pycom13g06930

Putative small multi-drug export protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0011202
Physical Location & Seq
Reverse (-)
4591038 .. 4592515
1478 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g06930.2

Sequence Viewer

Length: 978 bp
ATGGCTGCATCTCTATCAGCATCCACATCACCATTGACGTCAAATTTGTCTCTCAGAAAAATCCACTTCGTATTTTCACCAGAAAATAGCCGTCCAATCATTACCCACATCAAACAATCCCCTTCCAGCCCCAATGCTGAGTTGAAGTTTCAAATTTTGCCCAATTTAAACCCCTCTATTGCAATTTCACCCCTCCCTCGCGCTGCATCAAGAGTTTCCTCACGTGGGTTTCTTGAAACAGACGAGGAAGATGAGCTTTTGCCGTTGTTTGAGGAGCGGCCGGTCAAATTTGCCCTTTGGGTTTTGGTCTGGGCATCTGTGTCGCTTGCTTTGTTCGCGGCTTCCGGAAATGCAAATGCTGCTGCTGCGGCGGCTGCGGATTCAATCAGAGCCTCCAACTTTGGCCTGAAGATTGCGACGGCGCTTCGAAGCTCCGGCTGGCCTGATGAGGCTGTGGTGTTTGCTCTGGCCACACTTCCGGTCATTGAGCTTCGTGGGGCCATTCCTGTTGGTTACTGGATGCAGCTTAAGCCTGTTCTGCTAACAGCTCTATCTGTTGTTGGGAACATGGTTCCTGTGCCCTTCATCATACTTTACCTGAAGAGATTTGCATCTTTCCTTGCTGGAAAGAACAAGGCTGCAGCTCGGTTCCTTGACTTGCTGTTTGTGAGGGCTAAAGAGAAAGCTGGCCCTGTAGAGGAGTTCCAATGGCTTGGTCTGATGCTGTTTGTGGCTGTGCCTTTCCCGGGAACAGGAGCATGGACAGGGGCCATCATAGCTTCCATTCTCGACATGCCATTCTGGTCAGCGGTGTCTGCAAATTTCTTTGGTGTTGTGTTGGCTGGGCTTCTGGTAAATTTGTTGGTGAACCTTGGCCTCAAATATGCAGTTGTTACCGGTATTGTCCTCTTCTTTATTTCCACTTTCATGTGGAGCATCCTTCGGAATCTTAAGAAGTCTTTAAGCTCATCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sm_multidrug_ex

Protein Analysis

326

Amino Acids

35.03

Weight (kDa)

9.84

Isoelectric Point (pI)

45.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02590
fragaria_vesca FvH4_4g32070
malus_domestica MD13G1079600.v1.1 MD16G1079500.v1.1
prunus_persica Prupe.1G267200_v2.0.a1
pyrus_communis pycom13g06930 pycom16g06870
rosa_chinensis RchiOBHm_Chr4g0440761
rosa_laevigata RLG00000006156
rosa_multiflora Rmu_co8415195.1_g000001 Rmu_sc0000424.1_g000005 Rmu_sc0022158.1_g000003
rosa_roxburghii Rroxscaffold_5G00381520
rosa_rugosa Rorug04G0327700
rosa_samantha Rh4AG379500 Rh4BG392400 Rh4CG407100 Rh4DG386200
rosa_wichuraiana Rw4G032640 Rw4G032670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 41
AccBSI CCGCTC 1 cut(s) 277
AccII CGCG 2 cut(s) 201, 338
AccIII TCCGGA 1 cut(s) 344
AciI CCGC 6 cut(s) 277, 338, 368, 371, 377, 809
AcoI YGGCCR 2 cut(s) 278, 468
AcsI RAATTY 5 cut(s) 43, 153, 287, 820, 856
AcuI CTGAAG 2 cut(s) 428, 620
AcvI CACGTG 1 cut(s) 224
AcyI GRCGYC 1 cut(s) 38
AfiI CCNNNNNNNGG 4 cut(s) 225, 697, 746, 752
AflII CTTAAG 2 cut(s) 527, 950
AgeI ACCGGT 1 cut(s) 896
AgsI TTSAA 4 cut(s) 145, 152, 236, 384
AluBI AGCT 9 cut(s) 256, 432, 490, 526, 548, 644, 686, 779, 966
AluI AGCT 9 cut(s) 256, 432, 490, 526, 548, 644, 686, 779, 966
Alw26I GTCTC 1 cut(s) 54
Ama87I CYCGRG 1 cut(s) 745
Aor13HI TCCGGA 1 cut(s) 344
AoxI GGCC 8 cut(s) 278, 403, 440, 468, 498, 688, 768, 874
ApeKI GCWGC 9 cut(s) 5, 203, 359, 362, 365, 374, 523, 638, 641
ApoI RAATTY 5 cut(s) 43, 153, 287, 820, 856
ArsI GACNNNNNNTTYG 4 cut(s) 28, 60, 647, 679
AsiGI ACCGGT 1 cut(s) 896
AspLEI GCGC 2 cut(s) 203, 424
AspS9I GGNCC 3 cut(s) 498, 689, 768
AsuC2I CCSGG 2 cut(s) 746, 747
AsuHPI GGTGA 4 cut(s) 21, 69, 180, 877
AsuII TTCGAA 1 cut(s) 427
AvaI CYCGRG 1 cut(s) 745
BaeGI GKGCMC 1 cut(s) 582
BalI TGGCCA 1 cut(s) 470
BbrPI CACGTG 1 cut(s) 224
BbvI GCAGC 8 cut(s) 190, 346, 349, 352, 361, 535, 625, 653
BccI CCATC 1 cut(s) 779
BceAI ACGGC 3 cut(s) 75, 247, 435
BcgI CGANNNNNNTGC 2 cut(s) 303, 337
BcnI CCSGG 2 cut(s) 746, 747
BcoDI GTCTC 1 cut(s) 54
BfmI CTRYAG 2 cut(s) 639, 693
BfoI RGCGCY 1 cut(s) 425
BfrI CTTAAG 2 cut(s) 527, 950
Bme1390I CCNGG 2 cut(s) 746, 747
BmeT110I CYCGRG 1 cut(s) 745
BmgT120I GGNCC 3 cut(s) 498, 689, 768
BmiI GGNNCC 4 cut(s) 499, 573, 650, 769
BmrFI CCNGG 2 cut(s) 746, 747
BmsI GCATC 8 cut(s) 17, 29, 215, 323, 510, 620, 711, 945
Bpu14I TTCGAA 1 cut(s) 427
BpuMI CCSGG 2 cut(s) 746, 747
BsaAI YACGTR 1 cut(s) 224
BsaBI GATNNNNATC 1 cut(s) 610
BsaHI GRCGYC 1 cut(s) 38
BsaJI CCNNGG 2 cut(s) 745, 871
BsaWI WCCGGW 3 cut(s) 344, 478, 896
Bsc4I CCNNNNNNNGG 4 cut(s) 225, 697, 746, 752
Bse118I RCCGGY 2 cut(s) 280, 896
Bse1I ACTGG 1 cut(s) 521
Bse8I GATNNNNATC 1 cut(s) 610
BseAI TCCGGA 1 cut(s) 344
BseDI CCNNGG 2 cut(s) 745, 871
BseGI GGATG 3 cut(s) 20, 525, 936
BseJI GATNNNNATC 1 cut(s) 610
BseLI CCNNNNNNNGG 4 cut(s) 225, 697, 746, 752
BseMII CTCAG 2 cut(s) 67, 129
BseNI ACTGG 1 cut(s) 521
BseRI GAGGAG 2 cut(s) 287, 713
BseSI GKGCMC 1 cut(s) 582
BseX3I CGGCCG 1 cut(s) 278
BseXI GCAGC 8 cut(s) 190, 346, 349, 352, 361, 535, 625, 653
BseYI CCCAGC 1 cut(s) 842
Bsh1236I CGCG 2 cut(s) 201, 338
Bsh1285I CGRYCG 1 cut(s) 281
BshFI GGCC 8 cut(s) 280, 405, 442, 470, 500, 690, 770, 876
BshTI ACCGGT 1 cut(s) 896
BsiEI CGRYCG 1 cut(s) 281
BsiHKCI CYCGRG 1 cut(s) 745
BsiSI CCGG 6 cut(s) 281, 345, 435, 479, 746, 897
BslI CCNNNNNNNGG 4 cut(s) 225, 697, 746, 752
BsmAI GTCTC 1 cut(s) 54
BsnI GGCC 8 cut(s) 280, 405, 442, 470, 500, 690, 770, 876
BsoBI CYCGRG 1 cut(s) 745
Bsp119I TTCGAA 1 cut(s) 427
Bsp1286I GDGCHC 1 cut(s) 582
Bsp13I TCCGGA 1 cut(s) 344
BspACI CCGC 6 cut(s) 277, 338, 368, 371, 377, 809
BspANI GGCC 8 cut(s) 280, 405, 442, 470, 500, 690, 770, 876
BspCNI CTCAG 2 cut(s) 66, 130
BspEI TCCGGA 1 cut(s) 344
BspFNI CGCG 2 cut(s) 201, 338
BspLI GGNNCC 4 cut(s) 499, 573, 650, 769
BspMAI CTGCAG 1 cut(s) 643
BspT104I TTCGAA 1 cut(s) 427
BspTI CTTAAG 2 cut(s) 527, 950
BsrBI CCGCTC 1 cut(s) 277
BsrFI RCCGGY 2 cut(s) 280, 896
BsrI ACTGG 1 cut(s) 521
BssAI RCCGGY 2 cut(s) 280, 896
BssECI CCNNGG 2 cut(s) 745, 871
BssNI GRCGYC 1 cut(s) 38
BssT1I CCWWGG 1 cut(s) 871
Bst6I CTCTTC 2 cut(s) 596, 914
BstACI GRCGYC 1 cut(s) 38
BstAFI CTTAAG 2 cut(s) 527, 950
BstAPI GCANNNNNTGC 1 cut(s) 359
BstBAI YACGTR 1 cut(s) 224
BstBI TTCGAA 1 cut(s) 427
BstC8I GCNNGC 3 cut(s) 327, 440, 688
BstDEI CTNAG 2 cut(s) 53, 138
BstF5I GGATG 3 cut(s) 20, 525, 936
BstFNI CGCG 2 cut(s) 201, 338
BstH2I RGCGCY 1 cut(s) 425
BstHHI GCGC 2 cut(s) 203, 424
BstMAI GTCTC 1 cut(s) 54
BstMCI CGRYCG 1 cut(s) 281
BstNSI RCATGY 1 cut(s) 796
BstSCI CCNGG 2 cut(s) 744, 745
BstSFI CTRYAG 2 cut(s) 639, 693
BstSLI GKGCMC 1 cut(s) 582
BstUI CGCG 2 cut(s) 201, 338
BstV1I GCAGC 8 cut(s) 190, 346, 349, 352, 361, 535, 625, 653
BstXI CCANNNNNNTGG 1 cut(s) 713
BstZI CGGCCG 1 cut(s) 278
BsuRI GGCC 8 cut(s) 280, 405, 442, 470, 500, 690, 770, 876
BtsCI GGATG 3 cut(s) 20, 525, 936
Cac8I GCNNGC 3 cut(s) 327, 440, 688
CfoI GCGC 2 cut(s) 203, 424
Cfr10I RCCGGY 2 cut(s) 280, 896
Cfr13I GGNCC 3 cut(s) 498, 689, 768
Cfr9I CCCGGG 1 cut(s) 745
CspAI ACCGGT 1 cut(s) 896
CviAII CATG 4 cut(s) 568, 759, 793, 928
DdeI CTNAG 2 cut(s) 53, 138
DraI TTTAAA 1 cut(s) 168
EaeI YGGCCR 2 cut(s) 278, 468
EagI CGGCCG 1 cut(s) 278
Eam1104I CTCTTC 2 cut(s) 596, 914
EarI CTCTTC 2 cut(s) 596, 914
EclXI CGGCCG 1 cut(s) 278
Eco130I CCWWGG 1 cut(s) 871
Eco52I CGGCCG 1 cut(s) 278
Eco57I CTGAAG 2 cut(s) 428, 620
Eco72I CACGTG 1 cut(s) 224
Eco88I CYCGRG 1 cut(s) 745
EcoT14I CCWWGG 1 cut(s) 871
ErhI CCWWGG 1 cut(s) 871
FaeI CATG 4 cut(s) 571, 762, 796, 931
FaiI YATR 7 cut(s) 569, 590, 760, 776, 794, 885, 929
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FatI CATG 4 cut(s) 567, 758, 792, 927
FokI GGATG 3 cut(s) 7, 532, 923
GlaI GCGC 2 cut(s) 202, 423
GsaI CCCAGC 1 cut(s) 846
HaeII RGCGCY 1 cut(s) 425
HaeIII GGCC 8 cut(s) 280, 405, 442, 470, 500, 690, 770, 876
HapII CCGG 6 cut(s) 281, 345, 435, 479, 746, 897
HhaI GCGC 2 cut(s) 203, 424
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 4 cut(s) 571, 762, 796, 931
Hin6I GCGC 2 cut(s) 201, 422
HinP1I GCGC 2 cut(s) 201, 422
HinfI GANTC 2 cut(s) 380, 946
HpaII CCGG 6 cut(s) 281, 345, 435, 479, 746, 897
HphI GGTGA 4 cut(s) 21, 69, 180, 877
Hpy166II GTNNAC 1 cut(s) 868
Hpy188I TCNGA 4 cut(s) 56, 389, 720, 945
Hpy188III TCNNGA 4 cut(s) 210, 233, 345, 788
Hpy8I GTNNAC 1 cut(s) 868
Hpy99I CGWCG 1 cut(s) 421
HpyAV CCTTC 3 cut(s) 132, 592, 950
HpyCH4IV ACGT 2 cut(s) 38, 223
HpyCH4V TGCA 9 cut(s) 8, 182, 206, 353, 523, 611, 641, 818, 887
HpyF3I CTNAG 2 cut(s) 53, 138
HpySE526I ACGT 2 cut(s) 38, 223
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 4 cut(s) 571, 762, 796, 931
HspAI GCGC 2 cut(s) 201, 422
Kpn2I TCCGGA 1 cut(s) 344
LmnI GCTCC 4 cut(s) 274, 437, 755, 933
Lsp1109I GCAGC 8 cut(s) 190, 346, 349, 352, 361, 535, 625, 653
LweI GCATC 8 cut(s) 17, 29, 215, 323, 510, 620, 711, 945
MaeII ACGT 2 cut(s) 38, 223
MaeIII GTNAC 2 cut(s) 512, 892
MbiI CCGCTC 1 cut(s) 277
MboII GAAGA 4 cut(s) 260, 421, 613, 901
MhlI GDGCHC 1 cut(s) 582
MlsI TGGCCA 1 cut(s) 470
MluCI AATT 7 cut(s) 43, 153, 163, 183, 287, 820, 856
MluNI TGGCCA 1 cut(s) 470
MmeI TCCRAC 1 cut(s) 420
Mox20I TGGCCA 1 cut(s) 470
MroI TCCGGA 1 cut(s) 344
MscI TGGCCA 1 cut(s) 470
MseI TTAA 4 cut(s) 167, 528, 951, 962
MslI CAYNNNNRTG 1 cut(s) 926
Msp20I TGGCCA 1 cut(s) 470
MspA1I CMGCKG 1 cut(s) 809
MspCI CTTAAG 2 cut(s) 527, 950
MspI CCGG 6 cut(s) 281, 345, 435, 479, 746, 897
MspR9I CCNGG 2 cut(s) 746, 747
MvnI CGCG 2 cut(s) 201, 338
NciI CCSGG 2 cut(s) 746, 747
NlaIII CATG 4 cut(s) 571, 762, 796, 931
NlaIV GGNNCC 4 cut(s) 499, 573, 650, 769
NspI RCATGY 1 cut(s) 796
NspV TTCGAA 1 cut(s) 427
PfeI GAWTC 2 cut(s) 380, 946
PinAI ACCGGT 1 cut(s) 896
PmaCI CACGTG 1 cut(s) 224
PmlI CACGTG 1 cut(s) 224
Ppu21I YACGTR 1 cut(s) 224
PspCI CACGTG 1 cut(s) 224
PspFI CCCAGC 1 cut(s) 842
PspN4I GGNNCC 4 cut(s) 499, 573, 650, 769
PspPI GGNCC 3 cut(s) 498, 689, 768
PstI CTGCAG 1 cut(s) 643
RseI CAYNNNNRTG 1 cut(s) 926
SaqAI TTAA 4 cut(s) 167, 528, 951, 962
Sau96I GGNCC 3 cut(s) 498, 689, 768
ScrFI CCNGG 2 cut(s) 746, 747
SduI GDGCHC 1 cut(s) 582
SfaNI GCATC 8 cut(s) 17, 29, 215, 323, 510, 620, 711, 945
SfcI CTRYAG 2 cut(s) 639, 693
SfuI TTCGAA 1 cut(s) 427
SmaI CCCGGG 1 cut(s) 747
SmiMI CAYNNNNRTG 1 cut(s) 926
SmlI CTYRAG 2 cut(s) 527, 950
SmoI CTYRAG 2 cut(s) 527, 950
Sse9I AATT 7 cut(s) 43, 153, 163, 183, 287, 820, 856
SsiI CCGC 6 cut(s) 277, 338, 368, 371, 377, 809
StyD4I CCNGG 2 cut(s) 744, 745
StyI CCWWGG 1 cut(s) 871
TaiI ACGT 2 cut(s) 41, 226
TaqI TCGA 2 cut(s) 427, 789
TasI AATT 7 cut(s) 43, 153, 163, 183, 287, 820, 856
TauI GCSGC 4 cut(s) 280, 341, 371, 374
TfiI GAWTC 2 cut(s) 380, 946
Tru1I TTAA 4 cut(s) 167, 528, 951, 962
Tru9I TTAA 4 cut(s) 167, 528, 951, 962
TseI GCWGC 9 cut(s) 5, 203, 359, 362, 365, 374, 523, 638, 641
TspDTI ATGAA 2 cut(s) 574, 916
TspMI CCCGGG 1 cut(s) 745
Vha464I CTTAAG 2 cut(s) 527, 950
XapI RAATTY 5 cut(s) 43, 153, 287, 820, 856
XceI RCATGY 1 cut(s) 796
XmaI CCCGGG 1 cut(s) 745
ZraI GACGTC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.