MD13G1079600.v1.1

Putative small multi-drug export protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0011202
Physical Location & Seq
Reverse (-)
5599512 .. 5601366
1855 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1079600.v1.1.491

Sequence Viewer

Length: 975 bp
ATGGCTGCATCTCTATCAGCATCCACATCGCCATGGACGTCAAATTTGTCTCTCAGAAAAACCCACTTCGTATTTTCACCACAAAATAGCCGTCCAATCATTACCCACATCAAACAATCCCCTTCCAGCCCCAATGCTGAGTTGAAGTTTCAAACTTTGCCCAATTTAAACCCCTCTATTGTAATTTCACCCCTCGCTCGCGCTGCATCACGAGTTTCCTCACGTGGGTTTCTTGAAACAGACGAGGAAGATGAGCTTTTGCCGTTGTTTGAGCGGCCGGTCAAATTTGCCCTTTGGGTTTTGGTCTGGGCATCTGTATCGCTTGCTTTGTTCGCGGCTTCCGGAAATGCAAATGCTGCTGCTGCGGCGGCTGCGGATTCAATCAGAGCCTCCAACTTTGGCCTGAAGATTGCGACGGCGCTTCGAAGCTCCGGCTGGCCTGATGAGGCTGTGGTGTTTGCTCTGGCCACACTTCCGGTCATCGAGCTTCGTGGGGCTATTCCTGTTGGTTACTGGATGCAGCTTAAGCCTGTTCTGCTAACAGTTCTATCTGTTATTGGGAACATGATTCCTGTGCCCTTCATCATACTTTACCTGAAGAGATTTGCATCTTTCCTTGCTGGAAAGAACAAGGCTGCAGCTCGGTTCCTTGACTTGCTGTTTGTGAGGGCTAAAGAGAAAGCTGGCCCTGTAGAGGAGTTCCAATGGCTTGGTCTGATGCTGTTTGTGGCTGTGCCTTTCCCGGGAACAGGAGCATGGACAGGGGCCATCATAGCTTCCATTCTCGACATGCCATTCTGGTCAGCGGTGTCTGCAAATTTCTTTGGTGTTGTGTTGGCCGGGCTTCTGGTAAATTTGCTGGTGAACCTTGGCCTCAAATATGCAGTTGTTACTGGTAGTGTCCTCTTCTTTATTTCCACATTCATGTGGAGCATCCTTCGGAATCTTAAGAAGTCTTTAAGCTCATCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sm_multidrug_ex

Protein Analysis

325

Amino Acids

34.98

Weight (kDa)

10.04

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sm_multidrug_ex PF06695 162 - 282 9.9e-39 Putative small multi-drug export protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02590
fragaria_vesca FvH4_4g32070
malus_domestica MD13G1079600.v1.1 MD16G1079500.v1.1
prunus_persica Prupe.1G267200_v2.0.a1
pyrus_communis pycom13g06930 pycom16g06870
rosa_chinensis RchiOBHm_Chr4g0440761
rosa_laevigata RLG00000006156
rosa_multiflora Rmu_co8415195.1_g000001 Rmu_sc0000424.1_g000005 Rmu_sc0022158.1_g000003
rosa_roxburghii Rroxscaffold_5G00381520
rosa_rugosa Rorug04G0327700
rosa_samantha Rh4AG379500 Rh4BG392400 Rh4CG407100 Rh4DG386200
rosa_wichuraiana Rw4G032640 Rw4G032670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 41
AccBSI CCGCTC 1 cut(s) 274
AccII CGCG 2 cut(s) 201, 335
AccIII TCCGGA 1 cut(s) 341
AciI CCGC 6 cut(s) 274, 335, 365, 368, 374, 806
AcoI YGGCCR 3 cut(s) 275, 465, 837
AcsI RAATTY 4 cut(s) 43, 284, 817, 853
AcuI CTGAAG 2 cut(s) 425, 617
AcvI CACGTG 1 cut(s) 224
AcyI GRCGYC 1 cut(s) 38
AfiI CCNNNNNNNGG 4 cut(s) 225, 694, 743, 749
AflII CTTAAG 2 cut(s) 524, 947
AgsI TTSAA 4 cut(s) 145, 152, 236, 381
AluBI AGCT 8 cut(s) 256, 429, 487, 523, 641, 683, 776, 963
AluI AGCT 8 cut(s) 256, 429, 487, 523, 641, 683, 776, 963
Alw26I GTCTC 1 cut(s) 54
Ama87I CYCGRG 1 cut(s) 742
Aor13HI TCCGGA 1 cut(s) 341
AoxI GGCC 8 cut(s) 275, 400, 437, 465, 685, 765, 837, 871
ApeKI GCWGC 9 cut(s) 5, 203, 356, 359, 362, 371, 520, 635, 638
ApoI RAATTY 4 cut(s) 43, 284, 817, 853
ArsI GACNNNNNNTTYG 6 cut(s) 28, 60, 76, 108, 644, 676
AspLEI GCGC 2 cut(s) 203, 421
AspS9I GGNCC 2 cut(s) 686, 765
AsuC2I CCSGG 3 cut(s) 743, 744, 841
AsuHPI GGTGA 3 cut(s) 69, 180, 874
AsuII TTCGAA 1 cut(s) 424
AvaI CYCGRG 1 cut(s) 742
BaeGI GKGCMC 1 cut(s) 579
BalI TGGCCA 1 cut(s) 467
BauI CACGAG 1 cut(s) 210
BbrPI CACGTG 1 cut(s) 224
BbvI GCAGC 8 cut(s) 190, 343, 346, 349, 358, 532, 622, 650
BccI CCATC 1 cut(s) 776
BceAI ACGGC 3 cut(s) 75, 247, 432
BcgI CGANNNNNNTGC 4 cut(s) 9, 43, 300, 334
BcnI CCSGG 3 cut(s) 743, 744, 841
BcoDI GTCTC 1 cut(s) 54
BfmI CTRYAG 2 cut(s) 636, 690
BfoI RGCGCY 1 cut(s) 422
BfrI CTTAAG 2 cut(s) 524, 947
Bme1390I CCNGG 3 cut(s) 743, 744, 841
BmeT110I CYCGRG 1 cut(s) 742
BmgT120I GGNCC 2 cut(s) 686, 765
BmiI GGNNCC 2 cut(s) 647, 766
BmrFI CCNGG 3 cut(s) 743, 744, 841
BmsI GCATC 8 cut(s) 17, 29, 215, 320, 507, 617, 708, 942
Bpu14I TTCGAA 1 cut(s) 424
BpuMI CCSGG 3 cut(s) 743, 744, 841
BsaAI YACGTR 1 cut(s) 224
BsaBI GATNNNNATC 1 cut(s) 607
BsaHI GRCGYC 1 cut(s) 38
BsaJI CCNNGG 3 cut(s) 32, 742, 868
BsaWI WCCGGW 2 cut(s) 341, 475
Bsc4I CCNNNNNNNGG 4 cut(s) 225, 694, 743, 749
Bse118I RCCGGY 1 cut(s) 277
Bse1I ACTGG 2 cut(s) 518, 898
Bse8I GATNNNNATC 1 cut(s) 607
BseAI TCCGGA 1 cut(s) 341
BseDI CCNNGG 3 cut(s) 32, 742, 868
BseGI GGATG 3 cut(s) 20, 522, 933
BseJI GATNNNNATC 1 cut(s) 607
BseLI CCNNNNNNNGG 4 cut(s) 225, 694, 743, 749
BseMII CTCAG 2 cut(s) 67, 129
BseNI ACTGG 2 cut(s) 518, 898
BseRI GAGGAG 1 cut(s) 710
BseSI GKGCMC 1 cut(s) 579
BseX3I CGGCCG 1 cut(s) 275
BseXI GCAGC 8 cut(s) 190, 343, 346, 349, 358, 532, 622, 650
Bsh1236I CGCG 2 cut(s) 201, 335
Bsh1285I CGRYCG 1 cut(s) 278
BshFI GGCC 8 cut(s) 277, 402, 439, 467, 687, 767, 839, 873
BsiEI CGRYCG 1 cut(s) 278
BsiHKCI CYCGRG 1 cut(s) 742
BsiSI CCGG 6 cut(s) 278, 342, 432, 476, 743, 840
BslI CCNNNNNNNGG 4 cut(s) 225, 694, 743, 749
BsmAI GTCTC 1 cut(s) 54
BsnI GGCC 8 cut(s) 277, 402, 439, 467, 687, 767, 839, 873
BsoBI CYCGRG 1 cut(s) 742
Bsp119I TTCGAA 1 cut(s) 424
Bsp1286I GDGCHC 1 cut(s) 579
Bsp13I TCCGGA 1 cut(s) 341
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 6 cut(s) 274, 335, 365, 368, 374, 806
BspANI GGCC 8 cut(s) 277, 402, 439, 467, 687, 767, 839, 873
BspCNI CTCAG 2 cut(s) 66, 130
BspEI TCCGGA 1 cut(s) 341
BspFNI CGCG 2 cut(s) 201, 335
BspLI GGNNCC 2 cut(s) 647, 766
BspMAI CTGCAG 1 cut(s) 640
BspT104I TTCGAA 1 cut(s) 424
BspTI CTTAAG 2 cut(s) 524, 947
BsrBI CCGCTC 1 cut(s) 274
BsrFI RCCGGY 1 cut(s) 277
BsrI ACTGG 2 cut(s) 518, 898
BssAI RCCGGY 1 cut(s) 277
BssECI CCNNGG 3 cut(s) 32, 742, 868
BssNI GRCGYC 1 cut(s) 38
BssSI CACGAG 1 cut(s) 210
BssT1I CCWWGG 2 cut(s) 32, 868
Bst2BI CACGAG 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 544
Bst6I CTCTTC 2 cut(s) 593, 911
BstACI GRCGYC 1 cut(s) 38
BstAFI CTTAAG 2 cut(s) 524, 947
BstAPI GCANNNNNTGC 1 cut(s) 356
BstBAI YACGTR 1 cut(s) 224
BstBI TTCGAA 1 cut(s) 424
BstC8I GCNNGC 4 cut(s) 199, 324, 437, 685
BstDEI CTNAG 2 cut(s) 53, 138
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 3 cut(s) 20, 522, 933
BstFNI CGCG 2 cut(s) 201, 335
BstH2I RGCGCY 1 cut(s) 422
BstHHI GCGC 2 cut(s) 203, 421
BstMAI GTCTC 1 cut(s) 54
BstMCI CGRYCG 1 cut(s) 278
BstNSI RCATGY 1 cut(s) 793
BstSCI CCNGG 3 cut(s) 741, 742, 839
BstSFI CTRYAG 2 cut(s) 636, 690
BstSLI GKGCMC 1 cut(s) 579
BstUI CGCG 2 cut(s) 201, 335
BstV1I GCAGC 8 cut(s) 190, 343, 346, 349, 358, 532, 622, 650
BstXI CCANNNNNNTGG 1 cut(s) 710
BstZI CGGCCG 1 cut(s) 275
BsuRI GGCC 8 cut(s) 277, 402, 439, 467, 687, 767, 839, 873
BtgI CCRYGG 1 cut(s) 32
BtgZI GCGATG 1 cut(s) 12
BtsCI GGATG 3 cut(s) 20, 522, 933
Cac8I GCNNGC 4 cut(s) 199, 324, 437, 685
CfoI GCGC 2 cut(s) 203, 421
Cfr10I RCCGGY 1 cut(s) 277
Cfr13I GGNCC 2 cut(s) 686, 765
Cfr9I CCCGGG 1 cut(s) 742
CviAII CATG 5 cut(s) 33, 565, 756, 790, 925
DdeI CTNAG 2 cut(s) 53, 138
DraI TTTAAA 1 cut(s) 168
EaeI YGGCCR 3 cut(s) 275, 465, 837
EagI CGGCCG 1 cut(s) 275
Eam1104I CTCTTC 2 cut(s) 593, 911
EarI CTCTTC 2 cut(s) 593, 911
EclXI CGGCCG 1 cut(s) 275
Eco130I CCWWGG 2 cut(s) 32, 868
Eco52I CGGCCG 1 cut(s) 275
Eco57I CTGAAG 2 cut(s) 425, 617
Eco72I CACGTG 1 cut(s) 224
Eco88I CYCGRG 1 cut(s) 742
EcoT14I CCWWGG 2 cut(s) 32, 868
ErhI CCWWGG 2 cut(s) 32, 868
FaeI CATG 5 cut(s) 36, 568, 759, 793, 928
FaiI YATR 8 cut(s) 34, 566, 587, 757, 773, 791, 882, 926
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FatI CATG 5 cut(s) 32, 564, 755, 789, 924
FokI GGATG 3 cut(s) 7, 529, 920
GlaI GCGC 2 cut(s) 202, 420
HaeII RGCGCY 1 cut(s) 422
HaeIII GGCC 8 cut(s) 277, 402, 439, 467, 687, 767, 839, 873
HapII CCGG 6 cut(s) 278, 342, 432, 476, 743, 840
HhaI GCGC 2 cut(s) 203, 421
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 5 cut(s) 36, 568, 759, 793, 928
Hin6I GCGC 2 cut(s) 201, 419
HinP1I GCGC 2 cut(s) 201, 419
HinfI GANTC 3 cut(s) 377, 568, 943
HpaII CCGG 6 cut(s) 278, 342, 432, 476, 743, 840
HphI GGTGA 3 cut(s) 69, 180, 874
Hpy166II GTNNAC 1 cut(s) 865
Hpy188I TCNGA 4 cut(s) 56, 386, 717, 942
Hpy188III TCNNGA 4 cut(s) 210, 233, 342, 785
Hpy8I GTNNAC 1 cut(s) 865
Hpy99I CGWCG 1 cut(s) 418
HpyAV CCTTC 3 cut(s) 132, 589, 947
HpyCH4III ACNGT 1 cut(s) 544
HpyCH4IV ACGT 2 cut(s) 38, 223
HpyCH4V TGCA 8 cut(s) 8, 206, 350, 520, 608, 638, 815, 884
HpyF3I CTNAG 2 cut(s) 53, 138
HpySE526I ACGT 2 cut(s) 38, 223
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 5 cut(s) 36, 568, 759, 793, 928
HspAI GCGC 2 cut(s) 201, 419
Kpn2I TCCGGA 1 cut(s) 341
LmnI GCTCC 3 cut(s) 434, 752, 930
Lsp1109I GCAGC 8 cut(s) 190, 343, 346, 349, 358, 532, 622, 650
LweI GCATC 8 cut(s) 17, 29, 215, 320, 507, 617, 708, 942
MaeII ACGT 2 cut(s) 38, 223
MaeIII GTNAC 2 cut(s) 509, 889
MbiI CCGCTC 1 cut(s) 274
MboII GAAGA 4 cut(s) 260, 418, 610, 898
MhlI GDGCHC 1 cut(s) 579
MlsI TGGCCA 1 cut(s) 467
MluCI AATT 6 cut(s) 43, 163, 183, 284, 817, 853
MluNI TGGCCA 1 cut(s) 467
MmeI TCCRAC 1 cut(s) 417
Mox20I TGGCCA 1 cut(s) 467
MroI TCCGGA 1 cut(s) 341
MscI TGGCCA 1 cut(s) 467
MseI TTAA 4 cut(s) 167, 525, 948, 959
MslI CAYNNNNRTG 3 cut(s) 31, 923, 925
Msp20I TGGCCA 1 cut(s) 467
MspA1I CMGCKG 1 cut(s) 806
MspCI CTTAAG 2 cut(s) 524, 947
MspI CCGG 6 cut(s) 278, 342, 432, 476, 743, 840
MspR9I CCNGG 3 cut(s) 743, 744, 841
MvnI CGCG 2 cut(s) 201, 335
NciI CCSGG 3 cut(s) 743, 744, 841
NcoI CCATGG 1 cut(s) 32
NlaIII CATG 5 cut(s) 36, 568, 759, 793, 928
NlaIV GGNNCC 2 cut(s) 647, 766
NspI RCATGY 1 cut(s) 793
NspV TTCGAA 1 cut(s) 424
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PfeI GAWTC 3 cut(s) 377, 568, 943
PmaCI CACGTG 1 cut(s) 224
PmlI CACGTG 1 cut(s) 224
Ppu21I YACGTR 1 cut(s) 224
PspCI CACGTG 1 cut(s) 224
PspN4I GGNNCC 2 cut(s) 647, 766
PspPI GGNCC 2 cut(s) 686, 765
PstI CTGCAG 1 cut(s) 640
RseI CAYNNNNRTG 3 cut(s) 31, 923, 925
SaqAI TTAA 4 cut(s) 167, 525, 948, 959
Sau96I GGNCC 2 cut(s) 686, 765
ScrFI CCNGG 3 cut(s) 743, 744, 841
SduI GDGCHC 1 cut(s) 579
SfaNI GCATC 8 cut(s) 17, 29, 215, 320, 507, 617, 708, 942
SfcI CTRYAG 2 cut(s) 636, 690
SfuI TTCGAA 1 cut(s) 424
SmaI CCCGGG 1 cut(s) 744
SmiMI CAYNNNNRTG 3 cut(s) 31, 923, 925
SmlI CTYRAG 2 cut(s) 524, 947
SmoI CTYRAG 2 cut(s) 524, 947
Sse9I AATT 6 cut(s) 43, 163, 183, 284, 817, 853
SsiI CCGC 6 cut(s) 274, 335, 365, 368, 374, 806
StyD4I CCNGG 3 cut(s) 741, 742, 839
StyI CCWWGG 2 cut(s) 32, 868
TaaI ACNGT 1 cut(s) 544
TaiI ACGT 2 cut(s) 41, 226
TaqI TCGA 3 cut(s) 424, 483, 786
TasI AATT 6 cut(s) 43, 163, 183, 284, 817, 853
TauI GCSGC 4 cut(s) 277, 338, 368, 371
TfiI GAWTC 3 cut(s) 377, 568, 943
Tru1I TTAA 4 cut(s) 167, 525, 948, 959
Tru9I TTAA 4 cut(s) 167, 525, 948, 959
TseI GCWGC 9 cut(s) 5, 203, 356, 359, 362, 371, 520, 635, 638
TspDTI ATGAA 2 cut(s) 571, 913
TspMI CCCGGG 1 cut(s) 742
Vha464I CTTAAG 2 cut(s) 524, 947
XapI RAATTY 4 cut(s) 43, 284, 817, 853
XceI RCATGY 1 cut(s) 793
XmaI CCCGGG 1 cut(s) 742
ZraI GACGTC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.