AT2G03130

structural constituent of ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007928
Physical Location & Seq
Forward (+)
940607 .. 941076
470 bp
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UTR
Exon/CDS
Intron
AT2G03130.1

Sequence Viewer

Length: 333 bp
ATGAGAGTACTGAGGGACGGCCAAAGTGGTGGTGGTGCCAATGAGGGAGCTAAAGCGGAGAAGACTGTGTTTGAGGTTAAACTTGAGTCTTTCGAGGCACGTGCGAAAATCAAGATCATTAAGGAGGTAAGGAGAATCATTGGTGTGGGTCTTAAGGAAGCTATGAAATTGGTGGTGAAGGCTCCTACGGTTTTGAAAACAGGACTTTCAAAAGAAGAAGGAGAGGAGGTCGTTGAGAAGTTGAATGCACTTGGTGCTGAAGCTGTTTTACAGACTAGAGTGAGTGATATTCCAAGTCTGTTTTGGAACAGTTTGTTCCATCTAATAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

110

Amino Acids

12.0

Weight (kDa)

9.3

Isoelectric Point (pI)

25.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L12 PF00542 24 - 90 1.2e-18 Ribosomal protein L7/L12 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 35
AciI CCGC 1 cut(s) 56
AcoI YGGCCR 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 279
AcvI CACGTG 1 cut(s) 101
AdeI CACNNNGTG 1 cut(s) 254
AfaI GTAC 1 cut(s) 9
AflII CTTAAG 1 cut(s) 152
AgsI TTSAA 3 cut(s) 196, 210, 244
AluBI AGCT 4 cut(s) 50, 161, 263, 330
AluI AGCT 4 cut(s) 50, 161, 263, 330
AoxI GGCC 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 187
BanI GGYRCC 1 cut(s) 35
BarI GAAGNNNNNNTAC 2 cut(s) 252, 284
BbrPI CACGTG 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 68
BccI CCATC 1 cut(s) 327
BceAI ACGGC 1 cut(s) 34
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BfaI CTAG 1 cut(s) 276
BfrI CTTAAG 1 cut(s) 152
BmcAI AGTACT 1 cut(s) 9
BmiI GGNNCC 2 cut(s) 37, 183
BpiI GAAGAC 1 cut(s) 68
BpuEI CTTGAG 1 cut(s) 104
BsaAI YACGTR 1 cut(s) 101
BsaXI ACNNNNNCTCC 2 cut(s) 213, 243
BseRI GAGGAG 1 cut(s) 239
BshFI GGCC 1 cut(s) 21
BshNI GGYRCC 1 cut(s) 35
BslFI GGGAC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 29
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 1 cut(s) 21
Bsp143I GATC 1 cut(s) 114
BspACI CCGC 1 cut(s) 56
BspANI GGCC 1 cut(s) 21
BspLI GGNNCC 2 cut(s) 37, 183
BspT107I GGYRCC 1 cut(s) 35
BspTI CTTAAG 1 cut(s) 152
BssMI GATC 1 cut(s) 114
Bst4CI ACNGT 3 cut(s) 67, 190, 311
BstAFI CTTAAG 1 cut(s) 152
BstAPI GCANNNNNTGC 1 cut(s) 254
BstBAI YACGTR 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 11
BstKTI GATC 1 cut(s) 117
BstMBI GATC 1 cut(s) 114
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstV2I GAAGAC 1 cut(s) 68
BstXI CCANNNNNNTGG 1 cut(s) 29
BsuRI GGCC 1 cut(s) 21
Csp6I GTAC 1 cut(s) 8
CviJI RGCY 6 cut(s) 21, 50, 161, 182, 263, 330
CviKI_1 RGCY 6 cut(s) 21, 50, 161, 182, 263, 330
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 1 cut(s) 11
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
DraIII CACNNNGTG 1 cut(s) 254
EaeI YGGCCR 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 279
Eco72I CACGTG 1 cut(s) 101
FaiI YATR 1 cut(s) 164
FaqI GGGAC 1 cut(s) 29
FspBI CTAG 1 cut(s) 276
HaeIII GGCC 1 cut(s) 21
HinfI GANTC 2 cut(s) 86, 135
HphI GGTGA 1 cut(s) 187
Hpy188III TCNNGA 1 cut(s) 112
HpyAV CCTTC 2 cut(s) 172, 212
HpyCH4III ACNGT 3 cut(s) 67, 190, 311
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 1 cut(s) 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 100
Kzo9I GATC 1 cut(s) 114
LmnI GCTCC 2 cut(s) 47, 187
LpnPI CCDG 1 cut(s) 186
MaeI CTAG 1 cut(s) 276
MaeII ACGT 1 cut(s) 100
MalI GATC 1 cut(s) 116
MboI GATC 1 cut(s) 114
MboII GAAGA 2 cut(s) 73, 227
MluCI AATT 1 cut(s) 167
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 7 cut(s) 6, 37, 67, 88, 118, 217, 220
MseI TTAA 3 cut(s) 78, 120, 153
MslI CAYNNNNRTG 1 cut(s) 143
MspCI CTTAAG 1 cut(s) 152
Mva1269I GAATGC 1 cut(s) 250
MwoI GCNNNNNNNGC 1 cut(s) 254
NdeII GATC 1 cut(s) 114
NlaIV GGNNCC 2 cut(s) 37, 183
PctI GAATGC 1 cut(s) 250
PfeI GAWTC 1 cut(s) 135
PleI GAGTC 1 cut(s) 94
PmaCI CACGTG 1 cut(s) 101
PmlI CACGTG 1 cut(s) 101
PpsI GAGTC 1 cut(s) 94
Ppu21I YACGTR 1 cut(s) 101
PspCI CACGTG 1 cut(s) 101
PspN4I GGNNCC 2 cut(s) 37, 183
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
RseI CAYNNNNRTG 1 cut(s) 143
SaqAI TTAA 3 cut(s) 78, 120, 153
Sau3AI GATC 1 cut(s) 114
ScaI AGTACT 1 cut(s) 9
SchI GAGTC 1 cut(s) 95
SetI ASST 8 cut(s) 52, 78, 103, 129, 163, 231, 265, 332
SgeI CNNG 9 cut(s) 95, 106, 111, 113, 124, 213, 263, 288, 306
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 2 cut(s) 83, 152
SmoI CTYRAG 2 cut(s) 83, 152
Sse9I AATT 1 cut(s) 167
SsiI CCGC 1 cut(s) 56
SspMI CTAG 1 cut(s) 276
TaaI ACNGT 3 cut(s) 67, 190, 311
TaiI ACGT 1 cut(s) 103
TaqI TCGA 1 cut(s) 93
TasI AATT 1 cut(s) 167
TatI WGTACW 1 cut(s) 7
TfiI GAWTC 1 cut(s) 135
Tru1I TTAA 3 cut(s) 78, 120, 153
Tru9I TTAA 3 cut(s) 78, 120, 153
TspDTI ATGAA 1 cut(s) 179
Vha464I CTTAAG 1 cut(s) 152
XcmI CCANNNNNNNNNTGG 2 cut(s) 29, 300
XspI CTAG 1 cut(s) 276
ZrmI AGTACT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.