MD02G1094700.v1.1

Belongs to the eIF-2B alpha beta delta subunits family. MtnA subfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
7503759 .. 7506514
2756 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1094700.v1.1.491

Sequence Viewer

Length: 1149 bp
ATGGCCCCTAATTCGGAGTTCACAGACGGTACCCCAGCGCCCAACTCCCTCCAGGCCATTTGCTACAAGCGTGGCTCCCTTCAGCTACTCGATCAGACGAAGCTCCCATTGCAAAGTACGTATTTGGATATCCGGGACTCCACAGATGGATGGCACGCAATCAAAGATATGGTGGTGCGCGGCGCACCCGCCATTGCTATCGCGGCGGCTCTCTCATTGGCTGTGGAAATTTTTAACTTGGAGGATTTCAATGGAACCCCCGACGAAGCGTTCTCTTTCATTGTCATGAAATTGGAGTACCTTGTCTCCAGCCGACCAACTGCTGTCAATCTTTCGGATGCTGCAGCTAAACTGAAGCAAATTGCATCCGAAGTTGCCACTACTACTTCGGACGCAAGCAAAGTGTTTGAGGCTTACATAGAAGCTTCCGAAATCATGCTCAAGGACGATGTAGCCTCAAACAAGGCTATTGGATCTCATGGAGCAAATTTTATTCAACACCTGCTGGGAAACTCTAAGAACATTTCTATGTTGACCCATTGCAACACTGGCAGTCTAGCAACAGCTGGTTATGGTACTGCTCTTGGTGTCATCCGTTCACTTCATACCGAAGGAGTGTTAGAAAGGGCCTATTGTACAGAGACACGTCCATTCAACCAAGGATCCAGACTCACAGCATTTGAGTTGGTGCATGATAACATACCGGGCACTCTTATAGCAGATTCTGCTGCAGCTGCATTAATGAAATTTGGACGTGTGAATGCTGTAGTTGTTGGAGCAGATCGTGTGGCTACAAATGGTGACACCGCTAACAAGATTGGAACCTACAGTCTTGCCGTAAGTGCAAAGCACCATAACATTCCATTTTTCGTGGCTGCACCACTCACTTCCATCGACTTATCTCTTTCCTCCGGGGAAGAGATAATAATAGAGGAGAGATCCCCAAAGGAATTGTTGAACACACACGGAGGGCTCGGGGAACAAGTTGCTGCATCTGGAATTGCTGTCTGGAACCCAGCTTTCGATGTTACACCTGCCAATTTAATAACCGGTATCATAACCGAGAAGGGTGTTATTACCAAAAAGGGCACTGATGCTTTCAACATCAAGGGTTTTGTTCAGAAGGCAGCCGTGCAGTCCGGTGCATAA

Protein Analysis

383

Amino Acids

40.32

Weight (kDa)

5.5

Isoelectric Point (pI)

35.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IF-2B PF01008 59 - 360 6.9e-78 Initiation factor 2 subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 510, 1042
Acc36I ACCTGC 2 cut(s) 510, 1042
Acc65I GGTACC 1 cut(s) 29
AccB1I GGYRCC 1 cut(s) 29
AccII CGCG 2 cut(s) 180, 203
AciI CCGC 5 cut(s) 180, 189, 203, 206, 807
AclWI GGATC 4 cut(s) 481, 657, 670, 933
AcsI RAATTY 3 cut(s) 228, 487, 746
AcuI CTGAAG 2 cut(s) 65, 374
AfaI GTAC 5 cut(s) 31, 118, 299, 577, 637
AfiI CCNNNNNNNGG 1 cut(s) 13
AflIII ACRYGT 2 cut(s) 644, 754
AgeI ACCGGT 1 cut(s) 1049
AgsI TTSAA 5 cut(s) 250, 497, 655, 958, 1102
AjiI CACGTC 2 cut(s) 647, 755
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 7 cut(s) 85, 103, 347, 425, 566, 734, 1019
AluI AGCT 7 cut(s) 85, 103, 347, 425, 566, 734, 1019
Alw26I GTCTC 2 cut(s) 310, 635
AlwI GGATC 4 cut(s) 481, 657, 670, 933
AlwNI CAGNNNCTG 1 cut(s) 725
Ama87I CYCGRG 1 cut(s) 974
AoxI GGCC 3 cut(s) 3, 54, 627
ApeKI GCWGC 8 cut(s) 341, 344, 728, 731, 734, 875, 989, 1127
ApoI RAATTY 3 cut(s) 228, 487, 746
AseI ATTAAT 1 cut(s) 740
AsiGI ACCGGT 1 cut(s) 1049
Asp718I GGTACC 1 cut(s) 29
AspLEI GCGC 3 cut(s) 40, 180, 185
AspS9I GGNCC 2 cut(s) 4, 627
AsuC2I CCSGG 3 cut(s) 134, 705, 913
AsuHPI GGTGA 1 cut(s) 812
AvaI CYCGRG 1 cut(s) 974
BaeGI GKGCMC 2 cut(s) 710, 1091
BamHI GGATCC 1 cut(s) 662
BanI GGYRCC 1 cut(s) 29
BanII GRGCYC 1 cut(s) 975
BbvI GCAGC 8 cut(s) 328, 356, 715, 721, 743, 862, 976, 1139
BccI CCATC 3 cut(s) 140, 144, 899
BceAI ACGGC 2 cut(s) 821, 1115
BciT130I CCWGG 1 cut(s) 53
BcnI CCSGG 3 cut(s) 134, 705, 913
BcoDI GTCTC 2 cut(s) 310, 635
BfaI CTAG 1 cut(s) 557
BfmI CTRYAG 4 cut(s) 342, 729, 765, 826
BfoI RGCGCY 1 cut(s) 41
BfuAI ACCTGC 2 cut(s) 510, 1042
Bme1390I CCNGG 4 cut(s) 53, 134, 705, 913
BmeT110I CYCGRG 1 cut(s) 974
BmgBI CACGTC 2 cut(s) 647, 755
BmgT120I GGNCC 2 cut(s) 4, 627
BmiI GGNNCC 7 cut(s) 6, 31, 76, 256, 664, 823, 1013
BmrFI CCNGG 4 cut(s) 53, 134, 705, 913
BmsI GCATC 4 cut(s) 328, 374, 1001, 1084
BpmI CTGGAG 2 cut(s) 35, 292
BpuEI CTTGAG 1 cut(s) 425
BpuMI CCSGG 3 cut(s) 134, 705, 913
BsaAI YACGTR 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 658, 912
BsaWI WCCGGW 2 cut(s) 1049, 1139
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
Bsc4I CCNNNNNNNGG 1 cut(s) 13
Bse118I RCCGGY 1 cut(s) 1049
Bse1I ACTGG 1 cut(s) 553
Bse3DI GCAATG 3 cut(s) 107, 192, 538
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 2 cut(s) 658, 912
BseGI GGATG 4 cut(s) 155, 343, 365, 591
BseLI CCNNNNNNNGG 1 cut(s) 13
BseMI GCAATG 3 cut(s) 107, 192, 538
BseNI ACTGG 1 cut(s) 553
BseRI GAGGAG 1 cut(s) 947
BseSI GKGCMC 2 cut(s) 710, 1091
BseXI GCAGC 8 cut(s) 328, 356, 715, 721, 743, 862, 976, 1139
BseYI CCCAGC 3 cut(s) 34, 505, 1015
BsgI GTGCAG 1 cut(s) 861
Bsh1236I CGCG 2 cut(s) 180, 203
BshFI GGCC 3 cut(s) 5, 56, 629
BshNI GGYRCC 1 cut(s) 29
BshTI ACCGGT 1 cut(s) 1049
BsiHKCI CYCGRG 1 cut(s) 974
BsiSI CCGG 5 cut(s) 133, 704, 912, 1050, 1140
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 13
BsmAI GTCTC 2 cut(s) 310, 635
BsmFI GGGAC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 766
BsnI GGCC 3 cut(s) 5, 56, 629
BsoBI CYCGRG 1 cut(s) 974
Bsp1286I GDGCHC 3 cut(s) 710, 975, 1091
Bsp1407I TGTACA 1 cut(s) 635
Bsp143I GATC 5 cut(s) 91, 473, 662, 781, 938
BspACI CCGC 5 cut(s) 180, 189, 203, 206, 807
BspANI GGCC 3 cut(s) 5, 56, 629
BspFNI CGCG 2 cut(s) 180, 203
BspHI TCATGA 1 cut(s) 285
BspLI GGNNCC 7 cut(s) 6, 31, 76, 256, 664, 823, 1013
BspMAI CTGCAG 2 cut(s) 346, 733
BspMI ACCTGC 2 cut(s) 510, 1042
BspPI GGATC 4 cut(s) 481, 657, 670, 933
BspT107I GGYRCC 1 cut(s) 29
BsrDI GCAATG 3 cut(s) 107, 192, 538
BsrFI RCCGGY 1 cut(s) 1049
BsrGI TGTACA 1 cut(s) 635
BsrI ACTGG 1 cut(s) 553
BssAI RCCGGY 1 cut(s) 1049
BssECI CCNNGG 2 cut(s) 658, 912
BssMI GATC 5 cut(s) 91, 473, 662, 781, 938
BssT1I CCWWGG 1 cut(s) 658
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 2 cut(s) 29, 830
Bst6I CTCTTC 1 cut(s) 912
BstAPI GCANNNNNTGC 1 cut(s) 725
BstAUI TGTACA 1 cut(s) 635
BstBAI YACGTR 1 cut(s) 120
BstC8I GCNNGC 2 cut(s) 156, 397
BstDEI CTNAG 1 cut(s) 516
BstF5I GGATG 4 cut(s) 155, 343, 365, 591
BstFNI CGCG 2 cut(s) 180, 203
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 3 cut(s) 40, 180, 185
BstKTI GATC 5 cut(s) 94, 476, 665, 784, 941
BstMAI GTCTC 2 cut(s) 310, 635
BstMBI GATC 5 cut(s) 91, 473, 662, 781, 938
BstMWI GCNNNNNNNGC 6 cut(s) 109, 203, 549, 725, 734, 842
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 4 cut(s) 51, 132, 703, 911
BstSFI CTRYAG 4 cut(s) 342, 729, 765, 826
BstSLI GKGCMC 2 cut(s) 710, 1091
BstSNI TACGTA 1 cut(s) 120
BstUI CGCG 2 cut(s) 180, 203
BstV1I GCAGC 8 cut(s) 328, 356, 715, 721, 743, 862, 976, 1139
BstX2I RGATCY 3 cut(s) 473, 662, 938
BstYI RGATCY 3 cut(s) 473, 662, 938
BsuRI GGCC 3 cut(s) 5, 56, 629
BtrI CACGTC 2 cut(s) 647, 755
BtsCI GGATG 4 cut(s) 155, 343, 365, 591
BtsIMutI CAGTG 2 cut(s) 546, 1089
BveI ACCTGC 2 cut(s) 510, 1042
Cac8I GCNNGC 2 cut(s) 156, 397
CaiI CAGNNNCTG 1 cut(s) 725
CciI TCATGA 1 cut(s) 285
CfoI GCGC 3 cut(s) 40, 180, 185
Cfr10I RCCGGY 1 cut(s) 1049
Cfr13I GGNCC 2 cut(s) 4, 627
CseI GACGC 1 cut(s) 401
Csp6I GTAC 5 cut(s) 30, 117, 298, 576, 636
CspAI ACCGGT 1 cut(s) 1049
CviAII CATG 4 cut(s) 286, 436, 479, 692
CviQI GTAC 5 cut(s) 30, 117, 298, 576, 636
DdeI CTNAG 1 cut(s) 516
DpnI GATC 5 cut(s) 93, 475, 664, 783, 940
DpnII GATC 5 cut(s) 91, 473, 662, 781, 938
Eam1104I CTCTTC 1 cut(s) 912
EarI CTCTTC 1 cut(s) 912
Eco105I TACGTA 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 658
Eco24I GRGCYC 1 cut(s) 975
Eco32I GATATC 1 cut(s) 130
Eco57I CTGAAG 2 cut(s) 65, 374
Eco88I CYCGRG 1 cut(s) 974
EcoO109I RGGNCCY 1 cut(s) 627
EcoRII CCWGG 1 cut(s) 51
EcoRV GATATC 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 658
EcoT38I GRGCYC 1 cut(s) 975
ErhI CCWWGG 1 cut(s) 658
FaeI CATG 4 cut(s) 289, 439, 482, 695
FaqI GGGAC 1 cut(s) 149
FatI CATG 4 cut(s) 285, 435, 478, 691
FauI CCCGC 1 cut(s) 196
FokI GGATG 4 cut(s) 162, 350, 352, 578
FriOI GRGCYC 1 cut(s) 975
FspBI CTAG 1 cut(s) 557
GlaI GCGC 3 cut(s) 39, 179, 184
GsaI CCCAGC 3 cut(s) 38, 509, 1019
GsuI CTGGAG 2 cut(s) 35, 292
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 3 cut(s) 5, 56, 629
HapII CCGG 5 cut(s) 133, 704, 912, 1050, 1140
HgaI GACGC 1 cut(s) 401
HhaI GCGC 3 cut(s) 40, 180, 185
Hin1II CATG 4 cut(s) 289, 439, 482, 695
Hin6I GCGC 3 cut(s) 38, 178, 183
HinP1I GCGC 3 cut(s) 38, 178, 183
HincII GTYRAC 1 cut(s) 534
HindII GTYRAC 1 cut(s) 534
HindIII AAGCTT 1 cut(s) 423
HinfI GANTC 3 cut(s) 137, 669, 722
HpaII CCGG 5 cut(s) 133, 704, 912, 1050, 1140
HphI GGTGA 1 cut(s) 812
Hpy166II GTNNAC 3 cut(s) 21, 534, 599
Hpy188I TCNGA 7 cut(s) 16, 96, 337, 370, 391, 430, 1122
Hpy188III TCNNGA 4 cut(s) 286, 666, 996, 1009
Hpy8I GTNNAC 3 cut(s) 21, 534, 599
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 4 cut(s) 89, 605, 1060, 1117
HpyCH4III ACNGT 2 cut(s) 29, 830
HpyCH4IV ACGT 3 cut(s) 119, 646, 754
HpyF10VI GCNNNNNNNGC 6 cut(s) 109, 203, 549, 725, 734, 842
HpyF3I CTNAG 1 cut(s) 516
HpySE526I ACGT 3 cut(s) 119, 646, 754
Hsp92II CATG 4 cut(s) 289, 439, 482, 695
HspAI GCGC 3 cut(s) 38, 178, 183
KpnI GGTACC 1 cut(s) 33
Kzo9I GATC 5 cut(s) 91, 473, 662, 781, 938
LmnI GCTCC 4 cut(s) 80, 108, 482, 776
Lsp1109I GCAGC 8 cut(s) 328, 356, 715, 721, 743, 862, 976, 1139
LweI GCATC 4 cut(s) 328, 374, 1001, 1084
MaeI CTAG 1 cut(s) 557
MaeII ACGT 3 cut(s) 119, 646, 754
MaeIII GTNAC 2 cut(s) 800, 1027
MalI GATC 5 cut(s) 93, 475, 664, 783, 940
MboI GATC 5 cut(s) 91, 473, 662, 781, 938
MboII GAAGA 1 cut(s) 929
MflI RGATCY 3 cut(s) 473, 662, 938
MhlI GDGCHC 3 cut(s) 710, 975, 1091
MluCI AATT 9 cut(s) 10, 228, 290, 360, 487, 746, 950, 999, 1039
MlyI GAGTC 2 cut(s) 131, 663
MmeI TCCRAC 1 cut(s) 754
MnlI CCTC 7 cut(s) 59, 235, 403, 466, 919, 925, 962
MseI TTAA 3 cut(s) 234, 740, 1043
MslI CAYNNNNRTG 2 cut(s) 284, 527
MspA1I CMGCKG 2 cut(s) 566, 734
MspI CCGG 5 cut(s) 133, 704, 912, 1050, 1140
MspR9I CCNGG 4 cut(s) 53, 134, 705, 913
MteI GCGCNGCGC 1 cut(s) 181
Mva1269I GAATGC 1 cut(s) 766
MvaI CCWGG 1 cut(s) 53
MvnI CGCG 2 cut(s) 180, 203
MwoI GCNNNNNNNGC 6 cut(s) 109, 203, 549, 725, 734, 842
NciI CCSGG 3 cut(s) 134, 705, 913
NdeII GATC 5 cut(s) 91, 473, 662, 781, 938
NlaIII CATG 4 cut(s) 289, 439, 482, 695
NlaIV GGNNCC 7 cut(s) 6, 31, 76, 256, 664, 823, 1013
NmuCI GTSAC 1 cut(s) 800
PagI TCATGA 1 cut(s) 285
PaqCI CACCTGC 2 cut(s) 510, 1042
PctI GAATGC 1 cut(s) 766
PfeI GAWTC 1 cut(s) 722
PfoI TCCNGGA 1 cut(s) 132
PinAI ACCGGT 1 cut(s) 1049
PleI GAGTC 2 cut(s) 131, 663
PpsI GAGTC 2 cut(s) 131, 663
Ppu21I YACGTR 1 cut(s) 120
PshBI ATTAAT 1 cut(s) 740
Psp6I CCWGG 1 cut(s) 51
PspFI CCCAGC 3 cut(s) 34, 505, 1015
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 7 cut(s) 6, 31, 76, 256, 664, 823, 1013
PspPI GGNCC 2 cut(s) 4, 627
PstI CTGCAG 2 cut(s) 346, 733
PstNI CAGNNNCTG 1 cut(s) 725
PsuI RGATCY 3 cut(s) 473, 662, 938
PvuII CAGCTG 2 cut(s) 566, 734
RsaI GTAC 5 cut(s) 31, 118, 299, 577, 637
RsaNI GTAC 5 cut(s) 30, 117, 298, 576, 636
RseI CAYNNNNRTG 2 cut(s) 284, 527
SaqAI TTAA 3 cut(s) 234, 740, 1043
Sau3AI GATC 5 cut(s) 91, 473, 662, 781, 938
Sau96I GGNCC 2 cut(s) 4, 627
SchI GAGTC 2 cut(s) 131, 663
ScrFI CCNGG 4 cut(s) 53, 134, 705, 913
SduI GDGCHC 3 cut(s) 710, 975, 1091
SfaNI GCATC 4 cut(s) 328, 374, 1001, 1084
SfcI CTRYAG 4 cut(s) 342, 729, 765, 826
SmiMI CAYNNNNRTG 2 cut(s) 284, 527
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
SnaBI TACGTA 1 cut(s) 120
Sse9I AATT 9 cut(s) 10, 228, 290, 360, 487, 746, 950, 999, 1039
SsiI CCGC 5 cut(s) 180, 189, 203, 206, 807
SspMI CTAG 1 cut(s) 557
StyD4I CCNGG 4 cut(s) 51, 132, 703, 911
StyI CCWWGG 1 cut(s) 658
TaaI ACNGT 2 cut(s) 29, 830
TaiI ACGT 3 cut(s) 122, 649, 757
TaqI TCGA 3 cut(s) 90, 894, 1023
TasI AATT 9 cut(s) 10, 228, 290, 360, 487, 746, 950, 999, 1039
TatI WGTACW 1 cut(s) 635
TauI GCSGC 3 cut(s) 183, 206, 209
TfiI GAWTC 1 cut(s) 722
Tru1I TTAA 3 cut(s) 234, 740, 1043
Tru9I TTAA 3 cut(s) 234, 740, 1043
TscAI CASTG 2 cut(s) 553, 1096
TseFI GTSAC 1 cut(s) 800
TseI GCWGC 8 cut(s) 341, 344, 728, 731, 734, 875, 989, 1127
Tsp45I GTSAC 1 cut(s) 800
TspDTI ATGAA 4 cut(s) 268, 302, 593, 758
TspGWI ACGGA 2 cut(s) 584, 981
TspRI CASTG 2 cut(s) 553, 1096
VspI ATTAAT 1 cut(s) 740
XapI RAATTY 3 cut(s) 228, 487, 746
XcmI CCANNNNNNNNNTGG 1 cut(s) 545
XspI CTAG 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.