Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007928

Physical Location & Seq

Genomic Coordinates Reverse (-)

10207223 .. 10207804

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG136900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAGGATCATTGCAGTTGCCAGATCTTTTCGTGCTCGTCCCGCACTGCCTAAAGCAACCGGTCATTTGCAAGTTCGTGCGTTCCAACCCGATTTTGTTCCGAGGGATCCCAAGGCCAAGCCGATACGCTACAAATATCCGGAAGTCTATAACCCCTATGGCCCTAGACCCCCACCCTCGGATAAAATTGTTCAGCTTGCTGAAAGAATTGCAGCGCTGGCCCCTGCAGAACGGTGTCAACTTGGTCCTGCACTCGTGGAGAAGCTAAAGCTTCCGCAGCTGCAGCCCATATCAACAGAAGGCATGGACTTAGGTCCACAGGGAGGGGCTGCTGGTGGGTCAAAGGCTGAGGAGAAGAAGGTTGAGAAAACTGCTTTTGATGTCAAATTGGAGAAGTTTGAAGCGTCTGCAAAAATCAAGGTGATCAAAGAAGTGCGGGCTTTTACCAGTCTCGGATTGAAGGAGGCTAAAGAACTTGTTGAGAAGGCACCTTGTGTGCTTAAACAAGGGCTTACCAAAGAGGAAGCAAATGACATGATTGAGAAACTAAAGGCTGCTGGAGGAGTTGCTGTTATGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12

Protein Analysis

193

Amino Acids

21.05

Weight (kDa)

9.58

Isoelectric Point (pI)

31.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L12	PF00542	126 - 189	2.6e-22	Ribosomal protein L7/L12 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03130 AT3G06040 AT3G06040 AT3G06040
fragaria_vesca	FvH4_5g05340 FvH4_5g05340
malus_domestica	MD06G1173500.v1.1 MD14G1180000.v1.1
prunus_persica	Prupe.5G173000_v2.0.a1 Prupe.5G173000_v2.0.a1 Prupe.5G173000_v2.0.a1
pyrus_communis	pycom06g15470 pycom14g14980
rosa_chinensis	RchiOBHm_Chr7g0193501
rosa_laevigata	RLG00000004266
rosa_multiflora	Rmu_co8169084.1_g000001 Rmu_sc0011510.1_g000006
rosa_roxburghii	Rroxscaffold_3G00262050
rosa_rugosa	Rorug07G0009800
rosa_samantha	Rh7AG136600 Rh7BG136900 Rh7CG140300 Rh7DG138100
rosa_wichuraiana	Rw7G011640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	487
AccIII	TCCGGA	1 cut(s)	139
AciI	CCGC	3 cut(s)	42, 275, 436
AclWI	GGATC	3 cut(s)	14, 101, 114
AdeI	CACNNNGTG	1 cut(s)	494
AfeI	AGCGCT	1 cut(s)	216
AfiI	CCNNNNNNNGG	2 cut(s)	178, 323
AgeI	ACCGGT	1 cut(s)	59
AgsI	TTSAA	2 cut(s)	401, 460
AluBI	AGCT	4 cut(s)	196, 265, 271, 280
AluI	AGCT	4 cut(s)	196, 265, 271, 280
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	1 cut(s)	455
AlwI	GGATC	3 cut(s)	14, 101, 114
Aor13HI	TCCGGA	1 cut(s)	139
Aor51HI	AGCGCT	1 cut(s)	216
AoxI	GGCC	3 cut(s)	114, 160, 219
ApeKI	GCWGC	6 cut(s)	212, 277, 280, 283, 329, 554
AsiGI	ACCGGT	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	4 cut(s)	161, 220, 245, 314
AsuHPI	GGTGA	1 cut(s)	433
AvaII	GGWCC	2 cut(s)	245, 314
BamHI	GGATCC	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	487
BauI	CACGAG	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	37
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	6 cut(s)	224, 267, 289, 295, 316, 541
BclI	TGATCA	1 cut(s)	423
BcoDI	GTCTC	1 cut(s)	455
BfaI	CTAG	1 cut(s)	165
BfmI	CTRYAG	2 cut(s)	225, 281
BfoI	RGCGCY	1 cut(s)	218
BglII	AGATCT	1 cut(s)	23
BisI	GCNGC	6 cut(s)	213, 278, 281, 284, 330, 555
BlsI	GCNGC	6 cut(s)	214, 279, 282, 285, 331, 556
Bme18I	GGWCC	2 cut(s)	245, 314
BmgT120I	GGNCC	4 cut(s)	161, 220, 245, 314
BmiI	GGNNCC	3 cut(s)	108, 222, 489
BoxI	GACNNNNGTC	1 cut(s)	312
BpmI	CTGGAG	1 cut(s)	579
Bpu10I	CCTNAGC	1 cut(s)	348
BsaJI	CCNNGG	3 cut(s)	101, 111, 177
BsaWI	WCCGGW	2 cut(s)	59, 139
BsaXI	ACNNNNNCTCC	1 cut(s)	555
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 323
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	1 cut(s)	447
Bse3DI	GCAATG	1 cut(s)	9
BseAI	TCCGGA	1 cut(s)	139
BseDI	CCNNGG	3 cut(s)	101, 111, 177
BseLI	CCNNNNNNNGG	2 cut(s)	178, 323
BseMI	GCAATG	1 cut(s)	9
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	1 cut(s)	447
BseRI	GAGGAG	2 cut(s)	365, 576
BseXI	GCAGC	6 cut(s)	224, 267, 289, 295, 316, 541
BsgI	GTGCAG	1 cut(s)	234
BshFI	GGCC	3 cut(s)	116, 162, 221
BshNI	GGYRCC	1 cut(s)	487
BshTI	ACCGGT	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	60, 140
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	2 cut(s)	178, 323
BsmAI	GTCTC	1 cut(s)	455
BsmFI	GGGAC	1 cut(s)	24
BsnI	GGCC	3 cut(s)	116, 162, 221
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp13I	TCCGGA	1 cut(s)	139
Bsp143I	GATC	4 cut(s)	6, 23, 106, 423
BspACI	CCGC	3 cut(s)	42, 275, 436
BspANI	GGCC	3 cut(s)	116, 162, 221
BspCNI	CTCAG	1 cut(s)	340
BspEI	TCCGGA	1 cut(s)	139
BspLI	GGNNCC	3 cut(s)	108, 222, 489
BspMAI	CTGCAG	2 cut(s)	229, 285
BspPI	GGATC	3 cut(s)	14, 101, 114
BspT107I	GGYRCC	1 cut(s)	487
BsrDI	GCAATG	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	447
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	3 cut(s)	101, 111, 177
BssMI	GATC	4 cut(s)	6, 23, 106, 423
BssSI	CACGAG	1 cut(s)	254
BssT1I	CCWWGG	1 cut(s)	111
Bst2BI	CACGAG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	234
BstC8I	GCNNGC	3 cut(s)	198, 219, 438
BstDEI	CTNAG	2 cut(s)	310, 348
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	4 cut(s)	9, 26, 109, 426
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	4 cut(s)	6, 23, 106, 423
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 218, 277, 283
BstPAI	GACNNNNGTC	1 cut(s)	312
BstSFI	CTRYAG	2 cut(s)	225, 281
BstV1I	GCAGC	6 cut(s)	224, 267, 289, 295, 316, 541
BstX2I	RGATCY	2 cut(s)	23, 106
BstYI	RGATCY	2 cut(s)	23, 106
BsuRI	GGCC	3 cut(s)	116, 162, 221
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	44
Cac8I	GCNNGC	3 cut(s)	198, 219, 438
CfoI	GCGC	1 cut(s)	217
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	4 cut(s)	161, 220, 245, 314
CseI	GACGC	1 cut(s)	393
CspAI	ACCGGT	1 cut(s)	59
CviAII	CATG	2 cut(s)	304, 535
DdeI	CTNAG	2 cut(s)	310, 348
DpnI	GATC	4 cut(s)	8, 25, 108, 425
DpnII	GATC	4 cut(s)	6, 23, 106, 423
DraIII	CACNNNGTG	1 cut(s)	494
Eco130I	CCWWGG	1 cut(s)	111
Eco47I	GGWCC	2 cut(s)	245, 314
Eco47III	AGCGCT	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	2 cut(s)	307, 538
FaiI	YATR	6 cut(s)	150, 159, 290, 305, 536, 575
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	2 cut(s)	303, 534
FauI	CCCGC	2 cut(s)	49, 429
FbaI	TGATCA	1 cut(s)	423
Fnu4HI	GCNGC	6 cut(s)	213, 278, 281, 284, 330, 555
Fsp4HI	GCNGC	6 cut(s)	213, 278, 281, 284, 330, 555
FspBI	CTAG	1 cut(s)	165
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	6 cut(s)	213, 278, 281, 284, 330, 555
GsuI	CTGGAG	1 cut(s)	579
HaeII	RGCGCY	1 cut(s)	218
HaeIII	GGCC	3 cut(s)	116, 162, 221
HapII	CCGG	2 cut(s)	60, 140
HgaI	GACGC	1 cut(s)	393
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	2 cut(s)	307, 538
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HincII	GTYRAC	1 cut(s)	239
HindII	GTYRAC	1 cut(s)	239
HindIII	AAGCTT	1 cut(s)	269
HpaII	CCGG	2 cut(s)	60, 140
HphI	GGTGA	1 cut(s)	433
Hpy166II	GTNNAC	2 cut(s)	239, 317
Hpy188I	TCNGA	3 cut(s)	102, 181, 455
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	2 cut(s)	239, 317
HpyAV	CCTTC	4 cut(s)	293, 352, 454, 478
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4V	TGCA	7 cut(s)	14, 70, 212, 227, 251, 283, 410
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 218, 277, 283
HpyF3I	CTNAG	2 cut(s)	310, 348
Hsp92II	CATG	2 cut(s)	307, 538
HspAI	GCGC	1 cut(s)	215
Kpn2I	TCCGGA	1 cut(s)	139
Ksp22I	TGATCA	1 cut(s)	423
Kzo9I	GATC	4 cut(s)	6, 23, 106, 423
Lsp1109I	GCAGC	6 cut(s)	224, 267, 289, 295, 316, 541
MaeI	CTAG	1 cut(s)	165
MalI	GATC	4 cut(s)	8, 25, 108, 425
MboI	GATC	4 cut(s)	6, 23, 106, 423
MboII	GAAGA	1 cut(s)	367
MflI	RGATCY	2 cut(s)	23, 106
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	3 cut(s)	186, 207, 386
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	7 cut(s)	96, 187, 317, 343, 457, 514, 554
MroI	TCCGGA	1 cut(s)	139
MseI	TTAA	1 cut(s)	501
MspA1I	CMGCKG	1 cut(s)	280
MspI	CCGG	2 cut(s)	60, 140
MwoI	GCNNNNNNNGC	4 cut(s)	41, 218, 277, 283
NdeII	GATC	4 cut(s)	6, 23, 106, 423
NlaIII	CATG	2 cut(s)	307, 538
NlaIV	GGNNCC	3 cut(s)	108, 222, 489
PinAI	ACCGGT	1 cut(s)	59
PkrI	GCNGC	6 cut(s)	214, 279, 282, 285, 331, 556
PshAI	GACNNNNGTC	1 cut(s)	312
PspN4I	GGNNCC	3 cut(s)	108, 222, 489
PspPI	GGNCC	4 cut(s)	161, 220, 245, 314
PstI	CTGCAG	2 cut(s)	229, 285
PsuI	RGATCY	2 cut(s)	23, 106
PvuII	CAGCTG	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	6 cut(s)	213, 278, 281, 284, 330, 555
Sau3AI	GATC	4 cut(s)	6, 23, 106, 423
Sau96I	GGNCC	4 cut(s)	161, 220, 245, 314
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	8 cut(s)	198, 267, 273, 282, 316, 363, 423, 493
SfcI	CTRYAG	2 cut(s)	225, 281
SinI	GGWCC	2 cut(s)	245, 314
Sse9I	AATT	3 cut(s)	186, 207, 386
SsiI	CCGC	3 cut(s)	42, 275, 436
SspMI	CTAG	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	234
TasI	AATT	3 cut(s)	186, 207, 386
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	1 cut(s)	51
TseI	GCWGC	6 cut(s)	212, 277, 280, 283, 329, 554
TspRI	CASTG	1 cut(s)	51
VpaK11BI	GGWCC	2 cut(s)	245, 314
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.