Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007928

Physical Location & Seq

Genomic Coordinates Reverse (-)

14739701 .. 14741528

Gene Structure 1828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G173000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAGGCTTGTTGCACTTGCCAGATCTTTTCGTGCCCGGCCCACTCTCCCTGAAACAACTGGTCCTTTGCAGTTTCGTTGCTTCCAACCTGATTTTGCTCCAAGGGATCCCGATGCCAAGCCAAAAAAATACAAATATCCGGCATTCTATGATCCATATGGCCCTAGACCTCCACCCTCAGATAAAATCATTCAGCTCGCCGAGCGAATTGCAGCACTGGCCCCTGAAGAACGCTGCCAACTTGGTCCTACTCTTGGTGAGAGGCTAAGGCTTCCCAAGTTGCAGCCCATATCAACAGAAGGCTTGGACTTGGGTTCACAGGGAGGGCCAGCTGGTGCGTCAAAGGCTGAAGAGAAGAAGGTGGAAAAAACAGCGTTTGATGTGAAATTGGAGAAGTTTGATACAGCTGCAAAGATCAAGGTAATCAAGGAAGTCAGGACCTTTACCAGTCTGGGATTAAAGGAGGCTAAGGATCTCGTTGAAAAGGTACCCTGTGTCCTTAAACAAGGGGTTACCAAAGAGGAAGCAAATGACATAATTGAGAAAATAAAGGCTGCTGGAGGAGTTGCTGTTATGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12

Protein Analysis

194

Amino Acids

21.23

Weight (kDa)

9.26

Isoelectric Point (pI)

36.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03130 AT3G06040 AT3G06040 AT3G06040
fragaria_vesca	FvH4_5g05340 FvH4_5g05340
malus_domestica	MD06G1173500.v1.1 MD14G1180000.v1.1
prunus_persica	Prupe.5G173000_v2.0.a1 Prupe.5G173000_v2.0.a1 Prupe.5G173000_v2.0.a1
pyrus_communis	pycom06g15470 pycom14g14980
rosa_chinensis	RchiOBHm_Chr7g0193501
rosa_laevigata	RLG00000004266
rosa_multiflora	Rmu_co8169084.1_g000001 Rmu_sc0011510.1_g000006
rosa_roxburghii	Rroxscaffold_3G00262050
rosa_rugosa	Rorug07G0009800
rosa_samantha	Rh7AG136600 Rh7BG136900 Rh7CG140300 Rh7DG138100
rosa_wichuraiana	Rw7G011640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	487
AccB1I	GGYRCC	1 cut(s)	487
AclWI	GGATC	4 cut(s)	101, 114, 146, 480
AcuI	CTGAAG	2 cut(s)	246, 369
AfaI	GTAC	1 cut(s)	489
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	1 cut(s)	482
AluBI	AGCT	3 cut(s)	196, 332, 407
AluI	AGCT	3 cut(s)	196, 332, 407
AlwI	GGATC	4 cut(s)	101, 114, 146, 480
AoxI	GGCC	4 cut(s)	38, 160, 219, 326
ApeKI	GCWGC	5 cut(s)	212, 234, 283, 407, 554
Asp718I	GGTACC	1 cut(s)	487
AspS9I	GGNCC	7 cut(s)	39, 62, 161, 220, 245, 326, 438
AsuC2I	CCSGG	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	269
AvaII	GGWCC	3 cut(s)	62, 245, 438
BaeGI	GKGCMC	1 cut(s)	37
BamHI	GGATCC	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	487
BbvI	GCAGC	5 cut(s)	221, 224, 295, 394, 541
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BcnI	CCSGG	1 cut(s)	37
BfaI	CTAG	1 cut(s)	165
BglII	AGATCT	1 cut(s)	23
BisI	GCNGC	5 cut(s)	213, 235, 284, 408, 555
BlsI	GCNGC	5 cut(s)	214, 236, 285, 409, 556
Bme1390I	CCNGG	1 cut(s)	37
Bme18I	GGWCC	3 cut(s)	62, 245, 438
BmgT120I	GGNCC	7 cut(s)	39, 62, 161, 220, 245, 326, 438
BmiI	GGNNCC	3 cut(s)	108, 222, 489
BmrFI	CCNGG	1 cut(s)	37
BmsI	GCATC	1 cut(s)	103
BpmI	CTGGAG	1 cut(s)	579
Bpu10I	CCTNAGC	2 cut(s)	266, 468
BpuMI	CCSGG	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	101
BsaXI	ACNNNNNCTCC	1 cut(s)	555
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse1I	ACTGG	3 cut(s)	64, 222, 447
BseDI	CCNNGG	1 cut(s)	101
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	3 cut(s)	64, 222, 447
BseRI	GAGGAG	1 cut(s)	576
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	5 cut(s)	221, 224, 295, 394, 541
BshFI	GGCC	4 cut(s)	40, 162, 221, 328
BshNI	GGYRCC	1 cut(s)	487
BsiSI	CCGG	2 cut(s)	37, 140
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	143
BsnI	GGCC	4 cut(s)	40, 162, 221, 328
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	5 cut(s)	23, 106, 151, 414, 472
BspANI	GGCC	4 cut(s)	40, 162, 221, 328
BspCNI	CTCAG	1 cut(s)	191
BspLI	GGNNCC	3 cut(s)	108, 222, 489
BspPI	GGATC	4 cut(s)	101, 114, 146, 480
BspT107I	GGYRCC	1 cut(s)	487
BsrI	ACTGG	3 cut(s)	64, 222, 447
BssECI	CCNNGG	1 cut(s)	101
BssMI	GATC	5 cut(s)	23, 106, 151, 414, 472
BssT1I	CCWWGG	1 cut(s)	101
Bst6I	CTCTTC	1 cut(s)	345
BstC8I	GCNNGC	2 cut(s)	198, 330
BstDEI	CTNAG	3 cut(s)	178, 266, 468
BstEII	GGTNACC	1 cut(s)	511
BstKTI	GATC	5 cut(s)	26, 109, 154, 417, 475
BstMBI	GATC	5 cut(s)	23, 106, 151, 414, 472
BstMWI	GCNNNNNNNGC	3 cut(s)	202, 218, 344
BstPI	GGTNACC	1 cut(s)	511
BstSCI	CCNGG	1 cut(s)	35
BstSLI	GKGCMC	1 cut(s)	37
BstV1I	GCAGC	5 cut(s)	221, 224, 295, 394, 541
BstX2I	RGATCY	3 cut(s)	23, 106, 472
BstYI	RGATCY	3 cut(s)	23, 106, 472
BsuRI	GGCC	4 cut(s)	40, 162, 221, 328
BtsIMutI	CAGTG	1 cut(s)	215
Cac8I	GCNNGC	2 cut(s)	198, 330
Cfr13I	GGNCC	7 cut(s)	39, 62, 161, 220, 245, 326, 438
CseI	GACGC	1 cut(s)	327
Csp6I	GTAC	1 cut(s)	488
CviQI	GTAC	1 cut(s)	488
DdeI	CTNAG	3 cut(s)	178, 266, 468
DpnI	GATC	5 cut(s)	25, 108, 153, 416, 474
DpnII	GATC	5 cut(s)	23, 106, 151, 414, 472
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco130I	CCWWGG	1 cut(s)	101
Eco47I	GGWCC	3 cut(s)	62, 245, 438
Eco57I	CTGAAG	2 cut(s)	246, 369
Eco91I	GGTNACC	1 cut(s)	511
EcoO109I	RGGNCCY	1 cut(s)	438
EcoO65I	GGTNACC	1 cut(s)	511
EcoT14I	CCWWGG	1 cut(s)	101
ErhI	CCWWGG	1 cut(s)	101
FaiI	YATR	6 cut(s)	150, 157, 159, 290, 536, 575
FauNDI	CATATG	1 cut(s)	157
Fnu4HI	GCNGC	5 cut(s)	213, 235, 284, 408, 555
Fsp4HI	GCNGC	5 cut(s)	213, 235, 284, 408, 555
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	5 cut(s)	213, 235, 284, 408, 555
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	4 cut(s)	40, 162, 221, 328
HapII	CCGG	2 cut(s)	37, 140
HgaI	GACGC	1 cut(s)	327
HpaII	CCGG	2 cut(s)	37, 140
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	1 cut(s)	317
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	2 cut(s)	110, 436
Hpy8I	GTNNAC	1 cut(s)	317
HpyAV	CCTTC	2 cut(s)	293, 352
HpyCH4V	TGCA	5 cut(s)	14, 70, 212, 283, 410
HpyF10VI	GCNNNNNNNGC	3 cut(s)	202, 218, 344
HpyF3I	CTNAG	3 cut(s)	178, 266, 468
KpnI	GGTACC	1 cut(s)	491
Kzo9I	GATC	5 cut(s)	23, 106, 151, 414, 472
LmnI	GCTCC	1 cut(s)	103
Lsp1109I	GCAGC	5 cut(s)	221, 224, 295, 394, 541
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	511
MalI	GATC	5 cut(s)	25, 108, 153, 416, 474
MboI	GATC	5 cut(s)	23, 106, 151, 414, 472
MboII	GAAGA	3 cut(s)	239, 362, 367
MflI	RGATCY	3 cut(s)	23, 106, 472
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	3 cut(s)	207, 386, 537
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	7 cut(s)	180, 187, 255, 317, 457, 514, 554
MseI	TTAA	2 cut(s)	458, 501
MspA1I	CMGCKG	2 cut(s)	332, 407
MspI	CCGG	2 cut(s)	37, 140
MspR9I	CCNGG	1 cut(s)	37
Mva1269I	GAATGC	1 cut(s)	143
MwoI	GCNNNNNNNGC	3 cut(s)	202, 218, 344
NciI	CCSGG	1 cut(s)	37
NdeI	CATATG	1 cut(s)	157
NdeII	GATC	5 cut(s)	23, 106, 151, 414, 472
NlaIV	GGNNCC	3 cut(s)	108, 222, 489
NmeAIII	GCCGAG	1 cut(s)	226
PctI	GAATGC	1 cut(s)	143
PkrI	GCNGC	5 cut(s)	214, 236, 285, 409, 556
PpuMI	RGGWCCY	1 cut(s)	438
Psp5II	RGGWCCY	1 cut(s)	438
PspEI	GGTNACC	1 cut(s)	511
PspN4I	GGNNCC	3 cut(s)	108, 222, 489
PspPI	GGNCC	7 cut(s)	39, 62, 161, 220, 245, 326, 438
PspPPI	RGGWCCY	1 cut(s)	438
PsuI	RGATCY	3 cut(s)	23, 106, 472
PvuII	CAGCTG	2 cut(s)	332, 407
RsaI	GTAC	1 cut(s)	489
RsaNI	GTAC	1 cut(s)	488
SaqAI	TTAA	2 cut(s)	458, 501
SatI	GCNGC	5 cut(s)	213, 235, 284, 408, 555
Sau3AI	GATC	5 cut(s)	23, 106, 151, 414, 472
Sau96I	GGNCC	7 cut(s)	39, 62, 161, 220, 245, 326, 438
ScrFI	CCNGG	1 cut(s)	37
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	9 cut(s)	91, 172, 198, 334, 363, 409, 423, 443, 489
SfaNI	GCATC	1 cut(s)	103
SinI	GGWCC	3 cut(s)	62, 245, 438
Sse9I	AATT	3 cut(s)	207, 386, 537
SspMI	CTAG	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	35
StyI	CCWWGG	1 cut(s)	101
TasI	AATT	3 cut(s)	207, 386, 537
Tru1I	TTAA	2 cut(s)	458, 501
Tru9I	TTAA	2 cut(s)	458, 501
TscAI	CASTG	1 cut(s)	222
TseI	GCWGC	5 cut(s)	212, 234, 283, 407, 554
TspRI	CASTG	1 cut(s)	222
VpaK11BI	GGWCC	3 cut(s)	62, 245, 438
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.