RLG00000016561

Belongs to the eIF-2B alpha beta delta subunits family. MtnA subfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
7664643 .. 7666878
2236 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016561

Sequence Viewer

Length: 1131 bp
ATGGCGCCGGAATCCAACTTCTCCGACGGAATTGAATCCGGCAACTCTCTCCAGGCTATCTGCTACAAGCGTGGCTCGCTTCAATTACTCGATCAGACAAAACTCCCTCTGCAAAGTACATACTTGAATATCCGGGACTCCACAGATGGATGGCATGCAATCAAAGACATGGTGGTGAGGGGAGCACCGGCCATTGCTATAGCCGCGGCGCTGTCTTTGGCTGTGGAAGTGTTTAATTTGGAGGATTTTAATGGAACTCCGGACGAAGCTTGTTCTTTCCTTATAATGAAACTGGAGTATTTAGTATCCAGCCGGCCGACCGCTGTGAACCTTTCGGATGCTGCAACTAAATTGAAACAGGTTGCAGCCAAGGTTGCCGCGACTAGTTCAGATTCCAAGAGTGTGTTTGAGGCATATATTGAAGCTTCTGAAAGCATGCTCAAGGATGATGTTGATTCAAACAAAGCTATTGGGTCTCATGGAGCGGCTTTTATCCAGCACCACCTTGAAAATTCTACGAGGATTTCTATGTTGACCCACTGCAACACTGGCAGCCTTGCAACGGCTGGTTATGGTACTGCTCTTGGTGTTATACGTTCACTTCATACGGAAGGAGTTTTAGAAAGGGCCTATTGCACAGAGACACGCCCATTCAACCAAGGATCAAGACTCACAGCATTTGAGTTGGTGCATGATAACATACCTGCCACTCTTATAGCAGATTCGGCTGCAGCAGCATTAATGAAGGATGGAAAGGTGAATGCCGTTGTTGTTGGAGCAGACCGTGTGGCTGCGAATGGTGACACCGCTAACAAGATAGGTACCTACAGTCTTGCCGTCAGTGCAAAGTACCACAACATACCATTCTTTGTGGCTGCACCACTGACTTCCGTTGACTTATCTCTTTCTTCTGGAGAAGCGATAGTGATAGAGGAAAGATCCCCAAAGGAATTGTTGAACACGCATGGAGGACTCGGGGAACAAGTTGCTGCATCTGGAATCTCTGTCTGGAACCCAGCCTTTGATGTCACTCCCGCTAGCTTAATATCTGGCATCATAACAGAAAAGGGTGTCATCACGAAAAAGGGAACGGATGCTTTTGACATAAAGGATTTTGTTCAAAAGGCCTGA

Protein Analysis

377

Amino Acids

39.72

Weight (kDa)

5.31

Isoelectric Point (pI)

35.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IF-2B PF01008 59 - 360 2.5e-77 Initiation factor 2 subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 284
Acc36I ACCTGC 1 cut(s) 712
Acc65I GGTACC 1 cut(s) 821
AccB1I GGYRCC 2 cut(s) 4, 821
AccBSI CCGCTC 1 cut(s) 485
AccII CGCG 2 cut(s) 206, 380
AccIII TCCGGA 1 cut(s) 259
AciI CCGC 7 cut(s) 204, 206, 321, 378, 485, 807, 1035
AclWI GGATC 2 cut(s) 670, 933
AcoI YGGCCR 2 cut(s) 189, 314
AcsI RAATTY 1 cut(s) 511
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 118, 577, 823, 851
AfiI CCNNNNNNNGG 1 cut(s) 562
AhlI ACTAGT 1 cut(s) 383
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 4 cut(s) 269, 425, 467, 1041
AluI AGCT 4 cut(s) 269, 425, 467, 1041
Alw21I GWGCWC 1 cut(s) 187
Alw26I GTCTC 2 cut(s) 480, 635
AlwI GGATC 2 cut(s) 670, 933
Ama87I CYCGRG 1 cut(s) 974
Aor13HI TCCGGA 1 cut(s) 259
AoxI GGCC 4 cut(s) 189, 314, 627, 1125
ApeKI GCWGC 9 cut(s) 341, 365, 552, 728, 731, 734, 791, 875, 989
ApoI RAATTY 1 cut(s) 511
AseI ATTAAT 1 cut(s) 740
Asp718I GGTACC 1 cut(s) 821
AspLEI GCGC 2 cut(s) 7, 211
AspS9I GGNCC 1 cut(s) 627
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 3 cut(s) 187, 769, 812
AsuNHI GCTAGC 1 cut(s) 1037
AvaI CYCGRG 1 cut(s) 974
BanI GGYRCC 2 cut(s) 4, 821
Bbv12I GWGCWC 1 cut(s) 187
BbvI GCAGC 9 cut(s) 328, 377, 564, 715, 743, 746, 778, 862, 976
BccI CCATC 3 cut(s) 140, 144, 743
BceAI ACGGC 3 cut(s) 579, 749, 821
BciT130I CCWGG 1 cut(s) 53
BciVI GTATCC 1 cut(s) 316
BcnI CCSGG 1 cut(s) 134
BcoDI GTCTC 2 cut(s) 480, 635
BcuI ACTAGT 1 cut(s) 383
BfaI CTAG 2 cut(s) 384, 1038
BfmI CTRYAG 3 cut(s) 198, 729, 826
BfoI RGCGCY 2 cut(s) 8, 212
BfuAI ACCTGC 1 cut(s) 712
BfuI GTATCC 1 cut(s) 316
Bme1390I CCNGG 2 cut(s) 53, 134
BmeT110I CYCGRG 1 cut(s) 974
BmgT120I GGNCC 1 cut(s) 627
BmiI GGNNCC 3 cut(s) 6, 823, 1013
BmrFI CCNGG 2 cut(s) 53, 134
BmsI GCATC 4 cut(s) 328, 1001, 1062, 1084
BmtI GCTAGC 1 cut(s) 1041
BpmI CTGGAG 3 cut(s) 35, 314, 933
BpuEI CTTGAG 1 cut(s) 425
BpuMI CCSGG 1 cut(s) 134
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 480
BsaJI CCNNGG 3 cut(s) 204, 369, 658
BsaWI WCCGGW 1 cut(s) 259
Bsc4I CCNNNNNNNGG 1 cut(s) 562
Bse118I RCCGGY 2 cut(s) 187, 312
Bse1I ACTGG 2 cut(s) 297, 553
Bse3DI GCAATG 1 cut(s) 192
BseAI TCCGGA 1 cut(s) 259
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 3 cut(s) 204, 369, 658
BseGI GGATG 5 cut(s) 155, 343, 451, 754, 1099
BseLI CCNNNNNNNGG 1 cut(s) 562
BseMI GCAATG 1 cut(s) 192
BseNI ACTGG 2 cut(s) 297, 553
BseX3I CGGCCG 1 cut(s) 314
BseXI GCAGC 9 cut(s) 328, 377, 564, 715, 743, 746, 778, 862, 976
BseYI CCCAGC 1 cut(s) 1015
BsgI GTGCAG 1 cut(s) 861
Bsh1236I CGCG 2 cut(s) 206, 380
Bsh1285I CGRYCG 2 cut(s) 317, 321
BshFI GGCC 4 cut(s) 191, 316, 629, 1127
BshNI GGYRCC 2 cut(s) 4, 821
BsiEI CGRYCG 2 cut(s) 317, 321
BsiHKAI GWGCWC 1 cut(s) 187
BsiHKCI CYCGRG 1 cut(s) 974
BsiSI CCGG 6 cut(s) 8, 39, 133, 188, 260, 313
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 562
BsmAI GTCTC 2 cut(s) 480, 635
BsmFI GGGAC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 766
BsnI GGCC 4 cut(s) 191, 316, 629, 1127
Bso31I GGTCTC 1 cut(s) 480
BsoBI CYCGRG 1 cut(s) 974
Bsp1286I GDGCHC 1 cut(s) 187
Bsp13I TCCGGA 1 cut(s) 259
Bsp143I GATC 3 cut(s) 91, 662, 938
BspACI CCGC 7 cut(s) 204, 206, 321, 378, 485, 807, 1035
BspANI GGCC 4 cut(s) 191, 316, 629, 1127
BspEI TCCGGA 1 cut(s) 259
BspFNI CGCG 2 cut(s) 206, 380
BspLI GGNNCC 3 cut(s) 6, 823, 1013
BspMAI CTGCAG 1 cut(s) 733
BspMI ACCTGC 1 cut(s) 712
BspOI GCTAGC 1 cut(s) 1041
BspPI GGATC 2 cut(s) 670, 933
BspT107I GGYRCC 2 cut(s) 4, 821
BspTNI GGTCTC 1 cut(s) 480
BsrBI CCGCTC 1 cut(s) 485
BsrDI GCAATG 1 cut(s) 192
BsrFI RCCGGY 2 cut(s) 187, 312
BsrI ACTGG 2 cut(s) 297, 553
BssAI RCCGGY 2 cut(s) 187, 312
BssECI CCNNGG 3 cut(s) 204, 369, 658
BssMI GATC 3 cut(s) 91, 662, 938
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 369, 658
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 2 cut(s) 785, 830
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 5 cut(s) 77, 156, 314, 437, 1039
BstDSI CCRYGG 1 cut(s) 204
BstF5I GGATG 5 cut(s) 155, 343, 451, 754, 1099
BstFNI CGCG 2 cut(s) 206, 380
BstH2I RGCGCY 2 cut(s) 8, 212
BstHHI GCGC 2 cut(s) 7, 211
BstKTI GATC 3 cut(s) 94, 665, 941
BstMAI GTCTC 2 cut(s) 480, 635
BstMBI GATC 3 cut(s) 91, 662, 938
BstMCI CGRYCG 2 cut(s) 317, 321
BstMWI GCNNNNNNNGC 7 cut(s) 76, 203, 374, 549, 725, 734, 842
BstNI CCWGG 1 cut(s) 53
BstNSI RCATGY 2 cut(s) 158, 439
BstSCI CCNGG 2 cut(s) 51, 132
BstSFI CTRYAG 3 cut(s) 198, 729, 826
BstUI CGCG 2 cut(s) 206, 380
BstV1I GCAGC 9 cut(s) 328, 377, 564, 715, 743, 746, 778, 862, 976
BstX2I RGATCY 1 cut(s) 938
BstYI RGATCY 1 cut(s) 938
BstZI CGGCCG 1 cut(s) 314
BsuI GTATCC 1 cut(s) 316
BsuRI GGCC 4 cut(s) 191, 316, 629, 1127
BtgI CCRYGG 1 cut(s) 204
BtsCI GGATG 5 cut(s) 155, 343, 451, 754, 1099
BtsI GCAGTG 1 cut(s) 538
BtsIMutI CAGTG 4 cut(s) 538, 546, 847, 881
BveI ACCTGC 1 cut(s) 712
Cac8I GCNNGC 5 cut(s) 77, 156, 314, 437, 1039
CfoI GCGC 2 cut(s) 7, 211
Cfr10I RCCGGY 2 cut(s) 187, 312
Cfr13I GGNCC 1 cut(s) 627
Cfr42I CCGCGG 1 cut(s) 207
Csp6I GTAC 4 cut(s) 117, 576, 822, 850
CviAII CATG 6 cut(s) 155, 169, 436, 479, 692, 965
CviQI GTAC 4 cut(s) 117, 576, 822, 850
DinI GGCGCC 1 cut(s) 6
DpnI GATC 3 cut(s) 93, 664, 940
DpnII GATC 3 cut(s) 91, 662, 938
EaeI YGGCCR 2 cut(s) 189, 314
EagI CGGCCG 1 cut(s) 314
EclXI CGGCCG 1 cut(s) 314
Eco130I CCWWGG 2 cut(s) 369, 658
Eco147I AGGCCT 1 cut(s) 1127
Eco31I GGTCTC 1 cut(s) 480
Eco52I CGGCCG 1 cut(s) 314
Eco88I CYCGRG 1 cut(s) 974
EcoO109I RGGNCCY 1 cut(s) 627
EcoRII CCWGG 1 cut(s) 51
EcoT14I CCWWGG 2 cut(s) 369, 658
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 369, 658
FaeI CATG 6 cut(s) 158, 172, 439, 482, 695, 968
FaqI GGGAC 1 cut(s) 149
FatI CATG 6 cut(s) 154, 168, 435, 478, 691, 964
FauI CCCGC 1 cut(s) 1042
FokI GGATG 5 cut(s) 162, 350, 458, 761, 1106
FspBI CTAG 2 cut(s) 384, 1038
GlaI GCGC 2 cut(s) 6, 210
GsaI CCCAGC 1 cut(s) 1019
GsuI CTGGAG 3 cut(s) 35, 314, 933
HaeII RGCGCY 2 cut(s) 8, 212
HaeIII GGCC 4 cut(s) 191, 316, 629, 1127
HapII CCGG 6 cut(s) 8, 39, 133, 188, 260, 313
HhaI GCGC 2 cut(s) 7, 211
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 6 cut(s) 158, 172, 439, 482, 695, 968
Hin6I GCGC 2 cut(s) 5, 209
HinP1I GCGC 2 cut(s) 5, 209
HincII GTYRAC 2 cut(s) 534, 895
HindII GTYRAC 2 cut(s) 534, 895
HindIII AAGCTT 2 cut(s) 267, 423
HinfI GANTC 9 cut(s) 11, 35, 137, 392, 455, 669, 722, 972, 999
HpaII CCGG 6 cut(s) 8, 39, 133, 188, 260, 313
HphI GGTGA 3 cut(s) 187, 769, 812
Hpy166II GTNNAC 4 cut(s) 328, 534, 599, 895
Hpy188I TCNGA 5 cut(s) 25, 96, 337, 391, 430
Hpy188III TCNNGA 6 cut(s) 260, 666, 912, 996, 1009, 1078
Hpy8I GTNNAC 4 cut(s) 328, 534, 599, 895
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 2 cut(s) 605, 739
HpyCH4III ACNGT 2 cut(s) 785, 830
HpyCH4IV ACGT 1 cut(s) 595
HpyF10VI GCNNNNNNNGC 7 cut(s) 76, 203, 374, 549, 725, 734, 842
HpySE526I ACGT 1 cut(s) 595
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 6 cut(s) 158, 172, 439, 482, 695, 968
HspAI GCGC 2 cut(s) 5, 209
KasI GGCGCC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 259
KpnI GGTACC 1 cut(s) 825
KroI GCCGGC 1 cut(s) 312
KroNI GCCGGC 1 cut(s) 314
KspI CCGCGG 1 cut(s) 207
Kzo9I GATC 3 cut(s) 91, 662, 938
LmnI GCTCC 3 cut(s) 182, 482, 776
Lsp1109I GCAGC 9 cut(s) 328, 377, 564, 715, 743, 746, 778, 862, 976
LweI GCATC 4 cut(s) 328, 1001, 1062, 1084
MaeI CTAG 2 cut(s) 384, 1038
MaeII ACGT 1 cut(s) 595
MaeIII GTNAC 2 cut(s) 800, 1027
MalI GATC 3 cut(s) 93, 664, 940
MbiI CCGCTC 1 cut(s) 485
MboI GATC 3 cut(s) 91, 662, 938
MboII GAAGA 1 cut(s) 900
MflI RGATCY 1 cut(s) 938
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 6 cut(s) 30, 83, 235, 350, 511, 950
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 3 cut(s) 131, 663, 966
MmeI TCCRAC 3 cut(s) 39, 48, 754
MnlI CCTC 7 cut(s) 117, 171, 235, 403, 513, 925, 962
MroI TCCGGA 1 cut(s) 259
MroNI GCCGGC 1 cut(s) 312
MseI TTAA 4 cut(s) 234, 249, 740, 1043
MslI CAYNNNNRTG 1 cut(s) 173
MspA1I CMGCKG 2 cut(s) 206, 323
MspI CCGG 6 cut(s) 8, 39, 133, 188, 260, 313
MspR9I CCNGG 2 cut(s) 53, 134
Mva1269I GAATGC 1 cut(s) 766
MvaI CCWGG 1 cut(s) 53
MvnI CGCG 2 cut(s) 206, 380
MwoI GCNNNNNNNGC 7 cut(s) 76, 203, 374, 549, 725, 734, 842
NaeI GCCGGC 1 cut(s) 314
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 134
NdeII GATC 3 cut(s) 91, 662, 938
NgoMIV GCCGGC 1 cut(s) 312
NheI GCTAGC 1 cut(s) 1037
NlaIII CATG 6 cut(s) 158, 172, 439, 482, 695, 968
NlaIV GGNNCC 3 cut(s) 6, 823, 1013
NmuCI GTSAC 2 cut(s) 800, 1027
NspI RCATGY 2 cut(s) 158, 439
PaeI GCATGC 2 cut(s) 158, 439
PceI AGGCCT 1 cut(s) 1127
PctI GAATGC 1 cut(s) 766
PdiI GCCGGC 1 cut(s) 314
PfeI GAWTC 6 cut(s) 11, 35, 392, 455, 722, 999
PfoI TCCNGGA 1 cut(s) 132
PleI GAGTC 3 cut(s) 131, 663, 966
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 3 cut(s) 131, 663, 966
PshBI ATTAAT 1 cut(s) 740
PsiI TTATAA 1 cut(s) 284
Psp6I CCWGG 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 1015
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 3 cut(s) 6, 823, 1013
PspPI GGNCC 1 cut(s) 627
PstI CTGCAG 1 cut(s) 733
PsuI RGATCY 1 cut(s) 938
RsaI GTAC 4 cut(s) 118, 577, 823, 851
RsaNI GTAC 4 cut(s) 117, 576, 822, 850
RseI CAYNNNNRTG 1 cut(s) 173
SacII CCGCGG 1 cut(s) 207
SaqAI TTAA 4 cut(s) 234, 249, 740, 1043
Sau3AI GATC 3 cut(s) 91, 662, 938
Sau96I GGNCC 1 cut(s) 627
SchI GAGTC 3 cut(s) 131, 663, 966
ScrFI CCNGG 2 cut(s) 53, 134
SduI GDGCHC 1 cut(s) 187
SfaNI GCATC 4 cut(s) 328, 1001, 1062, 1084
SfcI CTRYAG 3 cut(s) 198, 729, 826
SfoI GGCGCC 1 cut(s) 6
Sfr303I CCGCGG 1 cut(s) 207
SgrBI CCGCGG 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
SpeI ACTAGT 1 cut(s) 383
SphI GCATGC 2 cut(s) 158, 439
Sse9I AATT 6 cut(s) 30, 83, 235, 350, 511, 950
SseBI AGGCCT 1 cut(s) 1127
SsiI CCGC 7 cut(s) 204, 206, 321, 378, 485, 807, 1035
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 2 cut(s) 384, 1038
StuI AGGCCT 1 cut(s) 1127
StyD4I CCNGG 2 cut(s) 51, 132
StyI CCWWGG 2 cut(s) 369, 658
TaaI ACNGT 2 cut(s) 785, 830
TaiI ACGT 1 cut(s) 598
TaqI TCGA 1 cut(s) 90
TasI AATT 6 cut(s) 30, 83, 235, 350, 511, 950
TatI WGTACW 1 cut(s) 116
TauI GCSGC 4 cut(s) 206, 209, 380, 488
TfiI GAWTC 6 cut(s) 11, 35, 392, 455, 722, 999
Tru1I TTAA 4 cut(s) 234, 249, 740, 1043
Tru9I TTAA 4 cut(s) 234, 249, 740, 1043
TscAI CASTG 4 cut(s) 545, 553, 847, 888
TseFI GTSAC 2 cut(s) 800, 1027
TseI GCWGC 9 cut(s) 341, 365, 552, 728, 731, 734, 791, 875, 989
Tsp45I GTSAC 2 cut(s) 800, 1027
TspDTI ATGAA 3 cut(s) 302, 593, 758
TspGWI ACGGA 4 cut(s) 42, 623, 880, 1106
TspRI CASTG 4 cut(s) 545, 553, 847, 888
VspI ATTAAT 1 cut(s) 740
XapI RAATTY 1 cut(s) 511
XceI RCATGY 2 cut(s) 158, 439
XcmI CCANNNNNNNNNTGG 1 cut(s) 545
XspI CTAG 2 cut(s) 384, 1038
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.