MD15G1219600.v1.1

Belongs to the eIF-2B alpha beta delta subunits family. MtnA subfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
17755973 .. 17758762
2790 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1219600.v1.1.491

Sequence Viewer

Length: 1149 bp
ATGGCCCCTCATTCGGAGTTCACTGACGGAACCCAAGCGCCCAACTCCCTCCAGGCCATCTGCTACAAGCGCGGCTCCCTTCAGCTACTCGATCAGACGAAGCTCCCATTACAAAGTACATATTTGGATATCCGGGACTCCACGGATGGATGGCACGCAATCAAAGACATGGTGGTGCGCGGCGCACCCGCCATTGCCATTGCCGCGGCTCTCTCTTTGGCCGTGGAAATTTTTAACTTGGAGGATTTCAATGGAACGCCTGACGAAGCGTTTTCTTTCATTGTCATGAAATTGGAGTACCTTGTCTCCAGCCGACCAACTGCTGTCAATCTTTCGGATGCTGCAGCTAAACTAAAGCAAATTGCATCCGCGGTTGCCACTACTACTTCGGACGCAAGGAATGTGTTTGAGGCTTACATAGAAGCTTCTGAAATCATGCTCAAGGACGATGTCGCCTCAAACAAGGCTATTGGATCTCATGGAGCAAGTTTTATTCAGAACCTACTGGGAAACTCTAAGAACATTTCTATGTTGACCCATTGCAACACTGGCAGTCTTGCAACAGCTGGTTATGGTACTGCTCTCGGTGTCATCCGTTCACTTCATACTGAAGGAGTGTTAGAAAGGGCCTATTGTACAGAGACACGCCCATTCAACCAAGGATCCAGACTCACAGCATTTGAGTTGGTGCATGATAACATACCTGCTACTCTTATAGCAGACTCGGCTGCAGCTGCATTAATGAAATTTGCACGTGTGAATGCTGTAGTTGTTGGAGCATATCGCGTGGCTGCAAATGGTGACACTGCGAACAAGATTGGGACCTACAATCTTGCCGTGAGTGCAAAGCACCATAACATTCCATTTTTTGTGGCTGCACCACTCACTTCCGTCGACTTATCTCTTTCTTCTGGAGAAGAGATAATAATAGAGGAAAGATCTCCAAAGGAATTGTTGAACACACACGGAGGACTCGGGGAACAAGTTGCTGCATTCGGAATCTCTGTCTGGAACCCGGCTTTCGATGTTACCCCTGCCAATTTAATAACCGGTATCATAACCGAGAAGGGCGTTATTACAAAAAAGGGCACTGACGCTTTCGACATAAAGGGTTTTGTTCAGAAGGAAGCCGTGCAGGCCAGTGCATAA

Protein Analysis

383

Amino Acids

40.53

Weight (kDa)

5.5

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IF-2B PF01008 59 - 360 1e-75 Initiation factor 2 subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 712
AccI GTMKAC 1 cut(s) 894
AccII CGCG 5 cut(s) 72, 180, 206, 371, 786
AciI CCGC 7 cut(s) 72, 180, 189, 204, 206, 369, 371
AclWI GGATC 3 cut(s) 481, 657, 670
AcoI YGGCCR 1 cut(s) 219
AcsI RAATTY 2 cut(s) 228, 746
AcuI CTGAAG 2 cut(s) 65, 630
AcvI CACGTG 1 cut(s) 755
AfaI GTAC 4 cut(s) 118, 299, 577, 637
AfiI CCNNNNNNNGG 1 cut(s) 13
AflIII ACRYGT 1 cut(s) 754
AgeI ACCGGT 1 cut(s) 1049
AgsI TTSAA 3 cut(s) 250, 655, 958
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 6 cut(s) 85, 103, 347, 425, 566, 734
AluI AGCT 6 cut(s) 85, 103, 347, 425, 566, 734
Alw26I GTCTC 2 cut(s) 310, 635
AlwI GGATC 3 cut(s) 481, 657, 670
Ama87I CYCGRG 1 cut(s) 974
AoxI GGCC 5 cut(s) 3, 54, 219, 627, 1137
ApeKI GCWGC 8 cut(s) 341, 344, 728, 731, 734, 791, 875, 989
ApoI RAATTY 2 cut(s) 228, 746
AseI ATTAAT 1 cut(s) 740
AsiGI ACCGGT 1 cut(s) 1049
AspLEI GCGC 4 cut(s) 40, 72, 180, 185
AspS9I GGNCC 3 cut(s) 4, 627, 822
AsuC2I CCSGG 2 cut(s) 134, 1016
AsuHPI GGTGA 1 cut(s) 812
AvaI CYCGRG 1 cut(s) 974
AvaII GGWCC 1 cut(s) 822
BaeGI GKGCMC 1 cut(s) 1091
BamHI GGATCC 1 cut(s) 662
BbrPI CACGTG 1 cut(s) 755
BbvI GCAGC 8 cut(s) 328, 356, 715, 721, 743, 778, 862, 976
BccI CCATC 3 cut(s) 65, 140, 144
BceAI ACGGC 3 cut(s) 206, 821, 1115
BciT130I CCWGG 1 cut(s) 53
BcnI CCSGG 2 cut(s) 134, 1016
BcoDI GTCTC 2 cut(s) 310, 635
BfmI CTRYAG 3 cut(s) 342, 729, 765
BfoI RGCGCY 1 cut(s) 41
BfuAI ACCTGC 1 cut(s) 712
BglI GCCNNNNNGGC 1 cut(s) 1136
BglII AGATCT 1 cut(s) 938
Bme1390I CCNGG 3 cut(s) 53, 134, 1016
Bme18I GGWCC 1 cut(s) 822
BmeT110I CYCGRG 1 cut(s) 974
BmgT120I GGNCC 3 cut(s) 4, 627, 822
BmiI GGNNCC 6 cut(s) 6, 31, 76, 664, 823, 1013
BmrFI CCNGG 3 cut(s) 53, 134, 1016
BmrI ACTGGG 1 cut(s) 515
BmsI GCATC 2 cut(s) 328, 374
BmuI ACTGGG 1 cut(s) 515
BpmI CTGGAG 3 cut(s) 35, 292, 933
BpuEI CTTGAG 1 cut(s) 425
BpuMI CCSGG 2 cut(s) 134, 1016
BsaAI YACGTR 1 cut(s) 755
BsaJI CCNNGG 5 cut(s) 141, 204, 222, 369, 658
BsaWI WCCGGW 1 cut(s) 1049
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
Bsc4I CCNNNNNNNGG 1 cut(s) 13
Bse118I RCCGGY 1 cut(s) 1049
Bse1I ACTGG 3 cut(s) 510, 553, 1140
Bse3DI GCAATG 3 cut(s) 192, 198, 538
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 5 cut(s) 141, 204, 222, 369, 658
BseGI GGATG 5 cut(s) 151, 155, 343, 365, 591
BseLI CCNNNNNNNGG 1 cut(s) 13
BseMI GCAATG 3 cut(s) 192, 198, 538
BseNI ACTGG 3 cut(s) 510, 553, 1140
BseSI GKGCMC 1 cut(s) 1091
BseXI GCAGC 8 cut(s) 328, 356, 715, 721, 743, 778, 862, 976
BsgI GTGCAG 1 cut(s) 861
Bsh1236I CGCG 5 cut(s) 72, 180, 206, 371, 786
BshFI GGCC 5 cut(s) 5, 56, 221, 629, 1139
BshTI ACCGGT 1 cut(s) 1049
BsiHKCI CYCGRG 1 cut(s) 974
BsiSI CCGG 3 cut(s) 133, 1016, 1050
BslFI GGGAC 2 cut(s) 149, 835
BslI CCNNNNNNNGG 1 cut(s) 13
BsmAI GTCTC 2 cut(s) 310, 635
BsmFI GGGAC 2 cut(s) 149, 835
BsmI GAATGC 2 cut(s) 766, 992
BsnI GGCC 5 cut(s) 5, 56, 221, 629, 1139
BsoBI CYCGRG 1 cut(s) 974
Bsp1286I GDGCHC 1 cut(s) 1091
Bsp1407I TGTACA 1 cut(s) 635
Bsp143I GATC 4 cut(s) 91, 473, 662, 938
BspACI CCGC 7 cut(s) 72, 180, 189, 204, 206, 369, 371
BspANI GGCC 5 cut(s) 5, 56, 221, 629, 1139
BspFNI CGCG 5 cut(s) 72, 180, 206, 371, 786
BspHI TCATGA 1 cut(s) 285
BspLI GGNNCC 6 cut(s) 6, 31, 76, 664, 823, 1013
BspMAI CTGCAG 2 cut(s) 346, 733
BspMI ACCTGC 1 cut(s) 712
BspPI GGATC 3 cut(s) 481, 657, 670
BsrDI GCAATG 3 cut(s) 192, 198, 538
BsrFI RCCGGY 1 cut(s) 1049
BsrGI TGTACA 1 cut(s) 635
BsrI ACTGG 3 cut(s) 510, 553, 1140
BssAI RCCGGY 1 cut(s) 1049
BssECI CCNNGG 5 cut(s) 141, 204, 222, 369, 658
BssMI GATC 4 cut(s) 91, 473, 662, 938
BssT1I CCWWGG 1 cut(s) 658
Bst2UI CCWGG 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 912
BstAUI TGTACA 1 cut(s) 635
BstBAI YACGTR 1 cut(s) 755
BstC8I GCNNGC 2 cut(s) 156, 1137
BstDEI CTNAG 1 cut(s) 516
BstDSI CCRYGG 4 cut(s) 141, 204, 222, 369
BstF5I GGATG 5 cut(s) 151, 155, 343, 365, 591
BstFNI CGCG 5 cut(s) 72, 180, 206, 371, 786
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 4 cut(s) 40, 72, 180, 185
BstKTI GATC 4 cut(s) 94, 476, 665, 941
BstMAI GTCTC 2 cut(s) 310, 635
BstMBI GATC 4 cut(s) 91, 473, 662, 938
BstMWI GCNNNNNNNGC 7 cut(s) 69, 203, 549, 725, 734, 842, 1136
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 3 cut(s) 51, 132, 1014
BstSFI CTRYAG 3 cut(s) 342, 729, 765
BstSLI GKGCMC 1 cut(s) 1091
BstUI CGCG 5 cut(s) 72, 180, 206, 371, 786
BstV1I GCAGC 8 cut(s) 328, 356, 715, 721, 743, 778, 862, 976
BstX2I RGATCY 3 cut(s) 473, 662, 938
BstYI RGATCY 3 cut(s) 473, 662, 938
BsuRI GGCC 5 cut(s) 5, 56, 221, 629, 1139
BtgI CCRYGG 4 cut(s) 141, 204, 222, 369
BtsCI GGATG 5 cut(s) 151, 155, 343, 365, 591
BtsI GCAGTG 1 cut(s) 804
BtsIMutI CAGTG 5 cut(s) 21, 546, 804, 1089, 1147
BveI ACCTGC 1 cut(s) 712
Cac8I GCNNGC 2 cut(s) 156, 1137
CciI TCATGA 1 cut(s) 285
CfoI GCGC 4 cut(s) 40, 72, 180, 185
Cfr10I RCCGGY 1 cut(s) 1049
Cfr13I GGNCC 3 cut(s) 4, 627, 822
Cfr42I CCGCGG 2 cut(s) 207, 372
CseI GACGC 2 cut(s) 401, 1103
Csp6I GTAC 4 cut(s) 117, 298, 576, 636
CspAI ACCGGT 1 cut(s) 1049
CviAII CATG 5 cut(s) 169, 286, 436, 479, 692
CviQI GTAC 4 cut(s) 117, 298, 576, 636
DdeI CTNAG 1 cut(s) 516
DpnI GATC 4 cut(s) 93, 475, 664, 940
DpnII GATC 4 cut(s) 91, 473, 662, 938
EaeI YGGCCR 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 912
EarI CTCTTC 1 cut(s) 912
Eco130I CCWWGG 1 cut(s) 658
Eco32I GATATC 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 822
Eco57I CTGAAG 2 cut(s) 65, 630
Eco72I CACGTG 1 cut(s) 755
Eco88I CYCGRG 1 cut(s) 974
EcoO109I RGGNCCY 2 cut(s) 627, 822
EcoRII CCWGG 1 cut(s) 51
EcoRV GATATC 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 658
ErhI CCWWGG 1 cut(s) 658
FaeI CATG 5 cut(s) 172, 289, 439, 482, 695
FaqI GGGAC 2 cut(s) 149, 835
FatI CATG 5 cut(s) 168, 285, 435, 478, 691
FauI CCCGC 1 cut(s) 196
FblI GTMKAC 1 cut(s) 894
FokI GGATG 5 cut(s) 158, 162, 350, 352, 578
GlaI GCGC 4 cut(s) 39, 71, 179, 184
GsuI CTGGAG 3 cut(s) 35, 292, 933
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 5 cut(s) 5, 56, 221, 629, 1139
HapII CCGG 3 cut(s) 133, 1016, 1050
HgaI GACGC 2 cut(s) 401, 1103
HhaI GCGC 4 cut(s) 40, 72, 180, 185
Hin1II CATG 5 cut(s) 172, 289, 439, 482, 695
Hin6I GCGC 4 cut(s) 38, 70, 178, 183
HinP1I GCGC 4 cut(s) 38, 70, 178, 183
HincII GTYRAC 2 cut(s) 534, 895
HindII GTYRAC 2 cut(s) 534, 895
HindIII AAGCTT 1 cut(s) 423
HinfI GANTC 5 cut(s) 137, 669, 722, 972, 999
HpaII CCGG 3 cut(s) 133, 1016, 1050
HphI GGTGA 1 cut(s) 812
Hpy166II GTNNAC 4 cut(s) 21, 534, 599, 895
Hpy188I TCNGA 8 cut(s) 16, 96, 337, 391, 430, 498, 998, 1122
Hpy188III TCNNGA 4 cut(s) 286, 666, 912, 1009
Hpy8I GTNNAC 4 cut(s) 21, 534, 599, 895
Hpy99I CGWCG 1 cut(s) 896
HpyAV CCTTC 4 cut(s) 89, 605, 1060, 1117
HpyCH4IV ACGT 1 cut(s) 754
HpyF10VI GCNNNNNNNGC 7 cut(s) 69, 203, 549, 725, 734, 842, 1136
HpyF3I CTNAG 1 cut(s) 516
HpySE526I ACGT 1 cut(s) 754
Hsp92II CATG 5 cut(s) 172, 289, 439, 482, 695
HspAI GCGC 4 cut(s) 38, 70, 178, 183
KspI CCGCGG 2 cut(s) 207, 372
Kzo9I GATC 4 cut(s) 91, 473, 662, 938
LmnI GCTCC 4 cut(s) 80, 108, 482, 776
Lsp1109I GCAGC 8 cut(s) 328, 356, 715, 721, 743, 778, 862, 976
LweI GCATC 2 cut(s) 328, 374
MaeII ACGT 1 cut(s) 754
MaeIII GTNAC 2 cut(s) 800, 1027
MalI GATC 4 cut(s) 93, 475, 664, 940
MboI GATC 4 cut(s) 91, 473, 662, 938
MboII GAAGA 2 cut(s) 900, 929
MflI RGATCY 3 cut(s) 473, 662, 938
MhlI GDGCHC 1 cut(s) 1091
MluCI AATT 6 cut(s) 228, 290, 360, 746, 950, 1039
MlyI GAGTC 4 cut(s) 131, 663, 716, 966
MmeI TCCRAC 1 cut(s) 754
MnlI CCTC 7 cut(s) 18, 59, 235, 403, 466, 925, 962
MseI TTAA 3 cut(s) 234, 740, 1043
MslI CAYNNNNRTG 3 cut(s) 173, 284, 527
MspA1I CMGCKG 4 cut(s) 206, 371, 566, 734
MspI CCGG 3 cut(s) 133, 1016, 1050
MspR9I CCNGG 3 cut(s) 53, 134, 1016
MteI GCGCNGCGC 1 cut(s) 181
Mva1269I GAATGC 2 cut(s) 766, 992
MvaI CCWGG 1 cut(s) 53
MvnI CGCG 5 cut(s) 72, 180, 206, 371, 786
MwoI GCNNNNNNNGC 7 cut(s) 69, 203, 549, 725, 734, 842, 1136
NciI CCSGG 2 cut(s) 134, 1016
NdeII GATC 4 cut(s) 91, 473, 662, 938
NlaIII CATG 5 cut(s) 172, 289, 439, 482, 695
NlaIV GGNNCC 6 cut(s) 6, 31, 76, 664, 823, 1013
NmeAIII GCCGAG 1 cut(s) 704
NmuCI GTSAC 1 cut(s) 800
PagI TCATGA 1 cut(s) 285
PctI GAATGC 2 cut(s) 766, 992
PfeI GAWTC 1 cut(s) 999
PflFI GACNNNGTC 1 cut(s) 449
PfoI TCCNGGA 1 cut(s) 132
PinAI ACCGGT 1 cut(s) 1049
PleI GAGTC 4 cut(s) 131, 663, 716, 966
PmaCI CACGTG 1 cut(s) 755
PmlI CACGTG 1 cut(s) 755
PpsI GAGTC 4 cut(s) 131, 663, 716, 966
Ppu21I YACGTR 1 cut(s) 755
PpuMI RGGWCCY 1 cut(s) 822
PshBI ATTAAT 1 cut(s) 740
Psp5II RGGWCCY 1 cut(s) 822
Psp6I CCWGG 1 cut(s) 51
PspCI CACGTG 1 cut(s) 755
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 6 cut(s) 6, 31, 76, 664, 823, 1013
PspPI GGNCC 3 cut(s) 4, 627, 822
PspPPI RGGWCCY 1 cut(s) 822
PstI CTGCAG 2 cut(s) 346, 733
PsuI RGATCY 3 cut(s) 473, 662, 938
PsyI GACNNNGTC 1 cut(s) 449
PvuII CAGCTG 2 cut(s) 566, 734
RsaI GTAC 4 cut(s) 118, 299, 577, 637
RsaNI GTAC 4 cut(s) 117, 298, 576, 636
RseI CAYNNNNRTG 3 cut(s) 173, 284, 527
SacII CCGCGG 2 cut(s) 207, 372
SalI GTCGAC 1 cut(s) 893
SaqAI TTAA 3 cut(s) 234, 740, 1043
Sau3AI GATC 4 cut(s) 91, 473, 662, 938
Sau96I GGNCC 3 cut(s) 4, 627, 822
SchI GAGTC 4 cut(s) 131, 663, 716, 966
ScrFI CCNGG 3 cut(s) 53, 134, 1016
SduI GDGCHC 1 cut(s) 1091
SfaNI GCATC 2 cut(s) 328, 374
SfcI CTRYAG 3 cut(s) 342, 729, 765
Sfr303I CCGCGG 2 cut(s) 207, 372
SgrBI CCGCGG 2 cut(s) 207, 372
SinI GGWCC 1 cut(s) 822
SmiMI CAYNNNNRTG 3 cut(s) 173, 284, 527
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 6 cut(s) 228, 290, 360, 746, 950, 1039
SsiI CCGC 7 cut(s) 72, 180, 189, 204, 206, 369, 371
StyD4I CCNGG 3 cut(s) 51, 132, 1014
StyI CCWWGG 1 cut(s) 658
TaiI ACGT 1 cut(s) 757
TaqI TCGA 4 cut(s) 90, 894, 1023, 1101
TasI AATT 6 cut(s) 228, 290, 360, 746, 950, 1039
TatI WGTACW 2 cut(s) 116, 635
TauI GCSGC 4 cut(s) 75, 183, 206, 209
TfiI GAWTC 1 cut(s) 999
Tru1I TTAA 3 cut(s) 234, 740, 1043
Tru9I TTAA 3 cut(s) 234, 740, 1043
TscAI CASTG 5 cut(s) 28, 553, 811, 1096, 1147
TseFI GTSAC 1 cut(s) 800
TseI GCWGC 8 cut(s) 341, 344, 728, 731, 734, 791, 875, 989
Tsp45I GTSAC 1 cut(s) 800
TspDTI ATGAA 4 cut(s) 268, 302, 593, 758
TspGWI ACGGA 5 cut(s) 42, 158, 584, 880, 981
TspRI CASTG 5 cut(s) 28, 553, 811, 1096, 1147
Tth111I GACNNNGTC 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 822
VspI ATTAAT 1 cut(s) 740
XapI RAATTY 2 cut(s) 228, 746
XcmI CCANNNNNNNNNTGG 1 cut(s) 545
XmiI GTMKAC 1 cut(s) 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.