MD16G1079500.v1.1

Putative small multi-drug export protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0011202
Physical Location & Seq
Reverse (-)
5586114 .. 5587847
1734 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1079500.v1.1.491

Sequence Viewer

Length: 972 bp
ATGGCTGCATCTCTATCAGCATCCCCATCGCCATTGACGTCAATTTTGTCTCTCAGAAAAGCCCACTTCGTATTTTCACCAAAAATTGGCCGCCCAATCATTACCCGGATCAAACAACCCCCTTTCAGCCCCAATGCAGACTTTAAGTTTCAAACTTTGCCCAAATCAAATCCCTTTTTTGCGATTTCACCCCTCGCTCGCGCTGCAACGGGAGTTTCCTCACGTGGGTTTCCTGAAACAGACGAGGAAGATGAACTTTTGCCGTTGTTTGAGGAGCGGCCGGTCAAATTTGCCTTCTGGGTTTTGATCTGGGCATCTGTGTCGCTTGCCTGGTTCGCGGCTTCCGGGGATGCAAATGCTGCTGCTGCGGCGGCGGCTGATTCCATTAGAGCCTCCAACTTTGGCTTGAAGATTGCGACGGTGCTTCGAAGCTCCGGCTGGCCTGATGAGGCTGTGGTGTTTGCTCTTGCCACACTTCCGGTCATTGAGCTTCGTGGGGCTATTCCTGTTGGTTACTGGTTGCAACTTAAGCCTGTTCTGCTAACAGTTCTATCCGTTCTTGGGAACATGGTTCCTGTGCCCTTCATCATACTTTACTTGAAGAGGTTTGCATCGTTCCTTGCTGGAAAGAACAAGGCCGCAGCTCAGTTCCTTAACTTGCTATTTGTGAGGGCTAAAGAGAAGGCTGGCCCCGTAGAGGAGTTCCAGTGGCTTGGTCTGATGCTTTTTGTGGCTGTGCCTTTCCCCGGAACAGGAGCATGGACAGGGGCCATCATAGCTTCAATTCTCGACATGCCATTCTGGTCAGCATTGTCTGCAAATTTCTTTGGTGTTGTACTGGCCGGGCTTCTGGTAAACTTGCTGGTGAACCTTGGCCTCAAATACGCAATTGTTTCTGGTATTGTCCTCTTCTTTATTTCCACATTCATGTGGACCATCCTCCGCTATCTTAAGAAGTCTTTTCGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sm_multidrug_ex

Protein Analysis

324

Amino Acids

35.13

Weight (kDa)

9.99

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sm_multidrug_ex PF06695 163 - 283 9.9e-38 Putative small multi-drug export protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02590
fragaria_vesca FvH4_4g32070
malus_domestica MD13G1079600.v1.1 MD16G1079500.v1.1
prunus_persica Prupe.1G267200_v2.0.a1
pyrus_communis pycom13g06930 pycom16g06870
rosa_chinensis RchiOBHm_Chr4g0440761
rosa_laevigata RLG00000006156
rosa_multiflora Rmu_co8415195.1_g000001 Rmu_sc0000424.1_g000005 Rmu_sc0022158.1_g000003
rosa_roxburghii Rroxscaffold_5G00381520
rosa_rugosa Rorug04G0327700
rosa_samantha Rh4AG379500 Rh4BG392400 Rh4CG407100 Rh4DG386200
rosa_wichuraiana Rw4G032640 Rw4G032670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 41
AccB7I CCANNNNNTGG 1 cut(s) 86
AccBSI CCGCTC 1 cut(s) 277
AccII CGCG 2 cut(s) 201, 338
AciI CCGC 8 cut(s) 91, 277, 338, 368, 371, 374, 639, 943
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 3 cut(s) 88, 278, 840
AcsI RAATTY 2 cut(s) 287, 820
AcvI CACGTG 1 cut(s) 224
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 1 cut(s) 837
AfiI CCNNNNNNNGG 6 cut(s) 86, 225, 561, 697, 746, 752
AflII CTTAAG 2 cut(s) 527, 950
AgsI TTSAA 4 cut(s) 152, 409, 601, 783
AjnI CCWGG 1 cut(s) 329
AluBI AGCT 4 cut(s) 432, 490, 644, 779
AluI AGCT 4 cut(s) 432, 490, 644, 779
Alw26I GTCTC 1 cut(s) 54
AlwI GGATC 1 cut(s) 116
AoxI GGCC 8 cut(s) 88, 278, 440, 636, 688, 768, 840, 874
ApeKI GCWGC 6 cut(s) 5, 203, 359, 362, 365, 641
ApoI RAATTY 2 cut(s) 287, 820
ArsI GACNNNNNNTTYG 2 cut(s) 28, 60
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 3 cut(s) 689, 768, 933
AsuC2I CCSGG 4 cut(s) 106, 346, 747, 844
AsuHPI GGTGA 3 cut(s) 69, 180, 877
AsuII TTCGAA 1 cut(s) 427
AvaII GGWCC 1 cut(s) 933
BaeGI GKGCMC 1 cut(s) 582
BbrPI CACGTG 1 cut(s) 224
BbvI GCAGC 5 cut(s) 190, 346, 349, 352, 653
BccI CCATC 3 cut(s) 34, 779, 944
BceAI ACGGC 1 cut(s) 247
BcgI CGANNNNNNTGC 4 cut(s) 9, 43, 303, 337
BciT130I CCWGG 1 cut(s) 331
BcnI CCSGG 4 cut(s) 106, 346, 747, 844
BcoDI GTCTC 1 cut(s) 54
BfrI CTTAAG 2 cut(s) 527, 950
Bme1390I CCNGG 5 cut(s) 106, 331, 346, 747, 844
Bme18I GGWCC 1 cut(s) 933
BmgT120I GGNCC 3 cut(s) 689, 768, 933
BmiI GGNNCC 3 cut(s) 573, 691, 769
BmrFI CCNGG 5 cut(s) 106, 331, 346, 747, 844
BmsI GCATC 6 cut(s) 17, 29, 323, 340, 620, 711
Bpu14I TTCGAA 1 cut(s) 427
BpuMI CCSGG 4 cut(s) 106, 346, 747, 844
BsaAI YACGTR 1 cut(s) 224
BsaHI GRCGYC 1 cut(s) 38
BsaJI CCNNGG 3 cut(s) 345, 745, 871
BsaWI WCCGGW 1 cut(s) 478
BsaXI ACNNNNNCTCC 2 cut(s) 692, 722
Bsc4I CCNNNNNNNGG 6 cut(s) 86, 225, 561, 697, 746, 752
Bse118I RCCGGY 1 cut(s) 280
Bse1I ACTGG 3 cut(s) 521, 706, 843
BseBI CCWGG 1 cut(s) 331
BseDI CCNNGG 3 cut(s) 345, 745, 871
BseGI GGATG 3 cut(s) 20, 355, 936
BseLI CCNNNNNNNGG 6 cut(s) 86, 225, 561, 697, 746, 752
BseMII CTCAG 2 cut(s) 67, 659
BseNI ACTGG 3 cut(s) 521, 706, 843
BseRI GAGGAG 2 cut(s) 287, 713
BseSI GKGCMC 1 cut(s) 582
BseX3I CGGCCG 1 cut(s) 278
BseXI GCAGC 5 cut(s) 190, 346, 349, 352, 653
Bsh1236I CGCG 2 cut(s) 201, 338
Bsh1285I CGRYCG 1 cut(s) 281
BshFI GGCC 8 cut(s) 90, 280, 442, 638, 690, 770, 842, 876
BsiEI CGRYCG 1 cut(s) 281
BsiSI CCGG 7 cut(s) 106, 281, 345, 435, 479, 747, 843
BslI CCNNNNNNNGG 6 cut(s) 86, 225, 561, 697, 746, 752
BsmAI GTCTC 1 cut(s) 54
BsnI GGCC 8 cut(s) 90, 280, 442, 638, 690, 770, 842, 876
Bsp119I TTCGAA 1 cut(s) 427
Bsp1286I GDGCHC 1 cut(s) 582
Bsp143I GATC 2 cut(s) 108, 306
BspACI CCGC 8 cut(s) 91, 277, 338, 368, 371, 374, 639, 943
BspANI GGCC 8 cut(s) 90, 280, 442, 638, 690, 770, 842, 876
BspCNI CTCAG 2 cut(s) 66, 658
BspFNI CGCG 2 cut(s) 201, 338
BspHI TCATGA 1 cut(s) 968
BspLI GGNNCC 3 cut(s) 573, 691, 769
BspPI GGATC 1 cut(s) 116
BspT104I TTCGAA 1 cut(s) 427
BspTI CTTAAG 2 cut(s) 527, 950
BsrBI CCGCTC 1 cut(s) 277
BsrFI RCCGGY 1 cut(s) 280
BsrI ACTGG 3 cut(s) 521, 706, 843
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 3 cut(s) 345, 745, 871
BssMI GATC 2 cut(s) 108, 306
BssNI GRCGYC 1 cut(s) 38
BssT1I CCWWGG 1 cut(s) 871
Bst2UI CCWGG 1 cut(s) 331
Bst4CI ACNGT 2 cut(s) 421, 547
Bst6I CTCTTC 2 cut(s) 596, 914
BstACI GRCGYC 1 cut(s) 38
BstAFI CTTAAG 2 cut(s) 527, 950
BstAPI GCANNNNNTGC 2 cut(s) 359, 815
BstBAI YACGTR 1 cut(s) 224
BstBI TTCGAA 1 cut(s) 427
BstC8I GCNNGC 4 cut(s) 199, 327, 440, 688
BstDEI CTNAG 2 cut(s) 53, 645
BstF5I GGATG 3 cut(s) 20, 355, 936
BstFNI CGCG 2 cut(s) 201, 338
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 2 cut(s) 111, 309
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 2 cut(s) 108, 306
BstMCI CGRYCG 1 cut(s) 281
BstNI CCWGG 1 cut(s) 331
BstNSI RCATGY 1 cut(s) 796
BstSCI CCNGG 5 cut(s) 104, 329, 344, 745, 842
BstSLI GKGCMC 1 cut(s) 582
BstUI CGCG 2 cut(s) 201, 338
BstV1I GCAGC 5 cut(s) 190, 346, 349, 352, 653
BstXI CCANNNNNNTGG 1 cut(s) 713
BstZI CGGCCG 1 cut(s) 278
BsuRI GGCC 8 cut(s) 90, 280, 442, 638, 690, 770, 842, 876
BtgZI GCGATG 1 cut(s) 12
BtsCI GGATG 3 cut(s) 20, 355, 936
BtsIMutI CAGTG 1 cut(s) 713
Cac8I GCNNGC 4 cut(s) 199, 327, 440, 688
CciI TCATGA 1 cut(s) 968
CfoI GCGC 1 cut(s) 203
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 3 cut(s) 689, 768, 933
Csp6I GTAC 1 cut(s) 836
CviAII CATG 5 cut(s) 568, 759, 793, 928, 969
CviQI GTAC 1 cut(s) 836
DdeI CTNAG 2 cut(s) 53, 645
DpnI GATC 2 cut(s) 110, 308
DpnII GATC 2 cut(s) 108, 306
EaeI YGGCCR 3 cut(s) 88, 278, 840
EagI CGGCCG 1 cut(s) 278
Eam1104I CTCTTC 2 cut(s) 596, 914
EarI CTCTTC 2 cut(s) 596, 914
EclXI CGGCCG 1 cut(s) 278
Eco130I CCWWGG 1 cut(s) 871
Eco47I GGWCC 1 cut(s) 933
Eco52I CGGCCG 1 cut(s) 278
Eco72I CACGTG 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 329
EcoT14I CCWWGG 1 cut(s) 871
ErhI CCWWGG 1 cut(s) 871
FaeI CATG 5 cut(s) 571, 762, 796, 931, 972
FaiI YATR 7 cut(s) 569, 590, 760, 776, 794, 929, 970
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FatI CATG 5 cut(s) 567, 758, 792, 927, 968
FokI GGATG 3 cut(s) 7, 362, 923
GlaI GCGC 1 cut(s) 202
HaeIII GGCC 8 cut(s) 90, 280, 442, 638, 690, 770, 842, 876
HapII CCGG 7 cut(s) 106, 281, 345, 435, 479, 747, 843
HhaI GCGC 1 cut(s) 203
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 5 cut(s) 571, 762, 796, 931, 972
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HinfI GANTC 1 cut(s) 380
HpaII CCGG 7 cut(s) 106, 281, 345, 435, 479, 747, 843
HphI GGTGA 3 cut(s) 69, 180, 877
Hpy166II GTNNAC 3 cut(s) 856, 868, 933
Hpy188I TCNGA 2 cut(s) 56, 720
Hpy188III TCNNGA 3 cut(s) 233, 788, 969
Hpy8I GTNNAC 3 cut(s) 856, 868, 933
Hpy99I CGWCG 1 cut(s) 421
HpyAV CCTTC 3 cut(s) 304, 592, 676
HpyCH4III ACNGT 2 cut(s) 421, 547
HpyCH4IV ACGT 2 cut(s) 38, 223
HpyCH4V TGCA 7 cut(s) 8, 137, 206, 353, 523, 611, 818
HpyF3I CTNAG 2 cut(s) 53, 645
HpySE526I ACGT 2 cut(s) 38, 223
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 5 cut(s) 571, 762, 796, 931, 972
HspAI GCGC 1 cut(s) 201
Kzo9I GATC 2 cut(s) 108, 306
LmnI GCTCC 3 cut(s) 274, 437, 755
Lsp1109I GCAGC 5 cut(s) 190, 346, 349, 352, 653
LweI GCATC 6 cut(s) 17, 29, 323, 340, 620, 711
MaeII ACGT 2 cut(s) 38, 223
MaeIII GTNAC 1 cut(s) 512
MalI GATC 2 cut(s) 110, 308
MbiI CCGCTC 1 cut(s) 277
MboI GATC 2 cut(s) 108, 306
MboII GAAGA 4 cut(s) 260, 421, 613, 901
MfeI CAATTG 1 cut(s) 888
MhlI GDGCHC 1 cut(s) 582
MluCI AATT 6 cut(s) 42, 84, 287, 783, 820, 888
MmeI TCCRAC 1 cut(s) 420
MseI TTAA 4 cut(s) 144, 528, 654, 951
MslI CAYNNNNRTG 2 cut(s) 926, 928
MspCI CTTAAG 2 cut(s) 527, 950
MspI CCGG 7 cut(s) 106, 281, 345, 435, 479, 747, 843
MspR9I CCNGG 5 cut(s) 106, 331, 346, 747, 844
MunI CAATTG 1 cut(s) 888
MvaI CCWGG 1 cut(s) 331
MvnI CGCG 2 cut(s) 201, 338
NciI CCSGG 4 cut(s) 106, 346, 747, 844
NdeII GATC 2 cut(s) 108, 306
NlaIII CATG 5 cut(s) 571, 762, 796, 931, 972
NlaIV GGNNCC 3 cut(s) 573, 691, 769
NspI RCATGY 1 cut(s) 796
NspV TTCGAA 1 cut(s) 427
PagI TCATGA 1 cut(s) 968
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PfeI GAWTC 1 cut(s) 380
PflMI CCANNNNNTGG 1 cut(s) 86
PmaCI CACGTG 1 cut(s) 224
PmlI CACGTG 1 cut(s) 224
Ppu21I YACGTR 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 329
PspCI CACGTG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 329
PspN4I GGNNCC 3 cut(s) 573, 691, 769
PspPI GGNCC 3 cut(s) 689, 768, 933
RsaI GTAC 1 cut(s) 837
RsaNI GTAC 1 cut(s) 836
RseI CAYNNNNRTG 2 cut(s) 926, 928
SaqAI TTAA 4 cut(s) 144, 528, 654, 951
Sau3AI GATC 2 cut(s) 108, 306
Sau96I GGNCC 3 cut(s) 689, 768, 933
ScrFI CCNGG 5 cut(s) 106, 331, 346, 747, 844
SduI GDGCHC 1 cut(s) 582
SetI ASST 8 cut(s) 41, 226, 434, 492, 608, 646, 781, 873
SfaNI GCATC 6 cut(s) 17, 29, 323, 340, 620, 711
SfuI TTCGAA 1 cut(s) 427
SinI GGWCC 1 cut(s) 933
SmiMI CAYNNNNRTG 2 cut(s) 926, 928
SmlI CTYRAG 2 cut(s) 527, 950
SmoI CTYRAG 2 cut(s) 527, 950
Sse9I AATT 6 cut(s) 42, 84, 287, 783, 820, 888
SsiI CCGC 8 cut(s) 91, 277, 338, 368, 371, 374, 639, 943
StyD4I CCNGG 5 cut(s) 104, 329, 344, 745, 842
StyI CCWWGG 1 cut(s) 871
TaaI ACNGT 2 cut(s) 421, 547
TaiI ACGT 2 cut(s) 41, 226
TaqI TCGA 2 cut(s) 427, 789
TasI AATT 6 cut(s) 42, 84, 287, 783, 820, 888
TatI WGTACW 1 cut(s) 835
TauI GCSGC 7 cut(s) 93, 280, 341, 371, 374, 377, 641
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 4 cut(s) 144, 528, 654, 951
Tru9I TTAA 4 cut(s) 144, 528, 654, 951
TscAI CASTG 1 cut(s) 713
TseI GCWGC 6 cut(s) 5, 203, 359, 362, 365, 641
TspDTI ATGAA 4 cut(s) 267, 574, 916, 957
TspGWI ACGGA 1 cut(s) 544
TspRI CASTG 1 cut(s) 713
Van91I CCANNNNNTGG 1 cut(s) 86
Vha464I CTTAAG 2 cut(s) 527, 950
VpaK11BI GGWCC 1 cut(s) 933
XapI RAATTY 2 cut(s) 287, 820
XceI RCATGY 1 cut(s) 796
ZraI GACGTC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.