Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007347

Physical Location & Seq

Genomic Coordinates Forward (+)

7558210 .. 7565781

Gene Structure 7572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G007730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTTGACATTGTGCTTAGAACAAGCATCCAAACAATTAGTACAATCATTCTTGGCGAATGCTTTCATGACCCAATTGCTTATTGGTTTCAGATACCTGGATCAGAGGATGGAAATGGGGATCTGCCTATTACAAATGATCGTGATCCTGGCATTGAAATTAGAGAACCTTAAGCAAATGATGGAGTGGCAGCTGCTGGTCCAACTTTCAAGGAACTCAGGTGCTAACTGGAGAAGCAAGGTGGGACCAAGGGTAGAGAAATTATTGAAGCAAAATGCAGCTTGGGCAAGTGATTACAAGGCATTACATTCCAGCGATTGGAGGTTTGAAATTTGGAAGGAAATGGGATCACATGGCGATCATATGGTTGTCCTTGCAATGGCTACTTATGGTACTGCTCTTGGTGTTTTATGTTCACTTCATAATGAAGCCGGATCAAGACTCGTAGCATTTGAGTTGGTGCATGATAACATACCTGCCACCCTTATAGCATATTTGGTTGCAATAGGTACCTACAGTCTTGCCGTTGGTGCAAAGTACCAAAACATTCCATATTTTGTGGCTGCACCACTCACTTCTGTCGACTTATCTCTTTCTTATGGAGGAGAGATAGTAATAGAGGAAAGATCCCTAAAGGAATTTTTGAACACTCATGGAGGACTCGGGGAACAAGTTGCTGCATCTGGAATCTCTGTCTGGAACCCAGCTTTTGATGTCACTCCTGCTAGCTTAATATCTGGCATCATAACAGAAAAGGGTGTCATCACAAAAAGGGGGACAGATGCTTTTGACATAAAGGATTTTGTTCAAAAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000302 GO:0003674 GO:0003824 GO:0005575 GO:0005911 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009506 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017144 GO:0019509 GO:0019752 GO:0030054 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0046523 GO:0050896 GO:0051716 GO:0055044 GO:0070887 GO:0071241 GO:0071248 GO:0071265 GO:0071267 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0097366 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

IF-2B

Protein Analysis

272

Amino Acids

30.06

Weight (kDa)

6.31

Isoelectric Point (pI)

26.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	169 - 256	6.9e-22	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05830 AT2G05830 AT2G05830 AT2G05830
fragaria_vesca	FvH4_1g08940
malus_domestica	MD02G1094700.v1.1 MD15G1219600.v1.1
prunus_persica	Prupe.7G196300_v2.0.a1 Prupe.7G196300_v2.0.a1
pyrus_communis	pycom02g07490 pycom15g19470
rosa_chinensis	RchiOBHm_Chr2g0095391
rosa_laevigata	RLG00000016561
rosa_multiflora	Rmu_ssc0000183.1_g000040 Rmu_ssc0000183.1_g000041 Rmu_ssc0000183.1_g000042
rosa_roxburghii	Rroxscaffold_2G00146410
rosa_rugosa	Rorug02G0050400
rosa_samantha	Rh2AG098600 Rh2BG099800 Rh2CG101800 Rh2CG105700 Rh2DG099400
rosa_wichuraiana	Rw2G007440 Rw2G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	484
Acc65I	GGTACC	1 cut(s)	509
AccB1I	GGYRCC	1 cut(s)	509
AccB7I	CCANNNNNTGG	1 cut(s)	318
AccI	GTMKAC	1 cut(s)	582
AclWI	GGATC	6 cut(s)	108, 128, 139, 355, 442, 621
AcsI	RAATTY	2 cut(s)	330, 638
AfaI	GTAC	4 cut(s)	42, 394, 511, 539
AfiI	CCNNNNNNNGG	2 cut(s)	318, 379
AflII	CTTAAG	1 cut(s)	170
AgsI	TTSAA	6 cut(s)	157, 210, 268, 329, 646, 809
AjnI	CCWGG	2 cut(s)	96, 147
AluBI	AGCT	4 cut(s)	193, 281, 707, 729
AluI	AGCT	4 cut(s)	193, 281, 707, 729
AlwI	GGATC	6 cut(s)	108, 128, 139, 355, 442, 621
AlwNI	CAGNNNCTG	1 cut(s)	196
Ama87I	CYCGRG	1 cut(s)	662
ApeKI	GCWGC	5 cut(s)	190, 193, 278, 563, 677
ApoI	RAATTY	2 cut(s)	330, 638
Asp700I	GAANNNNTTC	1 cut(s)	62
Asp718I	GGTACC	1 cut(s)	509
AspS9I	GGNCC	2 cut(s)	199, 245
AsuNHI	GCTAGC	1 cut(s)	725
AvaI	CYCGRG	1 cut(s)	662
AvaII	GGWCC	2 cut(s)	199, 245
BanI	GGYRCC	1 cut(s)	509
BbvI	GCAGC	5 cut(s)	180, 202, 290, 550, 664
BccI	CCATC	2 cut(s)	103, 175
BceAI	ACGGC	1 cut(s)	509
BciT130I	CCWGG	2 cut(s)	98, 149
BfaI	CTAG	1 cut(s)	726
BfmI	CTRYAG	1 cut(s)	514
BfrI	CTTAAG	1 cut(s)	170
BfuAI	ACCTGC	1 cut(s)	484
BisI	GCNGC	5 cut(s)	191, 194, 279, 564, 678
BlsI	GCNGC	5 cut(s)	192, 195, 280, 565, 679
Bme1390I	CCNGG	2 cut(s)	98, 149
Bme18I	GGWCC	2 cut(s)	199, 245
BmeT110I	CYCGRG	1 cut(s)	662
BmgT120I	GGNCC	2 cut(s)	199, 245
BmiI	GGNNCC	3 cut(s)	246, 511, 701
BmrFI	CCNGG	2 cut(s)	98, 149
BmsI	GCATC	4 cut(s)	35, 689, 750, 772
BmtI	GCTAGC	1 cut(s)	729
BpmI	CTGGAG	1 cut(s)	250
BsaBI	GATNNNNATC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	248
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	2 cut(s)	318, 379
Bse1I	ACTGG	1 cut(s)	233
Bse3DI	GCAATG	1 cut(s)	384
Bse8I	GATNNNNATC	1 cut(s)	143
BseBI	CCWGG	2 cut(s)	98, 149
BseDI	CCNNGG	1 cut(s)	248
BseGI	GGATG	2 cut(s)	26, 114
BseJI	GATNNNNATC	1 cut(s)	143
BseLI	CCNNNNNNNGG	2 cut(s)	318, 379
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	233
BseRI	GAGGAG	1 cut(s)	618
BseXI	GCAGC	5 cut(s)	180, 202, 290, 550, 664
BseYI	CCCAGC	1 cut(s)	703
BsgI	GTGCAG	1 cut(s)	549
BshNI	GGYRCC	1 cut(s)	509
BsiHKCI	CYCGRG	1 cut(s)	662
BsiSI	CCGG	1 cut(s)	432
BslFI	GGGAC	2 cut(s)	258, 790
BslI	CCNNNNNNNGG	2 cut(s)	318, 379
BsmFI	GGGAC	2 cut(s)	258, 790
BsmI	GAATGC	1 cut(s)	64
BsoBI	CYCGRG	1 cut(s)	662
Bsp143I	GATC	8 cut(s)	100, 120, 138, 144, 347, 358, 434, 626
BspCNI	CTCAG	1 cut(s)	230
BspHI	TCATGA	1 cut(s)	66
BspLI	GGNNCC	3 cut(s)	246, 511, 701
BspMI	ACCTGC	1 cut(s)	484
BspOI	GCTAGC	1 cut(s)	729
BspPI	GGATC	6 cut(s)	108, 128, 139, 355, 442, 621
BspT107I	GGYRCC	1 cut(s)	509
BspTI	CTTAAG	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	248
BssMI	GATC	8 cut(s)	100, 120, 138, 144, 347, 358, 434, 626
BssT1I	CCWWGG	1 cut(s)	248
Bst2UI	CCWGG	2 cut(s)	98, 149
Bst4CI	ACNGT	1 cut(s)	518
BstAFI	CTTAAG	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	727
BstDEI	CTNAG	2 cut(s)	16, 217
BstF5I	GGATG	2 cut(s)	26, 114
BstKTI	GATC	8 cut(s)	103, 123, 141, 147, 350, 361, 437, 629
BstMBI	GATC	8 cut(s)	100, 120, 138, 144, 347, 358, 434, 626
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 530
BstNI	CCWGG	2 cut(s)	98, 149
BstSCI	CCNGG	2 cut(s)	96, 147
BstSFI	CTRYAG	1 cut(s)	514
BstV1I	GCAGC	5 cut(s)	180, 202, 290, 550, 664
BstX2I	RGATCY	2 cut(s)	120, 626
BstYI	RGATCY	2 cut(s)	120, 626
BtsCI	GGATG	2 cut(s)	26, 114
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	1 cut(s)	727
CaiI	CAGNNNCTG	1 cut(s)	196
CciI	TCATGA	1 cut(s)	66
Cfr13I	GGNCC	2 cut(s)	199, 245
Csp6I	GTAC	4 cut(s)	41, 393, 510, 538
CviAII	CATG	4 cut(s)	67, 353, 464, 653
CviJI	RGCY	7 cut(s)	193, 281, 383, 431, 563, 707, 729
CviKI_1	RGCY	7 cut(s)	193, 281, 383, 431, 563, 707, 729
CviQI	GTAC	4 cut(s)	41, 393, 510, 538
DdeI	CTNAG	2 cut(s)	16, 217
DpnI	GATC	8 cut(s)	102, 122, 140, 146, 349, 360, 436, 628
DpnII	GATC	8 cut(s)	100, 120, 138, 144, 347, 358, 434, 626
Eco130I	CCWWGG	1 cut(s)	248
Eco47I	GGWCC	2 cut(s)	199, 245
Eco88I	CYCGRG	1 cut(s)	662
EcoRII	CCWGG	2 cut(s)	96, 147
EcoT14I	CCWWGG	1 cut(s)	248
ErhI	CCWWGG	1 cut(s)	248
FaeI	CATG	4 cut(s)	70, 356, 467, 656
FaqI	GGGAC	2 cut(s)	258, 790
FatI	CATG	4 cut(s)	66, 352, 463, 652
FauNDI	CATATG	1 cut(s)	363
FblI	GTMKAC	1 cut(s)	582
Fnu4HI	GCNGC	5 cut(s)	191, 194, 279, 564, 678
FokI	GGATG	2 cut(s)	13, 121
Fsp4HI	GCNGC	5 cut(s)	191, 194, 279, 564, 678
FspBI	CTAG	1 cut(s)	726
GluI	GCNGC	5 cut(s)	191, 194, 279, 564, 678
GsaI	CCCAGC	1 cut(s)	707
GsuI	CTGGAG	1 cut(s)	250
HapII	CCGG	1 cut(s)	432
Hin1II	CATG	4 cut(s)	70, 356, 467, 656
HincII	GTYRAC	2 cut(s)	6, 583
HindII	GTYRAC	2 cut(s)	6, 583
HinfI	GANTC	3 cut(s)	441, 660, 687
HpaII	CCGG	1 cut(s)	432
Hpy166II	GTNNAC	3 cut(s)	6, 416, 583
Hpy188I	TCNGA	3 cut(s)	92, 105, 818
Hpy188III	TCNNGA	5 cut(s)	67, 142, 438, 684, 697
Hpy8I	GTNNAC	3 cut(s)	6, 416, 583
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4V	TGCA	7 cut(s)	278, 377, 463, 503, 533, 566, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 530
HpyF3I	CTNAG	2 cut(s)	16, 217
Hsp92II	CATG	4 cut(s)	70, 356, 467, 656
KpnI	GGTACC	1 cut(s)	513
Kzo9I	GATC	8 cut(s)	100, 120, 138, 144, 347, 358, 434, 626
Lsp1109I	GCAGC	5 cut(s)	180, 202, 290, 550, 664
LweI	GCATC	4 cut(s)	35, 689, 750, 772
MaeI	CTAG	1 cut(s)	726
MaeIII	GTNAC	1 cut(s)	715
MalI	GATC	8 cut(s)	102, 122, 140, 146, 349, 360, 436, 628
MboI	GATC	8 cut(s)	100, 120, 138, 144, 347, 358, 434, 626
MfeI	CAATTG	1 cut(s)	74
MflI	RGATCY	2 cut(s)	120, 626
MluCI	AATT	6 cut(s)	35, 74, 158, 260, 330, 638
MlyI	GAGTC	2 cut(s)	435, 654
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	5 cut(s)	99, 315, 596, 613, 650
MroXI	GAANNNNTTC	1 cut(s)	62
MseI	TTAA	2 cut(s)	171, 731
MspA1I	CMGCKG	1 cut(s)	193
MspCI	CTTAAG	1 cut(s)	170
MspI	CCGG	1 cut(s)	432
MspR9I	CCNGG	2 cut(s)	98, 149
MunI	CAATTG	1 cut(s)	74
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	2 cut(s)	98, 149
MwoI	GCNNNNNNNGC	2 cut(s)	284, 530
NdeI	CATATG	1 cut(s)	363
NdeII	GATC	8 cut(s)	100, 120, 138, 144, 347, 358, 434, 626
NheI	GCTAGC	1 cut(s)	725
NlaIII	CATG	4 cut(s)	70, 356, 467, 656
NlaIV	GGNNCC	3 cut(s)	246, 511, 701
NmuCI	GTSAC	1 cut(s)	715
PagI	TCATGA	1 cut(s)	66
PctI	GAATGC	1 cut(s)	64
PdmI	GAANNNNTTC	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	687
PflMI	CCANNNNNTGG	1 cut(s)	318
PkrI	GCNGC	5 cut(s)	192, 195, 280, 565, 679
PleI	GAGTC	2 cut(s)	435, 654
PpsI	GAGTC	2 cut(s)	435, 654
Psp6I	CCWGG	2 cut(s)	96, 147
PspFI	CCCAGC	1 cut(s)	703
PspGI	CCWGG	2 cut(s)	96, 147
PspN4I	GGNNCC	3 cut(s)	246, 511, 701
PspPI	GGNCC	2 cut(s)	199, 245
PstNI	CAGNNNCTG	1 cut(s)	196
PsuI	RGATCY	2 cut(s)	120, 626
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	4 cut(s)	42, 394, 511, 539
RsaNI	GTAC	4 cut(s)	41, 393, 510, 538
SalI	GTCGAC	1 cut(s)	581
SaqAI	TTAA	2 cut(s)	171, 731
SatI	GCNGC	5 cut(s)	191, 194, 279, 564, 678
Sau3AI	GATC	8 cut(s)	100, 120, 138, 144, 347, 358, 434, 626
Sau96I	GGNCC	2 cut(s)	199, 245
SchI	GAGTC	2 cut(s)	435, 654
ScrFI	CCNGG	2 cut(s)	98, 149
SfaNI	GCATC	4 cut(s)	35, 689, 750, 772
SfcI	CTRYAG	1 cut(s)	514
SinI	GGWCC	2 cut(s)	199, 245
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	6 cut(s)	35, 74, 158, 260, 330, 638
SspMI	CTAG	1 cut(s)	726
StyD4I	CCNGG	2 cut(s)	96, 147
StyI	CCWWGG	1 cut(s)	248
TaaI	ACNGT	1 cut(s)	518
TaqI	TCGA	1 cut(s)	582
TasI	AATT	6 cut(s)	35, 74, 158, 260, 330, 638
TatI	WGTACW	1 cut(s)	40
TfiI	GAWTC	1 cut(s)	687
Tru1I	TTAA	2 cut(s)	171, 731
Tru9I	TTAA	2 cut(s)	171, 731
TseFI	GTSAC	1 cut(s)	715
TseI	GCWGC	5 cut(s)	190, 193, 278, 563, 677
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	3 cut(s)	55, 410, 441
Van91I	CCANNNNNTGG	1 cut(s)	318
Vha464I	CTTAAG	1 cut(s)	170
VpaK11BI	GGWCC	2 cut(s)	199, 245
XapI	RAATTY	2 cut(s)	330, 638
XcmI	CCANNNNNNNNNTGG	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	582
XmnI	GAANNNNTTC	1 cut(s)	62
XspI	CTAG	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.