RchiOBHm_Chr4g0440761

Putative small multi-drug export protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0011202
Physical Location & Seq
Reverse (-)
62767242 .. 62769507
2266 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40870

Sequence Viewer

Length: 960 bp
ATGGCTGTAACTCTATCAGCCTCAGCATCTCCATTAACATCAAAATTGATTCTTGGCAAAACCCTCCTCAGATTTTCACCAAAACACTCCCACCCTTTCACTCCCCAAACCAAACAACCCCCATTCAATCCAAATGGACTCATAAAGCTTCAATCTTTACGCCCAGTAGTCCCTATTCTGAAAGCTTCTCCTCCACGAGCTTCTTCAAATGGGTTTGAGGAAGATGAGGTCTTGTCAATTTTCCAAGAACGGCCGGTCAAATTTGGGCTTTGGGTGTTGCTTTGGGCCTCTGTTTCACTTGCTTGGTTTGCTGCTTCCGGGGATGCCAATGCAGCTGCCACTGCTGCTGCTGCTGCTGCTGATTCGATTAGAGCTTCCTCTTTCGGCCTGAAGATTGCGAATGGGCTTCGGGGTTTGGGCTGGCCTGATGAGGCTGTGGTGTTTGCATTGGCTACGCTTCCGGTGATTGAGCTTCGTGGGGCTATTCCTGTTGGTTATTGGTTGCAACTCAAGCCTGTTTTGCTAACTGTTCTAGCTGTTCTTGGGAACATGGTTCCTGTGCCCTTCATCATACTTTACTTGAAGAGATTTGCATCTTTCCTTGCTGGAAAGAATAAAGCTGCATCTCAGTTCCTTGACTTACTGTTTGAGAAGGCTAAAAAGAAAGCTGGCCCTGTAGAGGAGTTCCAATGGCTTGGTCTGATGCTGTTTGTGGCTGTGCCTTTCCCGGGAACAGGAGCATGGACAGGAGCCATTGTAGCTTCTATTCTTGATATGCCATTTTGGTCAGCAGTGTCCGCAAATTTCTTTGGTGTTGTGTTGGCTGGGCTTCTAGTGAATTTGCTGGTGAACCTTGGTCTCAGATATGCTATTGTTACTGGTATTGTTCTCTTCTTTATCTCTACGTTCATGTGGAGCATCCTTCGGAATCTTAAGAAGTCCTTAAGCTCATCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sm_multidrug_ex

Protein Analysis

319

Amino Acids

34.28

Weight (kDa)

10.11

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sm_multidrug_ex PF06695 157 - 277 3e-39 Putative small multi-drug export protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02590
fragaria_vesca FvH4_4g32070
malus_domestica MD13G1079600.v1.1 MD16G1079500.v1.1
prunus_persica Prupe.1G267200_v2.0.a1
pyrus_communis pycom13g06930 pycom16g06870
rosa_chinensis RchiOBHm_Chr4g0440761
rosa_laevigata RLG00000006156
rosa_multiflora Rmu_co8415195.1_g000001 Rmu_sc0000424.1_g000005 Rmu_sc0022158.1_g000003
rosa_roxburghii Rroxscaffold_5G00381520
rosa_rugosa Rorug04G0327700
rosa_samantha Rh4AG379500 Rh4BG392400 Rh4CG407100 Rh4DG386200
rosa_wichuraiana Rw4G032640 Rw4G032670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 798
AcoI YGGCCR 1 cut(s) 251
AcsI RAATTY 3 cut(s) 260, 802, 838
AcuI CTGAAG 1 cut(s) 410
AfiI CCNNNNNNNGG 3 cut(s) 679, 728, 734
AflII CTTAAG 2 cut(s) 932, 943
AgsI TTSAA 4 cut(s) 127, 152, 207, 583
Alw26I GTCTC 1 cut(s) 863
Ama87I CYCGRG 1 cut(s) 727
AoxI GGCC 5 cut(s) 251, 285, 385, 422, 670
ApeKI GCWGC 9 cut(s) 311, 332, 335, 344, 347, 350, 353, 356, 620
ApoI RAATTY 3 cut(s) 260, 802, 838
ArsI GACNNNNNNTTYG 2 cut(s) 629, 661
AspS9I GGNCC 2 cut(s) 285, 671
AsuC2I CCSGG 3 cut(s) 319, 728, 729
AsuHPI GGTGA 3 cut(s) 69, 475, 859
AvaI CYCGRG 1 cut(s) 727
BaeGI GKGCMC 1 cut(s) 564
BauI CACGAG 1 cut(s) 195
BbvCI CCTCAGC 1 cut(s) 22
BbvI GCAGC 9 cut(s) 298, 322, 331, 334, 337, 340, 343, 344, 607
BceAI ACGGC 1 cut(s) 266
BcnI CCSGG 3 cut(s) 319, 728, 729
BcoDI GTCTC 1 cut(s) 863
BfaI CTAG 2 cut(s) 533, 833
BfmI CTRYAG 1 cut(s) 675
BfrI CTTAAG 2 cut(s) 932, 943
BisI GCNGC 9 cut(s) 312, 333, 336, 345, 348, 351, 354, 357, 621
BlsI GCNGC 9 cut(s) 313, 334, 337, 346, 349, 352, 355, 358, 622
Bme1390I CCNGG 3 cut(s) 319, 728, 729
BmeT110I CYCGRG 1 cut(s) 727
BmgT120I GGNCC 2 cut(s) 285, 671
BmiI GGNNCC 2 cut(s) 555, 751
BmrFI CCNGG 3 cut(s) 319, 728, 729
BmrI ACTGGG 1 cut(s) 158
BmsI GCATC 6 cut(s) 35, 313, 602, 632, 693, 927
BmuI ACTGGG 1 cut(s) 158
Bpu10I CCTNAGC 1 cut(s) 22
BpuEI CTTGAG 1 cut(s) 494
BpuMI CCSGG 3 cut(s) 319, 728, 729
BsaBI GATNNNNATC 1 cut(s) 592
BsaI GGTCTC 1 cut(s) 863
BsaJI CCNNGG 3 cut(s) 318, 727, 853
BsaWI WCCGGW 1 cut(s) 460
BsaXI ACNNNNNCTCC 2 cut(s) 741, 771
Bsc4I CCNNNNNNNGG 3 cut(s) 679, 728, 734
Bse118I RCCGGY 1 cut(s) 253
Bse1I ACTGG 2 cut(s) 164, 883
Bse8I GATNNNNATC 1 cut(s) 592
BseDI CCNNGG 3 cut(s) 318, 727, 853
BseGI GGATG 2 cut(s) 328, 918
BseJI GATNNNNATC 1 cut(s) 592
BseLI CCNNNNNNNGG 3 cut(s) 679, 728, 734
BseMII CTCAG 4 cut(s) 36, 82, 641, 874
BseNI ACTGG 2 cut(s) 164, 883
BseRI GAGGAG 3 cut(s) 56, 180, 695
BseSI GKGCMC 1 cut(s) 564
BseX3I CGGCCG 1 cut(s) 251
BseXI GCAGC 9 cut(s) 298, 322, 331, 334, 337, 340, 343, 344, 607
BseYI CCCAGC 1 cut(s) 824
Bsh1285I CGRYCG 1 cut(s) 254
BshFI GGCC 5 cut(s) 253, 287, 387, 424, 672
BsiEI CGRYCG 1 cut(s) 254
BsiHKCI CYCGRG 1 cut(s) 727
BsiSI CCGG 4 cut(s) 254, 318, 461, 728
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 3 cut(s) 679, 728, 734
BsmAI GTCTC 1 cut(s) 863
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 5 cut(s) 253, 287, 387, 424, 672
Bso31I GGTCTC 1 cut(s) 863
BsoBI CYCGRG 1 cut(s) 727
Bsp1286I GDGCHC 1 cut(s) 564
BspACI CCGC 1 cut(s) 798
BspANI GGCC 5 cut(s) 253, 287, 387, 424, 672
BspCNI CTCAG 4 cut(s) 35, 81, 640, 873
BspLI GGNNCC 2 cut(s) 555, 751
BspTI CTTAAG 2 cut(s) 932, 943
BspTNI GGTCTC 1 cut(s) 863
BsrFI RCCGGY 1 cut(s) 253
BsrI ACTGG 2 cut(s) 164, 883
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 3 cut(s) 318, 727, 853
BssSI CACGAG 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 853
Bst2BI CACGAG 1 cut(s) 195
Bst4CI ACNGT 2 cut(s) 529, 645
Bst6I CTCTTC 2 cut(s) 578, 896
BstAFI CTTAAG 2 cut(s) 932, 943
BstC8I GCNNGC 2 cut(s) 422, 670
BstDEI CTNAG 4 cut(s) 22, 68, 627, 860
BstF5I GGATG 2 cut(s) 328, 918
BstMAI GTCTC 1 cut(s) 863
BstMCI CGRYCG 1 cut(s) 254
BstSCI CCNGG 3 cut(s) 317, 726, 727
BstSFI CTRYAG 1 cut(s) 675
BstSLI GKGCMC 1 cut(s) 564
BstV1I GCAGC 9 cut(s) 298, 322, 331, 334, 337, 340, 343, 344, 607
BstXI CCANNNNNNTGG 1 cut(s) 695
BstZI CGGCCG 1 cut(s) 251
BsuRI GGCC 5 cut(s) 253, 287, 387, 424, 672
BtsCI GGATG 2 cut(s) 328, 918
BtsI GCAGTG 2 cut(s) 339, 798
BtsIMutI CAGTG 2 cut(s) 339, 798
Cac8I GCNNGC 2 cut(s) 422, 670
Cfr10I RCCGGY 1 cut(s) 253
Cfr13I GGNCC 2 cut(s) 285, 671
Cfr9I CCCGGG 1 cut(s) 727
CviAII CATG 3 cut(s) 550, 741, 910
DdeI CTNAG 4 cut(s) 22, 68, 627, 860
EaeI YGGCCR 1 cut(s) 251
EagI CGGCCG 1 cut(s) 251
Eam1104I CTCTTC 2 cut(s) 578, 896
EarI CTCTTC 2 cut(s) 578, 896
EclXI CGGCCG 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 853
Eco31I GGTCTC 1 cut(s) 863
Eco52I CGGCCG 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 410
Eco88I CYCGRG 1 cut(s) 727
EcoT14I CCWWGG 1 cut(s) 853
ErhI CCWWGG 1 cut(s) 853
FaeI CATG 3 cut(s) 553, 744, 913
FaiI YATR 7 cut(s) 143, 551, 572, 742, 776, 867, 911
FalI AAGNNNNNCTT 2 cut(s) 926, 958
FaqI GGGAC 1 cut(s) 155
FatI CATG 3 cut(s) 549, 740, 909
Fnu4HI GCNGC 9 cut(s) 312, 333, 336, 345, 348, 351, 354, 357, 621
FokI GGATG 2 cut(s) 335, 905
Fsp4HI GCNGC 9 cut(s) 312, 333, 336, 345, 348, 351, 354, 357, 621
FspBI CTAG 2 cut(s) 533, 833
GluI GCNGC 9 cut(s) 312, 333, 336, 345, 348, 351, 354, 357, 621
GsaI CCCAGC 1 cut(s) 828
HaeIII GGCC 5 cut(s) 253, 287, 387, 424, 672
HapII CCGG 4 cut(s) 254, 318, 461, 728
Hin1II CATG 3 cut(s) 553, 744, 913
HindIII AAGCTT 2 cut(s) 146, 183
HinfI GANTC 4 cut(s) 49, 138, 362, 928
HpaII CCGG 4 cut(s) 254, 318, 461, 728
HphI GGTGA 3 cut(s) 69, 475, 859
Hpy166II GTNNAC 1 cut(s) 850
Hpy188I TCNGA 5 cut(s) 71, 180, 702, 863, 927
Hpy188III TCNNGA 1 cut(s) 770
Hpy8I GTNNAC 1 cut(s) 850
HpyAV CCTTC 3 cut(s) 574, 646, 932
HpyCH4III ACNGT 2 cut(s) 529, 645
HpyCH4IV ACGT 1 cut(s) 905
HpyCH4V TGCA 5 cut(s) 332, 446, 505, 593, 623
HpyF3I CTNAG 4 cut(s) 22, 68, 627, 860
HpySE526I ACGT 1 cut(s) 905
Hsp92II CATG 3 cut(s) 553, 744, 913
LmnI GCTCC 3 cut(s) 737, 749, 915
Lsp1109I GCAGC 9 cut(s) 298, 322, 331, 334, 337, 340, 343, 344, 607
LweI GCATC 6 cut(s) 35, 313, 602, 632, 693, 927
MaeI CTAG 2 cut(s) 533, 833
MaeII ACGT 1 cut(s) 905
MaeIII GTNAC 2 cut(s) 7, 874
MboII GAAGA 5 cut(s) 195, 233, 403, 595, 883
MhlI GDGCHC 1 cut(s) 564
MluCI AATT 5 cut(s) 44, 237, 260, 802, 838
MlyI GAGTC 1 cut(s) 132
MseI TTAA 3 cut(s) 35, 933, 944
MspA1I CMGCKG 1 cut(s) 335
MspCI CTTAAG 2 cut(s) 932, 943
MspI CCGG 4 cut(s) 254, 318, 461, 728
MspR9I CCNGG 3 cut(s) 319, 728, 729
NciI CCSGG 3 cut(s) 319, 728, 729
NlaIII CATG 3 cut(s) 553, 744, 913
NlaIV GGNNCC 2 cut(s) 555, 751
PfeI GAWTC 3 cut(s) 49, 362, 928
PkrI GCNGC 9 cut(s) 313, 334, 337, 346, 349, 352, 355, 358, 622
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
PspFI CCCAGC 1 cut(s) 824
PspN4I GGNNCC 2 cut(s) 555, 751
PspPI GGNCC 2 cut(s) 285, 671
PvuII CAGCTG 1 cut(s) 335
SaqAI TTAA 3 cut(s) 35, 933, 944
SatI GCNGC 9 cut(s) 312, 333, 336, 345, 348, 351, 354, 357, 621
Sau96I GGNCC 2 cut(s) 285, 671
SchI GAGTC 1 cut(s) 132
ScrFI CCNGG 3 cut(s) 319, 728, 729
SduI GDGCHC 1 cut(s) 564
SfaNI GCATC 6 cut(s) 35, 313, 602, 632, 693, 927
SfcI CTRYAG 1 cut(s) 675
SmaI CCCGGG 1 cut(s) 729
SmlI CTYRAG 3 cut(s) 509, 932, 943
SmoI CTYRAG 3 cut(s) 509, 932, 943
Sse9I AATT 5 cut(s) 44, 237, 260, 802, 838
SsiI CCGC 1 cut(s) 798
SspMI CTAG 2 cut(s) 533, 833
StyD4I CCNGG 3 cut(s) 317, 726, 727
StyI CCWWGG 1 cut(s) 853
TaaI ACNGT 2 cut(s) 529, 645
TaiI ACGT 1 cut(s) 908
TaqI TCGA 1 cut(s) 365
TasI AATT 5 cut(s) 44, 237, 260, 802, 838
TfiI GAWTC 3 cut(s) 49, 362, 928
Tru1I TTAA 3 cut(s) 35, 933, 944
Tru9I TTAA 3 cut(s) 35, 933, 944
TscAI CASTG 2 cut(s) 346, 798
TseI GCWGC 9 cut(s) 311, 332, 335, 344, 347, 350, 353, 356, 620
TspDTI ATGAA 2 cut(s) 556, 898
TspMI CCCGGG 1 cut(s) 727
TspRI CASTG 2 cut(s) 346, 798
Vha464I CTTAAG 2 cut(s) 932, 943
XapI RAATTY 3 cut(s) 260, 802, 838
XmaI CCCGGG 1 cut(s) 727
XspI CTAG 2 cut(s) 533, 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.