67
BsiSI CCGG 4 cut(s) 125, 260, 272, 377
BslI CCNNNNNNNGG 5 cut(s) 124, 315, 316, 342, 376
BsmI GAATGC 1 cut(s) 354
BsnI GGCC 1 cut(s) 67
Bsp143I GATC 2 cut(s) 100, 244
BspACI CCGC 8 cut(s) 89, 194, 286, 310, 312, 315, 353, 362
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 3 cut(s) 160, 333, 394
BspFNI CGCG 2 cut(s) 196, 312
BspHI TCATGA 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 264
BspPI GGATC 1 cut(s) 108
BsrFI RCCGGY 1 cut(s) 376
BssAI RCCGGY 1 cut(s) 376
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 2 cut(s) 100, 244
Bst4CI ACNGT 1 cut(s) 394
Bst6I CTCTTC 2 cut(s) 136, 284
BstDEI CTNAG 3 cut(s) 168, 341, 381
BstDSI CCRYGG 1 cut(s) 310
BstEII GGTNACC 1 cut(s) 320
BstF5I GGATG 4 cut(s) 10, 76, 238, 358
BstFNI CGCG 2 cut(s) 196, 312
BstKTI GATC 2 cut(s) 103, 247
BstMBI GATC 2 cut(s) 100, 244
BstMWI GCNNNNNNNGC 4 cut(s) 180, 292, 361, 412
BstPI GGTNACC 1 cut(s) 320
BstSFI CTRYAG 1 cut(s) 178
BstUI CGCG 2 cut(s) 196, 312
BstV1I GCAGC 3 cut(s) 195, 208, 424
BsuRI GGCC 1 cut(s) 67
BtgI CCRYGG 1 cut(s) 310
BtsCI GGATG 4 cut(s) 10, 76, 238, 358
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 288
CaiI CAGNNNCTG 1 cut(s) 415
CciI TCATGA 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 376
Cfr13I GGNCC 1 cut(s) 66
Cfr42I CCGCGG 1 cut(s) 313
CviAII CATG 1 cut(s) 29
CviJI RGCY 7 cut(s) 25, 67, 88, 186, 250, 380, 415
CviKI_1 RGCY 7 cut(s) 25, 67, 88, 186, 250, 380, 415
DdeI CTNAG 3 cut(s) 168, 341, 381
DpnI GATC 2 cut(s) 102, 246
DpnII GATC 2 cut(s) 100, 244
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
Eam1104I CTCTTC 2 cut(s) 136, 284
EarI CTCTTC 2 cut(s) 136, 284
EciI GGCGGA 1 cut(s) 351
Eco57I CTGAAG 2 cut(s) 66, 392
Eco91I GGTNACC 1 cut(s) 320
EcoO65I GGTNACC 1 cut(s) 320
EcoRI GAATTC 1 cut(s) 59
FaeI CATG 1 cut(s) 32
FaiI YATR 5 cut(s) 18, 30, 180, 230, 332
FatI CATG 1 cut(s) 28
FauI CCCGC 2 cut(s) 308, 317
Fnu4HI GCNGC 7 cut(s) 89, 184, 194, 222, 313, 353, 413
FokI GGATG 4 cut(s) 17, 63, 245, 345
Fsp4HI GCNGC 7 cut(s) 89, 184, 194, 222, 313, 353, 413
GluI GCNGC 7 cut(s) 89, 184, 194, 222, 313, 353, 413
HaeIII GGCC 1 cut(s) 67
HapII CCGG 4 cut(s) 125, 260, 272, 377
Hin1II CATG 1 cut(s) 32
HinfI GANTC 1 cut(s) 128
HpaII CCGG 4 cut(s) 125, 260, 272, 377
HphI GGTGA 5 cut(s) 47, 95, 298, 332, 382
Hpy188I TCNGA 5 cut(s) 85, 111, 169, 342, 384
Hpy188III TCNNGA 2 cut(s) 29, 426
HpyAV CCTTC 3 cut(s) 26, 90, 153
HpyCH4III ACNGT 1 cut(s) 394
HpyF10VI GCNNNNNNNGC 4 cut(s) 180, 292, 361, 412
HpyF3I CTNAG 3 cut(s) 168, 341, 381
Hsp92II CATG 1 cut(s) 32
KspI CCGCGG 1 cut(s) 313
Kzo9I GATC 2 cut(s) 100, 244
LpnPI CCDG 9 cut(s) 49, 138, 141, 267, 273, 279, 285, 390, 401
Lsp1109I GCAGC 3 cut(s) 195, 208, 424
LweI GCATC 2 cut(s) 304, 396
MaeIII GTNAC 1 cut(s) 320
MalI GATC 2 cut(s) 102, 246
MboI GATC 2 cut(s) 100, 244
MboII GAAGA 3 cut(s) 123, 207, 301
MluCI AATT 1 cut(s) 59
MlyI GAGTC 1 cut(s) 122
MroXI GAANNNNTTC 1 cut(s) 163
MslI CAYNNNNRTG 1 cut(s) 33
MspA1I CMGCKG 2 cut(s) 312, 415
MspI CCGG 4 cut(s) 125, 260, 272, 377
Mva1269I GAATGC 1 cut(s) 354
MvnI CGCG 2 cut(s) 196, 312
MwoI GCNNNNNNNGC 4 cut(s) 180, 292, 361, 412
NdeII GATC 2 cut(s) 100, 244
NlaIII CATG 1 cut(s) 32
NlaIV GGNNCC 1 cut(s) 264
NmuCI GTSAC 1 cut(s) 320
PagI TCATGA 1 cut(s) 28
PctI GAATGC 1 cut(s) 354
PdmI GAANNNNTTC 1 cut(s) 163
PkrI GCNGC 7 cut(s) 90, 185, 195, 223, 314, 354, 414
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PspEI GGTNACC 1 cut(s) 320
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 1 cut(s) 66
PstNI CAGNNNCTG 1 cut(s) 415
PvuII CAGCTG 1 cut(s) 415
RseI CAYNNNNRTG 1 cut(s) 33
SacII CCGCGG 1 cut(s) 313
SatI GCNGC 7 cut(s) 89, 184, 194, 222, 313, 353, 413
Sau3AI GATC 2 cut(s) 100, 244
Sau96I GGNCC 1 cut(s) 66
SchI GAGTC 1 cut(s) 122
SetI ASST 5 cut(s) 27, 37, 188, 240, 417
SfaNI GCATC 2 cut(s) 304, 396
SfcI CTRYAG 1 cut(s) 178
Sfr303I CCGCGG 1 cut(s) 313
SgrBI CCGCGG 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 33
Sse9I AATT 1 cut(s) 59
SsiI CCGC 8 cut(s) 89, 194, 286, 310, 312, 315, 353, 362
TaaI ACNGT 1 cut(s) 394
TaqI TCGA 2 cut(s) 51, 277
TasI AATT 1 cut(s) 59
TauI GCSGC 4 cut(s) 91, 196, 315, 355
TscAI CASTG 1 cut(s) 288
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 3 cut(s) 183, 221, 412
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 3 cut(s) 5, 17, 45
TspRI CASTG 1 cut(s) 288
XapI RAATTY 1 cut(s) 59
XmnI GAANNNNTTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.