AT3G06040

Ribosomal protein L12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007928
Physical Location & Seq
Reverse (-)
1824317 .. 1825740
1424 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G06040.3

Sequence Viewer

Length: 561 bp
ATGAAGCTTATTTCACTTGTTAGAAACGTTCGTTCTCGCCAATGTCAACCGGAAGTAATCTGGTCTGTGCAAGTTCGTTTCTTGCAGCAAGACTCTGTCTCGAAAGCTAAACCCAAGAAATACAAATACCCGTCAGTTTATGATCCGTATGGTCCTAGACCCCAGCCTTCAAGCAAAATCATGGAGCTAGCTGAGCGTATAGCTGCTTTATCTCCAGAAGAAAGAAAACAGATTGGTCCTGCACTCAATGAACACCTGAGGCTTCCAAAACAACAGATGATTTCATCGGACGGCATTGGAGCAAAACAAGATACCGGAGCTGGGAATGTAGAGGAGAAGAAGGAGAAGACGGCTTTCGATGTGAAGTTGGAGAAGTTTAATGCATCTGATAAGATCAAAGTGATAAAAGAAGTGAGAACGTTCACAAGTTTGGGTCTGAAGGAAGCGAAAGAGCTTGTGGAGAAAGTCCCGGCTATTCTTAAACAAGGTGTGACAAAGGAAGAAGCTAATGAAATCATAGCCAAGATCAAAGCTGTTGGTGGAATCGCAGTTATGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L12

Protein Analysis

186

Amino Acids

20.8

Weight (kDa)

9.59

Isoelectric Point (pI)

42.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L12 PF00542 119 - 181 3.1e-21 Ribosomal protein L7/L12 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 2 cut(s) 27, 419
AclWI GGATC 1 cut(s) 137
AcuI CTGAAG 1 cut(s) 458
AfiI CCNNNNNNNGG 1 cut(s) 321
AgsI TTSAA 1 cut(s) 171
AluBI AGCT 9 cut(s) 7, 107, 187, 191, 203, 320, 454, 506, 533
AluI AGCT 9 cut(s) 7, 107, 187, 191, 203, 320, 454, 506, 533
Alw26I GTCTC 1 cut(s) 103
AlwI GGATC 1 cut(s) 137
ApeKI GCWGC 2 cut(s) 85, 203
AspS9I GGNCC 2 cut(s) 152, 236
AsuC2I CCSGG 1 cut(s) 470
AsuNHI GCTAGC 1 cut(s) 187
AvaII GGWCC 2 cut(s) 152, 236
AxyI CCTNAGG 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 353
BbvI GCAGC 2 cut(s) 97, 190
BceAI ACGGC 2 cut(s) 307, 366
BcnI CCSGG 1 cut(s) 470
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 2 cut(s) 156, 188
BisI GCNGC 2 cut(s) 86, 204
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 2 cut(s) 87, 205
Bme1390I CCNGG 1 cut(s) 470
Bme18I GGWCC 2 cut(s) 152, 236
BmgT120I GGNCC 2 cut(s) 152, 236
BmrFI CCNGG 1 cut(s) 470
BmsI GCATC 1 cut(s) 392
BmtI GCTAGC 1 cut(s) 191
BpiI GAAGAC 1 cut(s) 353
BpmI CTGGAG 1 cut(s) 198
Bpu1102I GCTNAGC 1 cut(s) 192
BpuMI CCSGG 1 cut(s) 470
BsaWI WCCGGW 2 cut(s) 49, 314
Bsc4I CCNNNNNNNGG 1 cut(s) 321
Bse21I CCTNAGG 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 321
BseMII CTCAG 2 cut(s) 183, 248
BseRI GAGGAG 1 cut(s) 347
BseXI GCAGC 2 cut(s) 97, 190
BseYI CCCAGC 2 cut(s) 162, 320
BsgI GTGCAG 1 cut(s) 225
BsiSI CCGG 3 cut(s) 50, 315, 470
BslFI GGGAC 1 cut(s) 452
BslI CCNNNNNNNGG 1 cut(s) 321
BsmAI GTCTC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 452
Bsp143I GATC 3 cut(s) 142, 393, 525
Bsp1720I GCTNAGC 1 cut(s) 192
BspCNI CTCAG 2 cut(s) 184, 249
BspOI GCTAGC 1 cut(s) 191
BspPI GGATC 1 cut(s) 137
BssMI GATC 3 cut(s) 142, 393, 525
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 2 cut(s) 192, 257
BstKTI GATC 3 cut(s) 145, 396, 528
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 3 cut(s) 142, 393, 525
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 468
BstV1I GCAGC 2 cut(s) 97, 190
BstV2I GAAGAC 1 cut(s) 353
Bsu36I CCTNAGG 1 cut(s) 257
Cac8I GCNNGC 1 cut(s) 189
Cfr13I GGNCC 2 cut(s) 152, 236
CviAII CATG 1 cut(s) 181
DdeI CTNAG 2 cut(s) 192, 257
DpnI GATC 3 cut(s) 144, 395, 527
DpnII GATC 3 cut(s) 142, 393, 525
Eco47I GGWCC 2 cut(s) 152, 236
Eco57I CTGAAG 1 cut(s) 458
Eco81I CCTNAGG 1 cut(s) 257
EcoT22I ATGCAT 1 cut(s) 385
FaeI CATG 1 cut(s) 184
FaiI YATR 6 cut(s) 141, 150, 182, 200, 518, 554
FaqI GGGAC 1 cut(s) 452
FatI CATG 1 cut(s) 180
Fnu4HI GCNGC 2 cut(s) 86, 204
Fsp4HI GCNGC 2 cut(s) 86, 204
FspBI CTAG 2 cut(s) 156, 188
GluI GCNGC 2 cut(s) 86, 204
GsaI CCCAGC 2 cut(s) 166, 324
GsuI CTGGAG 1 cut(s) 198
HapII CCGG 3 cut(s) 50, 315, 470
Hin1II CATG 1 cut(s) 184
HincII GTYRAC 1 cut(s) 47
HindII GTYRAC 1 cut(s) 47
HindIII AAGCTT 1 cut(s) 5
HinfI GANTC 2 cut(s) 92, 543
HpaII CCGG 3 cut(s) 50, 315, 470
Hpy166II GTNNAC 2 cut(s) 47, 423
Hpy188I TCNGA 3 cut(s) 289, 388, 438
Hpy188III TCNNGA 2 cut(s) 100, 215
Hpy8I GTNNAC 2 cut(s) 47, 423
HpyAV CCTTC 3 cut(s) 177, 334, 433
HpyCH4IV ACGT 2 cut(s) 27, 419
HpyCH4V TGCA 4 cut(s) 70, 85, 242, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HpyF3I CTNAG 2 cut(s) 192, 257
HpySE526I ACGT 2 cut(s) 27, 419
Hsp92II CATG 1 cut(s) 184
Kzo9I GATC 3 cut(s) 142, 393, 525
LmnI GCTCC 3 cut(s) 184, 299, 317
LpnPI CCDG 9 cut(s) 46, 63, 176, 228, 252, 269, 306, 328, 483
Lsp1109I GCAGC 2 cut(s) 97, 190
LweI GCATC 1 cut(s) 392
MaeI CTAG 2 cut(s) 156, 188
MaeII ACGT 2 cut(s) 27, 419
MaeIII GTNAC 1 cut(s) 490
MalI GATC 3 cut(s) 144, 395, 527
MboI GATC 3 cut(s) 142, 393, 525
MboII GAAGA 4 cut(s) 230, 349, 358, 512
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 348
MnlI CCTC 2 cut(s) 252, 325
Mph1103I ATGCAT 1 cut(s) 385
MseI TTAA 2 cut(s) 378, 480
MspI CCGG 3 cut(s) 50, 315, 470
MspR9I CCNGG 1 cut(s) 470
MwoI GCNNNNNNNGC 1 cut(s) 193
NciI CCSGG 1 cut(s) 470
NdeII GATC 3 cut(s) 142, 393, 525
NheI GCTAGC 1 cut(s) 187
NlaIII CATG 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 490
NsiI ATGCAT 1 cut(s) 385
PfeI GAWTC 1 cut(s) 543
PflFI GACNNNGTC 1 cut(s) 95
PkrI GCNGC 2 cut(s) 87, 205
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
Psp1406I AACGTT 2 cut(s) 27, 419
PspFI CCCAGC 2 cut(s) 162, 320
PspPI GGNCC 2 cut(s) 152, 236
PsyI GACNNNGTC 1 cut(s) 95
SaqAI TTAA 2 cut(s) 378, 480
SatI GCNGC 2 cut(s) 86, 204
Sau3AI GATC 3 cut(s) 142, 393, 525
Sau96I GGNCC 2 cut(s) 152, 236
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 470
SfaNI GCATC 1 cut(s) 392
SinI GGWCC 2 cut(s) 152, 236
SspMI CTAG 2 cut(s) 156, 188
StyD4I CCNGG 1 cut(s) 468
TaiI ACGT 2 cut(s) 30, 422
TaqI TCGA 2 cut(s) 101, 357
TfiI GAWTC 1 cut(s) 543
Tru1I TTAA 2 cut(s) 378, 480
Tru9I TTAA 2 cut(s) 378, 480
TseFI GTSAC 1 cut(s) 490
TseI GCWGC 2 cut(s) 85, 203
Tsp45I GTSAC 1 cut(s) 490
TspDTI ATGAA 4 cut(s) 17, 264, 273, 525
TspGWI ACGGA 1 cut(s) 135
Tth111I GACNNNGTC 1 cut(s) 95
VpaK11BI GGWCC 2 cut(s) 152, 236
XspI CTAG 2 cut(s) 156, 188
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.