Rorug04G0327700

Putative small multi-drug export protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0011202
Physical Location & Seq
Reverse (-)
50274462 .. 50275622
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0327700.1

Sequence Viewer

Length: 1161 bp
ATGACGACGAACCAAAATAGGAGGAGGATGCCAACTACAACGACAAACTGGTGCGATCTCCCATTAGAACTGTTAGAGCTGATCTCGAAGAAGCTTGCTTTCATCGACATAGTTCGATTCAAATCCGTCTGTTCTTGTTGGAAAAGCGCTGCAGAATCTTATACCTCTTCACCAAATTATACACCTGCGCCTGAAGCTCCGTGGCTCATGGTCTCTCTCCCTGCTGATCATCAACGAGTACAGACTGGTGATAAGGATGCTCACTACTTCTGGTTCTTTAGCCTCACAGAGAAAAAGTTTCGTAAGATCAAGACCTCTTTTGAAGGCTTTGATTATCCTCACGTAACATATGCGGGTTCCTCACACGGATGGCTTGCGATTTGCGACTTCAACAAGGCAATGGTTTATCTTCTCAATCCGTTTTCGGGATCTAGAATCGATCTCCCATCGATTTCGACTCTTCCTAACATTGTTGAAGGATGCAATCCCAGAGTTTGCCGAGTTGTGGCCTCCTCCGACCCGTCTCGCAACAAGAAATTTTTTGTTGTGGTGAAGTACGTTAGTAGAATATTGTCTCCTCACAGTAAACTAGCTTTTTGTAAGAATGGAGATGAAAAATGGACCTATTTAGGCGGTGGTCGGCTATGTTTTACATTCCACAAAGGCCATTTATATGTATTACGCAAGGAAACCCTTGAGGTTTGGGACTTGGGAGGAACTTATCCCATGAAAACCGTGGATTTTCGCCATGGATTAGGGCGTGTGGTTACAGGAGTGAATTTCTTGGAGTCAACAGTAGTGAATATGGTGGACTCACTGGGTGAACTTTATTTGTTTGGGAAGAATATTCGCTGCGGTAAGACCATATCAAAGGAGGATTTCCATATCTACAAGTTAAATTTCACCTCCAAGGAGTGGGAGAAAGTGGAATGTTTGAATGATCAAGCTATATTTTGTAATCATTCTGACGGAGTGATGTTATTATCAACTCGGAATCTCCCAGAATTTGAAGAAAACTCAATATACTTCACTGAGTGGCGAAAGGATGAAGTGAGTGGATTACTATTCAGCTTGGAAAGTCAAGTTACTAAGGAGTACTCTAACTTTCGCTGGATGGGTGTTGCTCAACCTTATGTTTGGATTGTTCCTAATCCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sm_multidrug_ex

Protein Analysis

386

Amino Acids

44.47

Weight (kDa)

8.63

Isoelectric Point (pI)

37.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 17 - 53 2.1e-07 F-box domain
Beta-prop_KIB1-4 PF03478 92 - 349 2.1e-43 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02590
fragaria_vesca FvH4_4g32070
malus_domestica MD13G1079600.v1.1 MD16G1079500.v1.1
prunus_persica Prupe.1G267200_v2.0.a1
pyrus_communis pycom13g06930 pycom16g06870
rosa_chinensis RchiOBHm_Chr4g0440761
rosa_laevigata RLG00000006156
rosa_multiflora Rmu_co8415195.1_g000001 Rmu_sc0000424.1_g000005 Rmu_sc0022158.1_g000003
rosa_roxburghii Rroxscaffold_5G00381520
rosa_rugosa Rorug04G0327700
rosa_samantha Rh4AG379500 Rh4BG392400 Rh4CG407100 Rh4DG386200
rosa_wichuraiana Rw4G032640 Rw4G032670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 193
Acc36I ACCTGC 1 cut(s) 193
AccB7I CCANNNNNTGG 1 cut(s) 915
AciI CCGC 3 cut(s) 353, 633, 855
AclWI GGATC 1 cut(s) 436
AcsI RAATTY 4 cut(s) 536, 778, 898, 1004
AcuI CTGAAG 1 cut(s) 213
AdeI CACNNNGTG 2 cut(s) 821, 1035
AfaI GTAC 3 cut(s) 240, 557, 1097
AfeI AGCGCT 1 cut(s) 148
AfiI CCNNNNNNNGG 3 cut(s) 425, 505, 915
AgsI TTSAA 6 cut(s) 121, 323, 391, 476, 937, 1010
AluBI AGCT 6 cut(s) 79, 94, 197, 593, 947, 1071
AluI AGCT 6 cut(s) 79, 94, 197, 593, 947, 1071
Alw26I GTCTC 3 cut(s) 217, 528, 579
AlwI GGATC 1 cut(s) 436
Aor51HI AGCGCT 1 cut(s) 148
AoxI GGCC 2 cut(s) 507, 664
ApeKI GCWGC 2 cut(s) 149, 852
ApoI RAATTY 4 cut(s) 536, 778, 898, 1004
AspLEI GCGC 2 cut(s) 149, 190
AspS9I GGNCC 1 cut(s) 621
AsuHPI GGTGA 5 cut(s) 162, 260, 562, 833, 895
AvaII GGWCC 1 cut(s) 621
BbvI GCAGC 2 cut(s) 136, 839
BccI CCATC 3 cut(s) 363, 454, 1108
BclI TGATCA 2 cut(s) 226, 940
BcoDI GTCTC 3 cut(s) 217, 528, 579
BfaI CTAG 2 cut(s) 432, 590
BfmI CTRYAG 1 cut(s) 150
BfoI RGCGCY 1 cut(s) 150
BfuAI ACCTGC 1 cut(s) 193
BisI GCNGC 2 cut(s) 150, 853
BlsI GCNGC 2 cut(s) 151, 854
BmcAI AGTACT 1 cut(s) 1097
Bme18I GGWCC 1 cut(s) 621
BmgT120I GGNCC 1 cut(s) 621
BmiI GGNNCC 1 cut(s) 358
BmrI ACTGGG 1 cut(s) 827
BmsI GCATC 3 cut(s) 18, 247, 470
BmuI ACTGGG 1 cut(s) 827
BplI GAGNNNNNCTC 2 cut(s) 68, 100
BpuEI CTTGAG 1 cut(s) 716
Bsa29I ATCGAT 2 cut(s) 438, 449
BsaAI YACGTR 1 cut(s) 343
BsaBI GATNNNNATC 1 cut(s) 121
BsaI GGTCTC 1 cut(s) 217
BsaJI CCNNGG 5 cut(s) 200, 735, 748, 909, 1154
Bsc4I CCNNNNNNNGG 3 cut(s) 425, 505, 915
Bse1I ACTGG 3 cut(s) 53, 250, 822
Bse3DI GCAATG 1 cut(s) 405
Bse8I GATNNNNATC 1 cut(s) 121
BseCI ATCGAT 2 cut(s) 438, 449
BseDI CCNNGG 5 cut(s) 200, 735, 748, 909, 1154
BseGI GGATG 6 cut(s) 33, 262, 374, 485, 1051, 1119
BseJI GATNNNNATC 1 cut(s) 121
BseLI CCNNNNNNNGG 3 cut(s) 425, 505, 915
BseMI GCAATG 1 cut(s) 405
BseMII CTCAG 1 cut(s) 1023
BseNI ACTGG 3 cut(s) 53, 250, 822
BseRI GAGGAG 3 cut(s) 37, 502, 567
BseXI GCAGC 2 cut(s) 136, 839
BshFI GGCC 2 cut(s) 509, 666
BshVI ATCGAT 2 cut(s) 438, 449
BslFI GGGAC 1 cut(s) 719
BslI CCNNNNNNNGG 3 cut(s) 425, 505, 915
BsmAI GTCTC 3 cut(s) 217, 528, 579
BsmBI CGTCTC 1 cut(s) 528
BsmFI GGGAC 1 cut(s) 719
BsnI GGCC 2 cut(s) 509, 666
Bso31I GGTCTC 1 cut(s) 217
Bsp143I GATC 7 cut(s) 55, 81, 226, 306, 428, 439, 940
Bsp19I CCATGG 2 cut(s) 748, 1154
BspACI CCGC 3 cut(s) 353, 633, 855
BspANI GGCC 2 cut(s) 509, 666
BspCNI CTCAG 1 cut(s) 1024
BspDI ATCGAT 2 cut(s) 438, 449
BspLI GGNNCC 1 cut(s) 358
BspMAI CTGCAG 1 cut(s) 154
BspMI ACCTGC 1 cut(s) 193
BspPI GGATC 1 cut(s) 436
BspTNI GGTCTC 1 cut(s) 217
BsrDI GCAATG 1 cut(s) 405
BsrI ACTGG 3 cut(s) 53, 250, 822
BssECI CCNNGG 5 cut(s) 200, 735, 748, 909, 1154
BssMI GATC 7 cut(s) 55, 81, 226, 306, 428, 439, 940
BssT1I CCWWGG 3 cut(s) 748, 909, 1154
Bst4CI ACNGT 4 cut(s) 72, 584, 736, 796
Bst6I CTCTTC 2 cut(s) 172, 465
BstBAI YACGTR 1 cut(s) 343
BstC8I GCNNGC 2 cut(s) 96, 375
BstDEI CTNAG 2 cut(s) 1032, 1089
BstDSI CCRYGG 4 cut(s) 200, 735, 748, 1154
BstF5I GGATG 6 cut(s) 33, 262, 374, 485, 1051, 1119
BstH2I RGCGCY 1 cut(s) 150
BstHHI GCGC 2 cut(s) 149, 190
BstKTI GATC 7 cut(s) 58, 84, 229, 309, 431, 442, 943
BstMAI GTCTC 3 cut(s) 217, 528, 579
BstMBI GATC 7 cut(s) 55, 81, 226, 306, 428, 439, 940
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 136, 839
BstX2I RGATCY 1 cut(s) 428
BstYI RGATCY 1 cut(s) 428
Bsu15I ATCGAT 2 cut(s) 438, 449
BsuRI GGCC 2 cut(s) 509, 666
BsuTUI ATCGAT 2 cut(s) 438, 449
BtgI CCRYGG 4 cut(s) 200, 735, 748, 1154
BtsCI GGATG 6 cut(s) 33, 262, 374, 485, 1051, 1119
BtsIMutI CAGTG 2 cut(s) 815, 1029
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 2 cut(s) 96, 375
CfoI GCGC 2 cut(s) 149, 190
Cfr13I GGNCC 1 cut(s) 621
ClaI ATCGAT 2 cut(s) 438, 449
Csp6I GTAC 3 cut(s) 239, 556, 1096
CviAII CATG 4 cut(s) 208, 727, 749, 1155
CviQI GTAC 3 cut(s) 239, 556, 1096
DdeI CTNAG 2 cut(s) 1032, 1089
DpnI GATC 7 cut(s) 57, 83, 228, 308, 430, 441, 942
DpnII GATC 7 cut(s) 55, 81, 226, 306, 428, 439, 940
DraIII CACNNNGTG 2 cut(s) 821, 1035
Eam1104I CTCTTC 2 cut(s) 172, 465
EarI CTCTTC 2 cut(s) 172, 465
Eco130I CCWWGG 3 cut(s) 748, 909, 1154
Eco31I GGTCTC 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 621
Eco47III AGCGCT 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 213
EcoT14I CCWWGG 3 cut(s) 748, 909, 1154
ErhI CCWWGG 3 cut(s) 748, 909, 1154
Esp3I CGTCTC 1 cut(s) 528
FaeI CATG 4 cut(s) 211, 730, 752, 1158
FaqI GGGAC 1 cut(s) 719
FatI CATG 4 cut(s) 207, 726, 748, 1154
FauI CCCGC 1 cut(s) 346
FauNDI CATATG 1 cut(s) 349
FbaI TGATCA 2 cut(s) 226, 940
Fnu4HI GCNGC 2 cut(s) 150, 853
FokI GGATG 6 cut(s) 40, 269, 381, 492, 1058, 1126
Fsp4HI GCNGC 2 cut(s) 150, 853
FspBI CTAG 2 cut(s) 432, 590
GlaI GCGC 2 cut(s) 148, 189
GluI GCNGC 2 cut(s) 150, 853
HaeII RGCGCY 1 cut(s) 150
HaeIII GGCC 2 cut(s) 509, 666
HhaI GCGC 2 cut(s) 149, 190
Hin1II CATG 4 cut(s) 211, 730, 752, 1158
Hin6I GCGC 2 cut(s) 147, 188
HinP1I GCGC 2 cut(s) 147, 188
HincII GTYRAC 1 cut(s) 792
HindII GTYRAC 1 cut(s) 792
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 7 cut(s) 117, 155, 435, 457, 788, 812, 994
HphI GGTGA 5 cut(s) 162, 260, 562, 833, 895
Hpy166II GTNNAC 4 cut(s) 587, 792, 811, 824
Hpy188I TCNGA 3 cut(s) 517, 967, 993
Hpy188III TCNNGA 4 cut(s) 85, 310, 426, 432
Hpy8I GTNNAC 4 cut(s) 587, 792, 811, 824
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 317, 470
HpyCH4III ACNGT 4 cut(s) 72, 584, 736, 796
HpyCH4IV ACGT 2 cut(s) 342, 558
HpyCH4V TGCA 2 cut(s) 152, 483
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 2 cut(s) 1032, 1089
HpySE526I ACGT 2 cut(s) 342, 558
Hsp92II CATG 4 cut(s) 211, 730, 752, 1158
HspAI GCGC 2 cut(s) 147, 188
Ksp22I TGATCA 2 cut(s) 226, 940
Kzo9I GATC 7 cut(s) 55, 81, 226, 306, 428, 439, 940
LmnI GCTCC 1 cut(s) 202
Lsp1109I GCAGC 2 cut(s) 136, 839
LweI GCATC 3 cut(s) 18, 247, 470
MaeI CTAG 2 cut(s) 432, 590
MaeII ACGT 2 cut(s) 342, 558
MaeIII GTNAC 3 cut(s) 343, 766, 1084
MalI GATC 7 cut(s) 57, 83, 228, 308, 430, 441, 942
MboI GATC 7 cut(s) 55, 81, 226, 306, 428, 439, 940
MboII GAAGA 6 cut(s) 100, 159, 401, 452, 853, 1022
MflI RGATCY 1 cut(s) 428
MluCI AATT 5 cut(s) 175, 536, 778, 898, 1004
MlyI GAGTC 3 cut(s) 451, 797, 806
MmeI TCCRAC 2 cut(s) 119, 540
MseI TTAA 1 cut(s) 896
MslI CAYNNNNRTG 2 cut(s) 367, 672
MwoI GCNNNNNNNGC 1 cut(s) 194
NcoI CCATGG 2 cut(s) 748, 1154
NdeI CATATG 1 cut(s) 349
NdeII GATC 7 cut(s) 55, 81, 226, 306, 428, 439, 940
NlaIII CATG 4 cut(s) 211, 730, 752, 1158
NlaIV GGNNCC 1 cut(s) 358
NmeAIII GCCGAG 1 cut(s) 524
PaqCI CACCTGC 1 cut(s) 193
PfeI GAWTC 4 cut(s) 117, 155, 435, 994
PflMI CCANNNNNTGG 1 cut(s) 915
PkrI GCNGC 2 cut(s) 151, 854
PleI GAGTC 3 cut(s) 451, 796, 806
PpsI GAGTC 3 cut(s) 451, 796, 806
Ppu21I YACGTR 1 cut(s) 343
PspN4I GGNNCC 1 cut(s) 358
PspPI GGNCC 1 cut(s) 621
PstI CTGCAG 1 cut(s) 154
PsuI RGATCY 1 cut(s) 428
RsaI GTAC 3 cut(s) 240, 557, 1097
RsaNI GTAC 3 cut(s) 239, 556, 1096
RseI CAYNNNNRTG 2 cut(s) 367, 672
SaqAI TTAA 1 cut(s) 896
SatI GCNGC 2 cut(s) 150, 853
Sau3AI GATC 7 cut(s) 55, 81, 226, 306, 428, 439, 940
Sau96I GGNCC 1 cut(s) 621
ScaI AGTACT 1 cut(s) 1097
SchI GAGTC 3 cut(s) 451, 797, 806
SfaNI GCATC 3 cut(s) 18, 247, 470
SfcI CTRYAG 1 cut(s) 150
SinI GGWCC 1 cut(s) 621
SmiMI CAYNNNNRTG 2 cut(s) 367, 672
SmlI CTYRAG 1 cut(s) 695
SmoI CTYRAG 1 cut(s) 695
Sse9I AATT 5 cut(s) 175, 536, 778, 898, 1004
SsiI CCGC 3 cut(s) 353, 633, 855
SspI AATATT 2 cut(s) 570, 847
SspMI CTAG 2 cut(s) 432, 590
StyI CCWWGG 3 cut(s) 748, 909, 1154
TaaI ACNGT 4 cut(s) 72, 584, 736, 796
TaiI ACGT 2 cut(s) 345, 561
TaqI TCGA 6 cut(s) 86, 105, 115, 438, 449, 455
TasI AATT 5 cut(s) 175, 536, 778, 898, 1004
TatI WGTACW 2 cut(s) 238, 1095
TfiI GAWTC 4 cut(s) 117, 155, 435, 994
Tru1I TTAA 1 cut(s) 896
Tru9I TTAA 1 cut(s) 896
TscAI CASTG 2 cut(s) 822, 1036
TseI GCWGC 2 cut(s) 149, 852
TspDTI ATGAA 4 cut(s) 91, 627, 743, 1062
TspGWI ACGGA 5 cut(s) 115, 189, 381, 408, 984
TspRI CASTG 2 cut(s) 822, 1036
Van91I CCANNNNNTGG 1 cut(s) 915
VpaK11BI GGWCC 1 cut(s) 621
XapI RAATTY 4 cut(s) 536, 778, 898, 1004
XbaI TCTAGA 1 cut(s) 431
XcmI CCANNNNNNNNNTGG 1 cut(s) 733
XspI CTAG 2 cut(s) 432, 590
ZrmI AGTACT 1 cut(s) 1097
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.