Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007347

Physical Location & Seq

Genomic Coordinates Forward (+)

2229539 .. 2232149

Gene Structure 2611 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G05830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGTCCGGCGAAGGAGACACGACCCTCAAAGCTATCTGTTACAAGCCTGGCTCTCTCCAGTTACTCGATCAGAGGAAGCTTCCTTTAGAGACTATTTACTTAGAGATTCGTGATGCTTCAGATGGATGGAGTGCTATTCAGGAAATGGTTGTACGTGGTGCTCCTGCTATAGCTATTGCTGCTGCTCTTTCTTTGGCTGTTGAAGTTTTCAACTTTCATGGTTTTGATGGATCAGCTTCAGATGCTGTTGCTTTTCTTGAGAACAAGTTGGATTATTTAGTGTCAAGCCGTCCAACAGCAGTTAATCTTGCAGATGCTGCTTTGAAACTTAAACATGTTATAGCAAAGGCCTTGGCTACTGCCACCGAAGCCAAATCCATTTTCAAGGCATATATTGAAGCTAGTGAGGATATGCTTGAAGATGATGTTGTTTCAAACAAAGCTATAGGAAACTTTGGTTTAAGCTTGTTGAGGCAACAAGCCAAGAATCCTGATAAGCTTTCTGTTTTGACCCATTGCAACACTGGCAGCCTTGCTACCGCCGGATATGGTACTGCCCTCGGTGTCATCCGTGCACTCCATACTCAAGGAATCTTAGAAAGAGCATACTGCACAGAAACTCGTCCATTTAATCAAGGATCGAGGCTTACAGCGTTTGAGTTGGTGCATGAGAAAATCCCTGCAACTCTCATTGCAGACTCAGCTGCAGCTGCACTGATGAAAGATGGTCGTGTTGATGGTGTCATCGTTGGAGCTGATCGTGTGGCTTCAAATGGCGATACTGCTAACAAGATTGGGACTTACAGTCTCGCCTTGTGCGCAAAACATCACGGGATCCCATTTTATGTTGCTGCACCTCTTACCTCAGTTGATCTGTCACTTTCATCCGGGAAAGAAATCGTGATAGAGGAAAGATCTCCAAAGGAGTTGATGCACACACACGGAGGACTTGGTGAACGCATTGCAGCACCAGGGATCTCAGTTTGGAACCCAGCTTTTGATATGACTCCAGCAGAGCTGATTGCAGGAATCATAACCGAGAAAGGGGTCATAACAAAGAATGGCAATGATACATTTGACATAAGCAGCTTTGCCAAGAAGATAACAGGAAACTCATCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000302 GO:0003674 GO:0003824 GO:0005575 GO:0005911 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009506 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017144 GO:0019509 GO:0019752 GO:0030054 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0046523 GO:0050896 GO:0051716 GO:0055044 GO:0070887 GO:0071241 GO:0071248 GO:0071265 GO:0071267 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0097366 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

IF-2B

Protein Analysis

374

Amino Acids

39.61

Weight (kDa)

5.88

Isoelectric Point (pI)

26.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	3 - 304	3.4e-77	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05830 AT2G05830 AT2G05830 AT2G05830
fragaria_vesca	FvH4_1g08940
malus_domestica	MD02G1094700.v1.1 MD15G1219600.v1.1
prunus_persica	Prupe.7G196300_v2.0.a1 Prupe.7G196300_v2.0.a1
pyrus_communis	pycom02g07490 pycom15g19470
rosa_chinensis	RchiOBHm_Chr2g0095391
rosa_laevigata	RLG00000016561
rosa_multiflora	Rmu_ssc0000183.1_g000040 Rmu_ssc0000183.1_g000041 Rmu_ssc0000183.1_g000042
rosa_roxburghii	Rroxscaffold_2G00146410
rosa_rugosa	Rorug02G0050400
rosa_samantha	Rh2AG098600 Rh2BG099800 Rh2CG101800 Rh2CG105700 Rh2DG099400
rosa_wichuraiana	Rw2G007440 Rw2G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	820
AciI	CCGC	1 cut(s)	540
AclWI	GGATC	5 cut(s)	238, 646, 829, 842, 983
AcuI	CTGAAG	2 cut(s)	102, 222
AfaI	GTAC	2 cut(s)	153, 553
AfiI	CCNNNNNNNGG	1 cut(s)	1044
AflIII	ACRYGT	1 cut(s)	334
AgsI	TTSAA	8 cut(s)	203, 211, 325, 385, 398, 419, 435, 771
AhdI	GACNNNNNGTC	1 cut(s)	804
AjnI	CCWGG	2 cut(s)	46, 970
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
Alw21I	GWGCWC	2 cut(s)	163, 577
Alw26I	GTCTC	3 cut(s)	9, 83, 812
Alw44I	GTGCAC	1 cut(s)	573
AlwI	GGATC	5 cut(s)	238, 646, 829, 842, 983
AlwNI	CAGNNNCTG	2 cut(s)	245, 317
AoxI	GGCC	1 cut(s)	348
ApaLI	GTGCAC	1 cut(s)	573
AspLEI	GCGC	1 cut(s)	821
AsuC2I	CCSGG	1 cut(s)	889
AsuHPI	GGTGA	1 cut(s)	965
BaeGI	GKGCMC	1 cut(s)	577
BamHI	GGATCC	1 cut(s)	834
Bbv12I	GWGCWC	2 cut(s)	163, 577
BccI	CCATC	5 cut(s)	116, 120, 221, 719, 731
BceAI	ACGGC	1 cut(s)	273
BciT130I	CCWGG	2 cut(s)	48, 972
BcnI	CCSGG	1 cut(s)	889
BcoDI	GTCTC	3 cut(s)	9, 83, 812
BfaI	CTAG	1 cut(s)	402
BfmI	CTRYAG	3 cut(s)	168, 444, 705
BglII	AGATCT	1 cut(s)	914
Bme1390I	CCNGG	3 cut(s)	48, 889, 972
BmeRI	GACNNNNNGTC	1 cut(s)	804
BmiI	GGNNCC	2 cut(s)	836, 989
BmrFI	CCNGG	3 cut(s)	48, 889, 972
BmsI	GCATC	4 cut(s)	103, 232, 304, 921
BpmI	CTGGAG	2 cut(s)	41, 993
BpuEI	CTTGAG	2 cut(s)	278, 570
BpuMI	CCSGG	1 cut(s)	889
BsaAI	YACGTR	1 cut(s)	155
BsaJI	CCNNGG	3 cut(s)	351, 559, 971
Bsc4I	CCNNNNNNNGG	1 cut(s)	1044
Bse1I	ACTGG	2 cut(s)	58, 529
Bse3DI	GCAATG	4 cut(s)	514, 690, 960, 1072
BseBI	CCWGG	2 cut(s)	48, 972
BseDI	CCNNGG	3 cut(s)	351, 559, 971
BseGI	GGATG	3 cut(s)	131, 567, 884
BseLI	CCNNNNNNNGG	1 cut(s)	1044
BseMI	GCAATG	4 cut(s)	514, 690, 960, 1072
BseMII	CTCAG	3 cut(s)	714, 879, 993
BseNI	ACTGG	2 cut(s)	58, 529
BseSI	GKGCMC	1 cut(s)	577
BseYI	CCCAGC	1 cut(s)	991
BsgI	GTGCAG	3 cut(s)	595, 696, 837
BshFI	GGCC	1 cut(s)	350
BsiHKAI	GWGCWC	2 cut(s)	163, 577
BsiSI	CCGG	3 cut(s)	6, 543, 888
BslFI	GGGAC	1 cut(s)	811
BslI	CCNNNNNNNGG	1 cut(s)	1044
BsmAI	GTCTC	3 cut(s)	9, 83, 812
BsmFI	GGGAC	1 cut(s)	811
BsnI	GGCC	1 cut(s)	350
Bsp1286I	GDGCHC	2 cut(s)	163, 577
Bsp143I	GATC	8 cut(s)	67, 230, 638, 757, 834, 871, 914, 975
BspACI	CCGC	1 cut(s)	540
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	3 cut(s)	713, 878, 992
BspLI	GGNNCC	2 cut(s)	836, 989
BspMAI	CTGCAG	1 cut(s)	709
BspPI	GGATC	5 cut(s)	238, 646, 829, 842, 983
BsrDI	GCAATG	4 cut(s)	514, 690, 960, 1072
BsrI	ACTGG	2 cut(s)	58, 529
BssECI	CCNNGG	3 cut(s)	351, 559, 971
BssMI	GATC	8 cut(s)	67, 230, 638, 757, 834, 871, 914, 975
BssT1I	CCWWGG	1 cut(s)	351
Bst2UI	CCWGG	2 cut(s)	48, 972
Bst4CI	ACNGT	1 cut(s)	806
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstBAI	YACGTR	1 cut(s)	155
BstDEI	CTNAG	5 cut(s)	100, 595, 700, 865, 979
BstF5I	GGATG	3 cut(s)	131, 567, 884
BstHHI	GCGC	1 cut(s)	821
BstKTI	GATC	8 cut(s)	70, 233, 641, 760, 837, 874, 917, 978
BstMAI	GTCTC	3 cut(s)	9, 83, 812
BstMBI	GATC	8 cut(s)	67, 230, 638, 757, 834, 871, 914, 975
BstMWI	GCNNNNNNNGC	8 cut(s)	179, 242, 317, 368, 525, 701, 710, 818
BstNI	CCWGG	2 cut(s)	48, 972
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	3 cut(s)	46, 887, 970
BstSFI	CTRYAG	3 cut(s)	168, 444, 705
BstSLI	GKGCMC	1 cut(s)	577
BstX2I	RGATCY	3 cut(s)	834, 914, 975
BstYI	RGATCY	3 cut(s)	834, 914, 975
BsuRI	GGCC	1 cut(s)	350
BtsCI	GGATG	3 cut(s)	131, 567, 884
BtsIMutI	CAGTG	2 cut(s)	522, 713
CaiI	CAGNNNCTG	2 cut(s)	245, 317
CfoI	GCGC	1 cut(s)	821
Csp6I	GTAC	2 cut(s)	152, 552
CviAII	CATG	3 cut(s)	218, 335, 668
CviQI	GTAC	2 cut(s)	152, 552
DdeI	CTNAG	5 cut(s)	100, 595, 700, 865, 979
DpnI	GATC	8 cut(s)	69, 232, 640, 759, 836, 873, 916, 977
DpnII	GATC	8 cut(s)	67, 230, 638, 757, 834, 871, 914, 975
DriI	GACNNNNNGTC	1 cut(s)	804
Eam1105I	GACNNNNNGTC	1 cut(s)	804
Eco130I	CCWWGG	1 cut(s)	351
Eco147I	AGGCCT	1 cut(s)	350
Eco57I	CTGAAG	2 cut(s)	102, 222
EcoRII	CCWGG	2 cut(s)	46, 970
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	3 cut(s)	221, 338, 671
FaqI	GGGAC	1 cut(s)	811
FatI	CATG	3 cut(s)	217, 334, 667
FokI	GGATG	3 cut(s)	138, 554, 871
FspBI	CTAG	1 cut(s)	402
FspI	TGCGCA	1 cut(s)	820
GlaI	GCGC	1 cut(s)	820
GsaI	CCCAGC	1 cut(s)	995
GsuI	CTGGAG	2 cut(s)	41, 993
HaeIII	GGCC	1 cut(s)	350
HapII	CCGG	3 cut(s)	6, 543, 888
HhaI	GCGC	1 cut(s)	821
Hin1II	CATG	3 cut(s)	221, 338, 671
Hin6I	GCGC	1 cut(s)	819
HinP1I	GCGC	1 cut(s)	819
HindIII	AAGCTT	3 cut(s)	77, 463, 497
HinfI	GANTC	6 cut(s)	106, 487, 591, 698, 1006, 1029
HpaII	CCGG	3 cut(s)	6, 543, 888
HphI	GGTGA	1 cut(s)	965
Hpy166II	GTNNAC	2 cut(s)	575, 956
Hpy188I	TCNGA	3 cut(s)	72, 121, 241
Hpy188III	TCNNGA	5 cut(s)	110, 140, 257, 491, 901
Hpy8I	GTNNAC	2 cut(s)	575, 956
HpyAV	CCTTC	1 cut(s)	5
HpyCH4III	ACNGT	1 cut(s)	806
HpyCH4IV	ACGT	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	8 cut(s)	179, 242, 317, 368, 525, 701, 710, 818
HpyF3I	CTNAG	5 cut(s)	100, 595, 700, 865, 979
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	3 cut(s)	221, 338, 671
HspAI	GCGC	1 cut(s)	819
Kzo9I	GATC	8 cut(s)	67, 230, 638, 757, 834, 871, 914, 975
LmnI	GCTCC	2 cut(s)	166, 752
LweI	GCATC	4 cut(s)	103, 232, 304, 921
MaeI	CTAG	1 cut(s)	402
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	3 cut(s)	38, 60, 876
MalI	GATC	8 cut(s)	69, 232, 640, 759, 836, 873, 916, 977
MboI	GATC	8 cut(s)	67, 230, 638, 757, 834, 871, 914, 975
MboII	GAAGA	2 cut(s)	431, 1111
MflI	RGATCY	3 cut(s)	834, 914, 975
MhlI	GDGCHC	2 cut(s)	163, 577
MlyI	GAGTC	2 cut(s)	692, 1000
MmeI	TCCRAC	3 cut(s)	249, 317, 730
MseI	TTAA	4 cut(s)	303, 330, 461, 630
MspA1I	CMGCKG	2 cut(s)	704, 710
MspI	CCGG	3 cut(s)	6, 543, 888
MspR9I	CCNGG	3 cut(s)	48, 889, 972
MvaI	CCWGG	2 cut(s)	48, 972
MwoI	GCNNNNNNNGC	8 cut(s)	179, 242, 317, 368, 525, 701, 710, 818
NciI	CCSGG	1 cut(s)	889
NdeII	GATC	8 cut(s)	67, 230, 638, 757, 834, 871, 914, 975
NlaIII	CATG	3 cut(s)	221, 338, 671
NlaIV	GGNNCC	2 cut(s)	836, 989
NmuCI	GTSAC	1 cut(s)	876
NsbI	TGCGCA	1 cut(s)	820
NspI	RCATGY	1 cut(s)	338
PceI	AGGCCT	1 cut(s)	350
PciI	ACATGT	1 cut(s)	334
PfeI	GAWTC	4 cut(s)	106, 487, 591, 1029
PfoI	TCCNGGA	1 cut(s)	887
PleI	GAGTC	2 cut(s)	692, 1000
PpsI	GAGTC	2 cut(s)	692, 1000
Ppu21I	YACGTR	1 cut(s)	155
PscI	ACATGT	1 cut(s)	334
Psp6I	CCWGG	2 cut(s)	46, 970
PspFI	CCCAGC	1 cut(s)	991
PspGI	CCWGG	2 cut(s)	46, 970
PspN4I	GGNNCC	2 cut(s)	836, 989
PstI	CTGCAG	1 cut(s)	709
PstNI	CAGNNNCTG	2 cut(s)	245, 317
PsuI	RGATCY	3 cut(s)	834, 914, 975
PvuII	CAGCTG	2 cut(s)	704, 710
RsaI	GTAC	2 cut(s)	153, 553
RsaNI	GTAC	2 cut(s)	152, 552
SaqAI	TTAA	4 cut(s)	303, 330, 461, 630
Sau3AI	GATC	8 cut(s)	67, 230, 638, 757, 834, 871, 914, 975
SchI	GAGTC	2 cut(s)	692, 1000
ScrFI	CCNGG	3 cut(s)	48, 889, 972
SduI	GDGCHC	2 cut(s)	163, 577
SfaNI	GCATC	4 cut(s)	103, 232, 304, 921
SfcI	CTRYAG	3 cut(s)	168, 444, 705
SmlI	CTYRAG	2 cut(s)	257, 585
SmoI	CTYRAG	2 cut(s)	257, 585
SseBI	AGGCCT	1 cut(s)	350
SsiI	CCGC	1 cut(s)	540
SspMI	CTAG	1 cut(s)	402
StuI	AGGCCT	1 cut(s)	350
StyD4I	CCNGG	3 cut(s)	46, 887, 970
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	806
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	2 cut(s)	66, 641
TfiI	GAWTC	4 cut(s)	106, 487, 591, 1029
Tru1I	TTAA	4 cut(s)	303, 330, 461, 630
Tru9I	TTAA	4 cut(s)	303, 330, 461, 630
TscAI	CASTG	2 cut(s)	529, 720
TseFI	GTSAC	1 cut(s)	876
Tsp45I	GTSAC	1 cut(s)	876
TspDTI	ATGAA	3 cut(s)	206, 734, 873
TspGWI	ACGGA	2 cut(s)	560, 957
TspRI	CASTG	2 cut(s)	529, 720
VneI	GTGCAC	1 cut(s)	573
XceI	RCATGY	1 cut(s)	338
XcmI	CCANNNNNNNNNTGG	1 cut(s)	521
XspI	CTAG	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.