Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007347

Physical Location & Seq

Genomic Coordinates Reverse (-)

5238045 .. 5239297

Gene Structure 1253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g07490.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTTGACCCATTGCAACACTGGCAGTCTTGCAACAGCTGGTTATGGTACTGCTCTTGGTGTCATCCGTTCACTTCATACCGAAGGAGTGTTAGAAAGGGCCTATTGTACAGAGTCGCGTCCATTCAATCAAGGATCCAGACTCACAGCATTTGAGTTGGTGCATGATAACATACCAGGCACTCTTATAGCAGATTCTGCTGCAGCTGCATTAATGAAATTTGGACGTGTGAATGCTGTAGTTGTTGGAGCAGATCGTGTGGCTGCAAATGGTGACACCGCTAACAAGATTGGAACCTACAGTGTTGCCGTAAGTGCAAAGCACCATAACATTCCATTTTTCGTGGCTGCACCACTCACTTCCATCGACTTATCTCTTTCCTCCGGGGAAGAGATAATAATAGAGGAGAGATCCCCAAAGGAATTGTTGAACACACACGGAGGGCTCGGGGAACAAGTTGCTGCATCTGGAATTGCTGTCTGGAACCCAGCTTTCGATGTTACCCCTGCCAATTTAATAACCGGTATCATAACTGAGAAGGGTGTTATTACCAAAAAAGGCACTGATGCTTTCGACATCAAGGGTTTTGTTCAGAAGGCAGCCGTGCAGTCCGGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000302 GO:0003674 GO:0003824 GO:0005575 GO:0005911 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009506 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017144 GO:0019509 GO:0019752 GO:0030054 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0046523 GO:0050896 GO:0051716 GO:0055044 GO:0070887 GO:0071241 GO:0071248 GO:0071265 GO:0071267 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0097366 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

IF-2B

Protein Analysis

207

Amino Acids

21.4

Weight (kDa)

6.05

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05830 AT2G05830 AT2G05830 AT2G05830
fragaria_vesca	FvH4_1g08940
malus_domestica	MD02G1094700.v1.1 MD15G1219600.v1.1
prunus_persica	Prupe.7G196300_v2.0.a1 Prupe.7G196300_v2.0.a1
pyrus_communis	pycom02g07490 pycom15g19470
rosa_chinensis	RchiOBHm_Chr2g0095391
rosa_laevigata	RLG00000016561
rosa_multiflora	Rmu_ssc0000183.1_g000040 Rmu_ssc0000183.1_g000041 Rmu_ssc0000183.1_g000042
rosa_roxburghii	Rroxscaffold_2G00146410
rosa_rugosa	Rorug02G0050400
rosa_samantha	Rh2AG098600 Rh2BG099800 Rh2CG101800 Rh2CG105700 Rh2DG099400
rosa_wichuraiana	Rw2G007440 Rw2G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	118
AciI	CCGC	1 cut(s)	279
AclWI	GGATC	3 cut(s)	129, 142, 405
AcsI	RAATTY	1 cut(s)	218
AfaI	GTAC	2 cut(s)	49, 109
AflIII	ACRYGT	1 cut(s)	226
AgeI	ACCGGT	1 cut(s)	521
AgsI	TTSAA	2 cut(s)	127, 430
AjiI	CACGTC	1 cut(s)	227
AjnI	CCWGG	1 cut(s)	175
AluBI	AGCT	3 cut(s)	38, 206, 491
AluI	AGCT	3 cut(s)	38, 206, 491
AlwI	GGATC	3 cut(s)	129, 142, 405
AlwNI	CAGNNNCTG	1 cut(s)	197
Ama87I	CYCGRG	1 cut(s)	446
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	7 cut(s)	200, 203, 206, 263, 347, 461, 599
ApoI	RAATTY	1 cut(s)	218
AseI	ATTAAT	1 cut(s)	212
AsiGI	ACCGGT	1 cut(s)	521
AspS9I	GGNCC	1 cut(s)	99
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	1 cut(s)	284
AvaI	CYCGRG	1 cut(s)	446
BamHI	GGATCC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	447
BbvI	GCAGC	7 cut(s)	187, 193, 215, 250, 334, 448, 611
BccI	CCATC	1 cut(s)	371
BceAI	ACGGC	2 cut(s)	293, 587
BciT130I	CCWGG	1 cut(s)	177
BcnI	CCSGG	1 cut(s)	385
BfmI	CTRYAG	3 cut(s)	201, 237, 298
BisI	GCNGC	7 cut(s)	201, 204, 207, 264, 348, 462, 600
BlsI	GCNGC	7 cut(s)	202, 205, 208, 265, 349, 463, 601
Bme1390I	CCNGG	2 cut(s)	177, 385
BmeT110I	CYCGRG	1 cut(s)	446
BmgBI	CACGTC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	99
BmiI	GGNNCC	3 cut(s)	136, 295, 485
BmrFI	CCNGG	2 cut(s)	177, 385
BmsI	GCATC	2 cut(s)	473, 556
BpuMI	CCSGG	1 cut(s)	385
BsaJI	CCNNGG	1 cut(s)	384
BsaWI	WCCGGW	2 cut(s)	521, 611
Bse118I	RCCGGY	1 cut(s)	521
Bse1I	ACTGG	1 cut(s)	25
Bse3DI	GCAATG	1 cut(s)	10
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	384
BseGI	GGATG	1 cut(s)	63
BseMI	GCAATG	1 cut(s)	10
BseMII	CTCAG	1 cut(s)	525
BseNI	ACTGG	1 cut(s)	25
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	7 cut(s)	187, 193, 215, 250, 334, 448, 611
BseYI	CCCAGC	1 cut(s)	487
BsgI	GTGCAG	1 cut(s)	333
Bsh1236I	CGCG	1 cut(s)	118
BshFI	GGCC	1 cut(s)	101
BshTI	ACCGGT	1 cut(s)	521
BsiHKCI	CYCGRG	1 cut(s)	446
BsiSI	CCGG	3 cut(s)	384, 522, 612
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	101
BsoBI	CYCGRG	1 cut(s)	446
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp1407I	TGTACA	1 cut(s)	107
Bsp143I	GATC	3 cut(s)	134, 253, 410
BspACI	CCGC	1 cut(s)	279
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	1 cut(s)	526
BspFNI	CGCG	1 cut(s)	118
BspLI	GGNNCC	3 cut(s)	136, 295, 485
BspMAI	CTGCAG	1 cut(s)	205
BspPI	GGATC	3 cut(s)	129, 142, 405
BsrDI	GCAATG	1 cut(s)	10
BsrFI	RCCGGY	1 cut(s)	521
BsrGI	TGTACA	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	25
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	3 cut(s)	134, 253, 410
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	1 cut(s)	302
Bst6I	CTCTTC	1 cut(s)	384
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstAUI	TGTACA	1 cut(s)	107
BstDEI	CTNAG	1 cut(s)	534
BstF5I	GGATG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	118
BstKTI	GATC	3 cut(s)	137, 256, 413
BstMBI	GATC	3 cut(s)	134, 253, 410
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 197, 206, 314
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	2 cut(s)	175, 383
BstSFI	CTRYAG	3 cut(s)	201, 237, 298
BstUI	CGCG	1 cut(s)	118
BstV1I	GCAGC	7 cut(s)	187, 193, 215, 250, 334, 448, 611
BstX2I	RGATCY	2 cut(s)	134, 410
BstYI	RGATCY	2 cut(s)	134, 410
BsuRI	GGCC	1 cut(s)	101
BtrI	CACGTC	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	63
BtsIMutI	CAGTG	3 cut(s)	18, 307, 561
CaiI	CAGNNNCTG	1 cut(s)	197
Cfr10I	RCCGGY	1 cut(s)	521
Cfr13I	GGNCC	1 cut(s)	99
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	48, 108
CspAI	ACCGGT	1 cut(s)	521
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	8 cut(s)	38, 101, 206, 263, 347, 445, 491, 602
CviKI_1	RGCY	8 cut(s)	38, 101, 206, 263, 347, 445, 491, 602
CviQI	GTAC	2 cut(s)	48, 108
DdeI	CTNAG	1 cut(s)	534
DpnI	GATC	3 cut(s)	136, 255, 412
DpnII	GATC	3 cut(s)	134, 253, 410
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	446
EcoO109I	RGGNCCY	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	447
FaeI	CATG	1 cut(s)	167
FaiI	YATR	8 cut(s)	45, 78, 165, 173, 188, 327, 530, 619
FatI	CATG	1 cut(s)	163
Fnu4HI	GCNGC	7 cut(s)	201, 204, 207, 264, 348, 462, 600
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	447
Fsp4HI	GCNGC	7 cut(s)	201, 204, 207, 264, 348, 462, 600
GluI	GCNGC	7 cut(s)	201, 204, 207, 264, 348, 462, 600
GsaI	CCCAGC	1 cut(s)	491
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	3 cut(s)	384, 522, 612
HgaI	GACGC	1 cut(s)	107
Hin1II	CATG	1 cut(s)	167
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	3 cut(s)	113, 141, 194
HpaII	CCGG	3 cut(s)	384, 522, 612
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	2 cut(s)	6, 71
Hpy188I	TCNGA	1 cut(s)	594
Hpy188III	TCNNGA	3 cut(s)	138, 468, 481
Hpy8I	GTNNAC	2 cut(s)	6, 71
HpyAV	CCTTC	3 cut(s)	77, 532, 589
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4IV	ACGT	1 cut(s)	226
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 197, 206, 314
HpyF3I	CTNAG	1 cut(s)	534
HpySE526I	ACGT	1 cut(s)	226
Hsp92II	CATG	1 cut(s)	167
Kzo9I	GATC	3 cut(s)	134, 253, 410
LmnI	GCTCC	1 cut(s)	248
Lsp1109I	GCAGC	7 cut(s)	187, 193, 215, 250, 334, 448, 611
LweI	GCATC	2 cut(s)	473, 556
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	2 cut(s)	272, 499
MalI	GATC	3 cut(s)	136, 255, 412
MboI	GATC	3 cut(s)	134, 253, 410
MboII	GAAGA	1 cut(s)	401
MflI	RGATCY	2 cut(s)	134, 410
MhlI	GDGCHC	1 cut(s)	447
MluCI	AATT	4 cut(s)	218, 422, 471, 511
MlyI	GAGTC	2 cut(s)	122, 135
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	3 cut(s)	391, 397, 434
MseI	TTAA	2 cut(s)	212, 515
MspA1I	CMGCKG	2 cut(s)	38, 206
MspI	CCGG	3 cut(s)	384, 522, 612
MspR9I	CCNGG	2 cut(s)	177, 385
Mva1269I	GAATGC	1 cut(s)	238
MvaI	CCWGG	1 cut(s)	177
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	4 cut(s)	21, 197, 206, 314
NciI	CCSGG	1 cut(s)	385
NdeII	GATC	3 cut(s)	134, 253, 410
NlaIII	CATG	1 cut(s)	167
NlaIV	GGNNCC	3 cut(s)	136, 295, 485
NmuCI	GTSAC	1 cut(s)	272
PctI	GAATGC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	194
PinAI	ACCGGT	1 cut(s)	521
PkrI	GCNGC	7 cut(s)	202, 205, 208, 265, 349, 463, 601
PleI	GAGTC	2 cut(s)	121, 135
PpsI	GAGTC	2 cut(s)	121, 135
PshBI	ATTAAT	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	175
PspFI	CCCAGC	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	3 cut(s)	136, 295, 485
PspPI	GGNCC	1 cut(s)	99
PstI	CTGCAG	1 cut(s)	205
PstNI	CAGNNNCTG	1 cut(s)	197
PsuI	RGATCY	2 cut(s)	134, 410
PvuII	CAGCTG	2 cut(s)	38, 206
RsaI	GTAC	2 cut(s)	49, 109
RsaNI	GTAC	2 cut(s)	48, 108
SaqAI	TTAA	2 cut(s)	212, 515
SatI	GCNGC	7 cut(s)	201, 204, 207, 264, 348, 462, 600
Sau3AI	GATC	3 cut(s)	134, 253, 410
Sau96I	GGNCC	1 cut(s)	99
SchI	GAGTC	2 cut(s)	122, 135
ScrFI	CCNGG	2 cut(s)	177, 385
SduI	GDGCHC	1 cut(s)	447
SetI	ASST	5 cut(s)	40, 208, 229, 299, 493
SfaNI	GCATC	2 cut(s)	473, 556
SfcI	CTRYAG	3 cut(s)	201, 237, 298
Sse9I	AATT	4 cut(s)	218, 422, 471, 511
SsiI	CCGC	1 cut(s)	279
StyD4I	CCNGG	2 cut(s)	175, 383
TaaI	ACNGT	1 cut(s)	302
TaiI	ACGT	1 cut(s)	229
TaqI	TCGA	3 cut(s)	366, 495, 573
TasI	AATT	4 cut(s)	218, 422, 471, 511
TatI	WGTACW	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	2 cut(s)	212, 515
Tru9I	TTAA	2 cut(s)	212, 515
TscAI	CASTG	3 cut(s)	25, 307, 568
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	7 cut(s)	200, 203, 206, 263, 347, 461, 599
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	2 cut(s)	65, 230
TspGWI	ACGGA	2 cut(s)	56, 453
TspRI	CASTG	3 cut(s)	25, 307, 568
VspI	ATTAAT	1 cut(s)	212
XapI	RAATTY	1 cut(s)	218
XcmI	CCANNNNNNNNNTGG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.