Rmu_sc0022158.1_g000003

Putative small multi-drug export protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022158.1
OG0011202
Physical Location & Seq
Forward (+)
8748 .. 9185
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022158.1_g000003.1.cds

Sequence Viewer

Length: 438 bp
atgtctgggactatgatctgcaggaacatggttcctgtgcccttcatcatactttacttgaagagatttgcatctttccttgctggaaagaataaagctgcatctcagttccttgacttattgtttgagaaggctaaaaagaaagctggccctgtagaggagttccaatggcttggtctgatgctgtttgtggctgtgcctttcccgggaacaggagcatggacaggagccattgtagcttctattcttgatatgccattttggtcagcagtgtccgcaaatttctttggtgttgtgttggctgggcttctagtgaatttgctggtgaaccttggtctcagatatgctattgttactggtattgttcttttctttatctctacgttcatgtggagcatccttcggaatcttaagaagtccttaagctcatcaacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sm_multidrug_ex

Protein Analysis

145

Amino Acids

15.92

Weight (kDa)

10.08

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02590
fragaria_vesca FvH4_4g32070
malus_domestica MD13G1079600.v1.1 MD16G1079500.v1.1
prunus_persica Prupe.1G267200_v2.0.a1
pyrus_communis pycom13g06930 pycom16g06870
rosa_chinensis RchiOBHm_Chr4g0440761
rosa_laevigata RLG00000006156
rosa_multiflora Rmu_co8415195.1_g000001 Rmu_sc0000424.1_g000005 Rmu_sc0022158.1_g000003
rosa_roxburghii Rroxscaffold_5G00381520
rosa_rugosa Rorug04G0327700
rosa_samantha Rh4AG379500 Rh4BG392400 Rh4CG407100 Rh4DG386200
rosa_wichuraiana Rw4G032640 Rw4G032670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 276
AcsI RAATTY 2 cut(s) 280, 316
AfiI CCNNNNNNNGG 3 cut(s) 157, 206, 212
AflII CTTAAG 2 cut(s) 410, 421
AgsI TTSAA 1 cut(s) 61
AluBI AGCT 4 cut(s) 98, 146, 239, 426
AluI AGCT 4 cut(s) 98, 146, 239, 426
Alw26I GTCTC 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 205
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 2 cut(s) 280, 316
ArsI GACNNNNNNTTYG 2 cut(s) 107, 139
AspS9I GGNCC 1 cut(s) 149
AsuC2I CCSGG 2 cut(s) 206, 207
AsuHPI GGTGA 1 cut(s) 337
AvaI CYCGRG 1 cut(s) 205
BaeGI GKGCMC 1 cut(s) 42
BbvI GCAGC 1 cut(s) 85
BcnI CCSGG 2 cut(s) 206, 207
BcoDI GTCTC 1 cut(s) 341
BfaI CTAG 1 cut(s) 311
BfmI CTRYAG 2 cut(s) 19, 153
BfrI CTTAAG 2 cut(s) 410, 421
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme1390I CCNGG 2 cut(s) 206, 207
BmeT110I CYCGRG 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 2 cut(s) 33, 229
BmrFI CCNGG 2 cut(s) 206, 207
BmsI GCATC 4 cut(s) 80, 110, 171, 405
BpuMI CCSGG 2 cut(s) 206, 207
BsaBI GATNNNNATC 1 cut(s) 70
BsaI GGTCTC 1 cut(s) 341
BsaJI CCNNGG 2 cut(s) 205, 331
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bsc4I CCNNNNNNNGG 3 cut(s) 157, 206, 212
Bse1I ACTGG 1 cut(s) 361
Bse8I GATNNNNATC 1 cut(s) 70
BseDI CCNNGG 2 cut(s) 205, 331
BseGI GGATG 1 cut(s) 396
BseJI GATNNNNATC 1 cut(s) 70
BseLI CCNNNNNNNGG 3 cut(s) 157, 206, 212
BseMII CTCAG 2 cut(s) 119, 352
BseNI ACTGG 1 cut(s) 361
BseRI GAGGAG 1 cut(s) 173
BseSI GKGCMC 1 cut(s) 42
BseXI GCAGC 1 cut(s) 85
BseYI CCCAGC 1 cut(s) 302
BshFI GGCC 1 cut(s) 150
BsiHKCI CYCGRG 1 cut(s) 205
BsiSI CCGG 1 cut(s) 206
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 3 cut(s) 157, 206, 212
BsmAI GTCTC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 22
BsnI GGCC 1 cut(s) 150
Bso31I GGTCTC 1 cut(s) 341
BsoBI CYCGRG 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 15
BspACI CCGC 1 cut(s) 276
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 2 cut(s) 118, 351
BspLI GGNNCC 2 cut(s) 33, 229
BspMAI CTGCAG 1 cut(s) 23
BspTI CTTAAG 2 cut(s) 410, 421
BspTNI GGTCTC 1 cut(s) 341
BsrI ACTGG 1 cut(s) 361
BssECI CCNNGG 2 cut(s) 205, 331
BssMI GATC 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 331
Bst6I CTCTTC 1 cut(s) 56
BstAFI CTTAAG 2 cut(s) 410, 421
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 105, 338
BstF5I GGATG 1 cut(s) 396
BstKTI GATC 1 cut(s) 18
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 1 cut(s) 15
BstMWI GCNNNNNNNGC 2 cut(s) 236, 275
BstSCI CCNGG 2 cut(s) 204, 205
BstSFI CTRYAG 2 cut(s) 19, 153
BstSLI GKGCMC 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 85
BstXI CCANNNNNNTGG 1 cut(s) 173
BsuRI GGCC 1 cut(s) 150
BtsCI GGATG 1 cut(s) 396
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 276
Cac8I GCNNGC 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 149
Cfr9I CCCGGG 1 cut(s) 205
CviAII CATG 3 cut(s) 28, 219, 388
DdeI CTNAG 2 cut(s) 105, 338
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco130I CCWWGG 1 cut(s) 331
Eco31I GGTCTC 1 cut(s) 341
Eco88I CYCGRG 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 331
FaeI CATG 3 cut(s) 31, 222, 391
FaiI YATR 7 cut(s) 14, 29, 50, 220, 254, 345, 389
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FaqI GGGAC 1 cut(s) 22
FatI CATG 3 cut(s) 27, 218, 387
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 1 cut(s) 383
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 1 cut(s) 311
GluI GCNGC 1 cut(s) 99
GsaI CCCAGC 1 cut(s) 306
HaeIII GGCC 1 cut(s) 150
HapII CCGG 1 cut(s) 206
Hin1II CATG 3 cut(s) 31, 222, 391
HinfI GANTC 1 cut(s) 406
HpaII CCGG 1 cut(s) 206
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 3 cut(s) 180, 341, 405
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 1 cut(s) 328
HpyAV CCTTC 3 cut(s) 52, 124, 410
HpyCH4IV ACGT 1 cut(s) 383
HpyCH4V TGCA 3 cut(s) 21, 71, 101
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 275
HpyF3I CTNAG 2 cut(s) 105, 338
HpySE526I ACGT 1 cut(s) 383
Hsp92II CATG 3 cut(s) 31, 222, 391
Kzo9I GATC 1 cut(s) 15
LmnI GCTCC 3 cut(s) 215, 227, 393
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 4 cut(s) 80, 110, 171, 405
MaeI CTAG 1 cut(s) 311
MaeII ACGT 1 cut(s) 383
MaeIII GTNAC 1 cut(s) 352
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 2 cut(s) 280, 316
MnlI CCTC 1 cut(s) 151
MseI TTAA 2 cut(s) 411, 422
MspCI CTTAAG 2 cut(s) 410, 421
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 2 cut(s) 206, 207
MwoI GCNNNNNNNGC 2 cut(s) 236, 275
NciI CCSGG 2 cut(s) 206, 207
NdeII GATC 1 cut(s) 15
NlaIII CATG 3 cut(s) 31, 222, 391
NlaIV GGNNCC 2 cut(s) 33, 229
PfeI GAWTC 1 cut(s) 406
PkrI GCNGC 1 cut(s) 100
PspFI CCCAGC 1 cut(s) 302
PspN4I GGNNCC 2 cut(s) 33, 229
PspPI GGNCC 1 cut(s) 149
PstI CTGCAG 1 cut(s) 23
SaqAI TTAA 2 cut(s) 411, 422
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 1 cut(s) 15
Sau96I GGNCC 1 cut(s) 149
ScrFI CCNGG 2 cut(s) 206, 207
SduI GDGCHC 1 cut(s) 42
SetI ASST 6 cut(s) 100, 148, 241, 333, 386, 428
SfaNI GCATC 4 cut(s) 80, 110, 171, 405
SfcI CTRYAG 2 cut(s) 19, 153
SmaI CCCGGG 1 cut(s) 207
SmlI CTYRAG 2 cut(s) 410, 421
SmoI CTYRAG 2 cut(s) 410, 421
Sse9I AATT 2 cut(s) 280, 316
SsiI CCGC 1 cut(s) 276
SspMI CTAG 1 cut(s) 311
StyD4I CCNGG 2 cut(s) 204, 205
StyI CCWWGG 1 cut(s) 331
TaiI ACGT 1 cut(s) 386
TasI AATT 2 cut(s) 280, 316
TfiI GAWTC 1 cut(s) 406
Tru1I TTAA 2 cut(s) 411, 422
Tru9I TTAA 2 cut(s) 411, 422
TscAI CASTG 1 cut(s) 276
TseI GCWGC 1 cut(s) 98
TspDTI ATGAA 2 cut(s) 34, 376
TspMI CCCGGG 1 cut(s) 205
TspRI CASTG 1 cut(s) 276
Vha464I CTTAAG 2 cut(s) 410, 421
XapI RAATTY 2 cut(s) 280, 316
XmaI CCCGGG 1 cut(s) 205
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.