AT2G02590

Putative small multi-drug export protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011202
Physical Location & Seq
Forward (+)
704836 .. 706686
1851 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G02590.1

Sequence Viewer

Length: 975 bp
ATGGCGATTTCTACATTACTCTCAATCTCTTCTTTCACTCTATCTTCTTCCTCATCAACAAAAACCCATCTCCTTACTTCAATACCTGCTTCAAGGGTTTATTCTTATCCAATTTCACCCAAATGGAAGCAAATTCGTTTCCTGCAGAGTCAAAGTTCCAGTCTTTTCTATCCATTACGCCGCAATTTCACCAGATTCTGTTCTTCTCCAGATGGGTTTCTCAGAAACACCAAAGACGACGAAGAAGGAAACGAAATCATTCAGCTTCCGTCTATTGGTGTAAACCCTGTGAAATTCGCGATTTGCGTTGTGTTGTGGGCTTCTTTCTCTCTGCTTTGGTTTGCTAGGTCTGGAGATGCCAAAGCTGCGACTGATTCTATCAAATCTTCGAGCTTTGGTCTCAGAATCGCCTCCACTCTTCGCCGTTTTGGTTGGCCAGACGAAGCTGTTGTGTTTGCTTTAGCTACTCTTCCGGTTATTGAACTCCGTGGTGCCATTCCTGTTGGTTATTGGATGCAACTAAAACCGGTGGTTCTCACTTCCTTCTCTGTTCTTGGCAATATGGTTCCAGTTCCATTCATCGTACTTTACCTCAAAACGTTTGCATCTTTTGTGGCGGGTAAGAGCCAAACAGCTTCTAAATTACTTGATATCTTGTTTAAAAGAGCTAAAGAGAAAGCTGGACCTGTGGAAGAGTTCAAATGGTTAGGGCTAATGCTCTTTGTAGCTGTTCCATTCCCTGGAACCGGTGCTTGGACAGGAGCTATAATAGCATCAATCCTCGACATGCCGTTTTGGTCTGCTGTTTCGTCTAATTTCTGCGGTGTAGTGTTGGCTGGACTGTTGGTGAACTTGCTGGTAAATCTTGGTTTGAAACAAGCCATTGTAGCTGGTATTGCTCTCTTCTTTGTATCTACGTTTATGTGGAGCGTTCTCAGAAACATTAGGAAGTCTATAAAACCATCGTTGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sm_multidrug_ex

Protein Analysis

324

Amino Acids

35.52

Weight (kDa)

10.05

Isoelectric Point (pI)

51.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sm_multidrug_ex PF06695 161 - 281 4.5e-38 Putative small multi-drug export protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02590
fragaria_vesca FvH4_4g32070
malus_domestica MD13G1079600.v1.1 MD16G1079500.v1.1
prunus_persica Prupe.1G267200_v2.0.a1
pyrus_communis pycom13g06930 pycom16g06870
rosa_chinensis RchiOBHm_Chr4g0440761
rosa_laevigata RLG00000006156
rosa_multiflora Rmu_co8415195.1_g000001 Rmu_sc0000424.1_g000005 Rmu_sc0022158.1_g000003
rosa_roxburghii Rroxscaffold_5G00381520
rosa_rugosa Rorug04G0327700
rosa_samantha Rh4AG379500 Rh4BG392400 Rh4CG407100 Rh4DG386200
rosa_wichuraiana Rw4G032640 Rw4G032670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 94
AccB1I GGYRCC 1 cut(s) 491
AccB7I CCANNNNNTGG 1 cut(s) 740
AccII CGCG 1 cut(s) 299
AciI CCGC 3 cut(s) 181, 617, 822
AclI AACGTT 1 cut(s) 599
AcoI YGGCCR 1 cut(s) 434
AcsI RAATTY 2 cut(s) 132, 293
AfaI GTAC 1 cut(s) 585
AfiI CCNNNNNNNGG 4 cut(s) 275, 740, 746, 753
AgeI ACCGGT 2 cut(s) 526, 746
AgsI TTSAA 5 cut(s) 81, 93, 482, 700, 874
AjnI CCWGG 1 cut(s) 739
AjuI GAANNNNNNNTTGG 2 cut(s) 736, 768
Alw26I GTCTC 1 cut(s) 404
AlwNI CAGNNNCTG 1 cut(s) 198
AoxI GGCC 1 cut(s) 434
ApeKI GCWGC 1 cut(s) 365
ApoI RAATTY 2 cut(s) 132, 293
ArsI GACNNNNNNTTYG 2 cut(s) 145, 177
AsiGI ACCGGT 2 cut(s) 526, 746
Asp700I GAANNNNTTC 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 683
AsuHPI GGTGA 3 cut(s) 108, 181, 859
AvaII GGWCC 1 cut(s) 683
BalI TGGCCA 1 cut(s) 436
BanI GGYRCC 1 cut(s) 491
BbvI GCAGC 1 cut(s) 352
BccI CCATC 3 cut(s) 75, 206, 970
BceAI ACGGC 2 cut(s) 408, 775
BciT130I CCWGG 1 cut(s) 741
BcoDI GTCTC 1 cut(s) 404
BfaI CTAG 1 cut(s) 345
BfmI CTRYAG 1 cut(s) 143
BfuAI ACCTGC 1 cut(s) 94
BisI GCNGC 2 cut(s) 181, 366
BlsI GCNGC 2 cut(s) 182, 367
Bme1390I CCNGG 1 cut(s) 741
Bme18I GGWCC 1 cut(s) 683
BmgT120I GGNCC 1 cut(s) 683
BmiI GGNNCC 3 cut(s) 493, 567, 745
BmrFI CCNGG 1 cut(s) 741
BmsI GCATC 4 cut(s) 346, 504, 614, 782
BpmI CTGGAG 2 cut(s) 192, 372
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 2 cut(s) 487, 739
BsaWI WCCGGW 3 cut(s) 472, 526, 746
Bsc4I CCNNNNNNNGG 4 cut(s) 275, 740, 746, 753
Bse118I RCCGGY 2 cut(s) 526, 746
Bse1I ACTGG 2 cut(s) 159, 569
BseBI CCWGG 1 cut(s) 741
BseDI CCNNGG 2 cut(s) 487, 739
BseGI GGATG 1 cut(s) 519
BseLI CCNNNNNNNGG 4 cut(s) 275, 740, 746, 753
BseMII CTCAG 3 cut(s) 235, 415, 949
BseNI ACTGG 2 cut(s) 159, 569
BseXI GCAGC 1 cut(s) 352
Bsh1236I CGCG 1 cut(s) 299
BshFI GGCC 1 cut(s) 436
BshNI GGYRCC 1 cut(s) 491
BshTI ACCGGT 2 cut(s) 526, 746
BsiSI CCGG 3 cut(s) 473, 527, 747
BslI CCNNNNNNNGG 4 cut(s) 275, 740, 746, 753
BsmAI GTCTC 1 cut(s) 404
BsnI GGCC 1 cut(s) 436
Bso31I GGTCTC 1 cut(s) 404
Bsp68I TCGCGA 1 cut(s) 299
BspACI CCGC 3 cut(s) 181, 617, 822
BspANI GGCC 1 cut(s) 436
BspCNI CTCAG 3 cut(s) 234, 414, 948
BspFNI CGCG 1 cut(s) 299
BspLI GGNNCC 3 cut(s) 493, 567, 745
BspMAI CTGCAG 1 cut(s) 147
BspMI ACCTGC 1 cut(s) 94
BspT107I GGYRCC 1 cut(s) 491
BspTNI GGTCTC 1 cut(s) 404
BsrFI RCCGGY 2 cut(s) 526, 746
BsrI ACTGG 2 cut(s) 159, 569
BssAI RCCGGY 2 cut(s) 526, 746
BssECI CCNNGG 2 cut(s) 487, 739
Bst2UI CCWGG 1 cut(s) 741
Bst4CI ACNGT 1 cut(s) 843
Bst6I CTCTTC 5 cut(s) 34, 423, 474, 687, 908
BstDEI CTNAG 3 cut(s) 221, 401, 935
BstDSI CCRYGG 1 cut(s) 487
BstF5I GGATG 1 cut(s) 519
BstFNI CGCG 1 cut(s) 299
BstMAI GTCTC 1 cut(s) 404
BstMWI GCNNNNNNNGC 4 cut(s) 365, 770, 887, 896
BstNI CCWGG 1 cut(s) 741
BstNSI RCATGY 1 cut(s) 790
BstSCI CCNGG 1 cut(s) 739
BstSFI CTRYAG 1 cut(s) 143
BstUI CGCG 1 cut(s) 299
BstV1I GCAGC 1 cut(s) 352
BsuRI GGCC 1 cut(s) 436
BtgI CCRYGG 1 cut(s) 487
BtsCI GGATG 1 cut(s) 519
BtuMI TCGCGA 1 cut(s) 299
BveI ACCTGC 1 cut(s) 94
CaiI CAGNNNCTG 1 cut(s) 198
Cfr10I RCCGGY 2 cut(s) 526, 746
Cfr13I GGNCC 1 cut(s) 683
Csp6I GTAC 1 cut(s) 584
CspAI ACCGGT 2 cut(s) 526, 746
CviAII CATG 1 cut(s) 787
CviQI GTAC 1 cut(s) 584
DdeI CTNAG 3 cut(s) 221, 401, 935
DraI TTTAAA 1 cut(s) 661
EaeI YGGCCR 1 cut(s) 434
Eam1104I CTCTTC 5 cut(s) 34, 423, 474, 687, 908
EarI CTCTTC 5 cut(s) 34, 423, 474, 687, 908
Eco31I GGTCTC 1 cut(s) 404
Eco32I GATATC 1 cut(s) 652
Eco47I GGWCC 1 cut(s) 683
EcoRII CCWGG 1 cut(s) 739
EcoRV GATATC 1 cut(s) 652
FaeI CATG 1 cut(s) 790
FaiI YATR 5 cut(s) 563, 767, 788, 923, 956
FatI CATG 1 cut(s) 786
FauI CCCGC 1 cut(s) 610
Fnu4HI GCNGC 2 cut(s) 181, 366
FokI GGATG 1 cut(s) 526
Fsp4HI GCNGC 2 cut(s) 181, 366
FspBI CTAG 1 cut(s) 345
GluI GCNGC 2 cut(s) 181, 366
GsuI CTGGAG 2 cut(s) 192, 372
HaeIII GGCC 1 cut(s) 436
HapII CCGG 3 cut(s) 473, 527, 747
Hin1II CATG 1 cut(s) 790
HinfI GANTC 4 cut(s) 148, 195, 374, 405
HpaII CCGG 3 cut(s) 473, 527, 747
HphI GGTGA 3 cut(s) 108, 181, 859
Hpy166II GTNNAC 2 cut(s) 283, 850
Hpy188I TCNGA 3 cut(s) 224, 404, 938
Hpy188III TCNNGA 3 cut(s) 209, 298, 351
Hpy8I GTNNAC 2 cut(s) 283, 850
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 2 cut(s) 239, 553
HpyCH4III ACNGT 1 cut(s) 843
HpyCH4IV ACGT 2 cut(s) 599, 917
HpyCH4V TGCA 3 cut(s) 145, 517, 605
HpyF10VI GCNNNNNNNGC 4 cut(s) 365, 770, 887, 896
HpyF3I CTNAG 3 cut(s) 221, 401, 935
HpySE526I ACGT 2 cut(s) 599, 917
Hsp92II CATG 1 cut(s) 790
LmnI GCTCC 2 cut(s) 761, 927
Lsp1109I GCAGC 1 cut(s) 352
LweI GCATC 4 cut(s) 346, 504, 614, 782
MaeI CTAG 1 cut(s) 345
MaeII ACGT 2 cut(s) 599, 917
MlsI TGGCCA 1 cut(s) 436
MluCI AATT 6 cut(s) 111, 132, 184, 293, 641, 814
MluNI TGGCCA 1 cut(s) 436
MlyI GAGTC 1 cut(s) 157
MnlI CCTC 4 cut(s) 61, 421, 602, 791
Mox20I TGGCCA 1 cut(s) 436
MroXI GAANNNNTTC 1 cut(s) 258
MscI TGGCCA 1 cut(s) 436
MseI TTAA 1 cut(s) 660
MslI CAYNNNNRTG 1 cut(s) 121
Msp20I TGGCCA 1 cut(s) 436
MspI CCGG 3 cut(s) 473, 527, 747
MspR9I CCNGG 1 cut(s) 741
MvaI CCWGG 1 cut(s) 741
MvnI CGCG 1 cut(s) 299
MwoI GCNNNNNNNGC 4 cut(s) 365, 770, 887, 896
NlaIII CATG 1 cut(s) 790
NlaIV GGNNCC 3 cut(s) 493, 567, 745
NruI TCGCGA 1 cut(s) 299
NspI RCATGY 1 cut(s) 790
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PdmI GAANNNNTTC 1 cut(s) 258
PfeI GAWTC 3 cut(s) 195, 374, 405
PflMI CCANNNNNTGG 1 cut(s) 740
PinAI ACCGGT 2 cut(s) 526, 746
PkrI GCNGC 2 cut(s) 182, 367
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
Psp1406I AACGTT 1 cut(s) 599
Psp6I CCWGG 1 cut(s) 739
PspGI CCWGG 1 cut(s) 739
PspN4I GGNNCC 3 cut(s) 493, 567, 745
PspPI GGNCC 1 cut(s) 683
PstI CTGCAG 1 cut(s) 147
PstNI CAGNNNCTG 1 cut(s) 198
RruI TCGCGA 1 cut(s) 299
RsaI GTAC 1 cut(s) 585
RsaNI GTAC 1 cut(s) 584
RseI CAYNNNNRTG 1 cut(s) 121
SaqAI TTAA 1 cut(s) 660
SatI GCNGC 2 cut(s) 181, 366
Sau96I GGNCC 1 cut(s) 683
SchI GAGTC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 741
SfaNI GCATC 4 cut(s) 346, 504, 614, 782
SfcI CTRYAG 1 cut(s) 143
SinI GGWCC 1 cut(s) 683
SmiMI CAYNNNNRTG 1 cut(s) 121
Sse9I AATT 6 cut(s) 111, 132, 184, 293, 641, 814
SsiI CCGC 3 cut(s) 181, 617, 822
SspMI CTAG 1 cut(s) 345
StyD4I CCNGG 1 cut(s) 739
TaaI ACNGT 1 cut(s) 843
TaiI ACGT 2 cut(s) 602, 920
TaqI TCGA 2 cut(s) 389, 783
TasI AATT 6 cut(s) 111, 132, 184, 293, 641, 814
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 3 cut(s) 195, 374, 405
Tru1I TTAA 1 cut(s) 660
Tru9I TTAA 1 cut(s) 660
TseI GCWGC 1 cut(s) 365
TspDTI ATGAA 1 cut(s) 568
TspGWI ACGGA 2 cut(s) 258, 476
Van91I CCANNNNNTGG 1 cut(s) 740
VpaK11BI GGWCC 1 cut(s) 683
XapI RAATTY 2 cut(s) 132, 293
XceI RCATGY 1 cut(s) 790
XmnI GAANNNNTTC 1 cut(s) 258
XspI CTAG 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.