Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007347

Physical Location & Seq

Genomic Coordinates Reverse (-)

3882215 .. 3882958

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0050400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAAGCTTGGTTCTTGGTGGGCATTCATAGGAGGCGTTGTAGCATCTGAGACCCTATGCCAAGACCACTCTGCTTCTTTCCCCCCTCACAATTTCACATTTCCTCCTATTCTCAAAGCCTGTGCCAAGCTCCGATCAGCCCCTCAAGTCCAAATGGTCCACACCCATCTCCTGAAAATCGGGTTCTTCTCCGACGTCTACGCTGTCACCGCTCTCACGGACGCTTCCATGAAGCTCAACCTCATGGACGATGCACTCAAGGTGTTCGACGAAATGCCTCACCGAAACTTGGCTCCTGTAAACACTGTGATTTCCGGGTTGTTGCATAATGGACATTGCATAGAGGCTTTAAAGGTGTGCAAGAGCGTTGGTTTTGGAGGGCTCGGGTTGAATTCAGTTACTATAGCTAGTGTGTTTTCGGCGTGTGACAATGCGAAGCAGGGGATGGGAATGGATTGCGTGGCGGTGAAGCTCGGGGTTGAGAGTGATGTTTATGTTGCTACCTCAGCTGTGAGTATGTATTGGAGCTGTGGGGAGTTGGTTTCTGCTGCAAAGTTGTTTGAACATATGCCTGTCAAGAATGTGGTGAGTTATAATGCTTTTATAACAGGGCTTTTGCAGAATGGGGTTCCAAGGGTGGTGTTGGATGTGTTTAAGAAAATGAGAGCATGTAGAGGTGAAAATTCGAATTCACTGACATTGGTTTCGGTTCTTTCTGCTTGTGCTAGTGTTTTGTATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000302 GO:0003674 GO:0003824 GO:0005575 GO:0005911 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009506 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017144 GO:0019509 GO:0019752 GO:0030054 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0046523 GO:0050896 GO:0051716 GO:0055044 GO:0070887 GO:0071241 GO:0071248 GO:0071265 GO:0071267 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0097366 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

IF-2B

Protein Analysis

247

Amino Acids

26.52

Weight (kDa)

8.06

Isoelectric Point (pI)

34.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	193 - 242	1.4e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05830 AT2G05830 AT2G05830 AT2G05830
fragaria_vesca	FvH4_1g08940
malus_domestica	MD02G1094700.v1.1 MD15G1219600.v1.1
prunus_persica	Prupe.7G196300_v2.0.a1 Prupe.7G196300_v2.0.a1
pyrus_communis	pycom02g07490 pycom15g19470
rosa_chinensis	RchiOBHm_Chr2g0095391
rosa_laevigata	RLG00000016561
rosa_multiflora	Rmu_ssc0000183.1_g000040 Rmu_ssc0000183.1_g000041 Rmu_ssc0000183.1_g000042
rosa_roxburghii	Rroxscaffold_2G00146410
rosa_rugosa	Rorug02G0050400
rosa_samantha	Rh2AG098600 Rh2BG099800 Rh2CG101800 Rh2CG105700 Rh2DG099400
rosa_wichuraiana	Rw2G007440 Rw2G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	594, 605
AatII	GACGTC	1 cut(s)	198
AccBSI	CCGCTC	1 cut(s)	212
AccI	GTMKAC	1 cut(s)	198
AciI	CCGC	2 cut(s)	210, 464
AcsI	RAATTY	3 cut(s)	391, 682, 688
AcyI	GRCGYC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	289
AgsI	TTSAA	2 cut(s)	391, 563
AluBI	AGCT	7 cut(s)	7, 130, 235, 407, 472, 509, 528
AluI	AGCT	7 cut(s)	7, 130, 235, 407, 472, 509, 528
Alw26I	GTCTC	1 cut(s)	44
Ama87I	CYCGRG	2 cut(s)	383, 473
ApeKI	GCWGC	1 cut(s)	548
ApoI	RAATTY	3 cut(s)	391, 682, 688
ArsI	GACNNNNNNTTYG	2 cut(s)	688, 720
AspS9I	GGNCC	1 cut(s)	157
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	5 cut(s)	199, 272, 478, 598, 689
AsuII	TTCGAA	1 cut(s)	686
AvaI	CYCGRG	2 cut(s)	383, 473
AvaII	GGWCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	384
BbvCI	CCTCAGC	1 cut(s)	505
BbvI	GCAGC	1 cut(s)	535
BccI	CCATC	2 cut(s)	174, 439
BcnI	CCSGG	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	2 cut(s)	408, 726
BfmI	CTRYAG	1 cut(s)	402
BisI	GCNGC	1 cut(s)	549
BlsI	GCNGC	1 cut(s)	550
Bme1390I	CCNGG	1 cut(s)	316
Bme18I	GGWCC	1 cut(s)	157
BmeT110I	CYCGRG	2 cut(s)	383, 473
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	2 cut(s)	294, 630
BmrFI	CCNGG	1 cut(s)	316
BmsI	GCATC	2 cut(s)	53, 241
Bpu10I	CCTNAGC	1 cut(s)	505
Bpu14I	TTCGAA	1 cut(s)	686
BpuEI	CTTGAG	2 cut(s)	129, 242
BpuMI	CCSGG	1 cut(s)	316
BsaHI	GRCGYC	1 cut(s)	195
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	632
BsaXI	ACNNNNNCTCC	4 cut(s)	24, 54, 88, 118
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse3DI	GCAATG	1 cut(s)	334
BseDI	CCNNGG	1 cut(s)	632
BseGI	GGATG	2 cut(s)	450, 652
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	2 cut(s)	39, 519
BseXI	GCAGC	1 cut(s)	535
BsiHKCI	CYCGRG	2 cut(s)	383, 473
BsiSI	CCGG	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	289
BsmAI	GTCTC	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	23
Bso31I	GGTCTC	1 cut(s)	44
BsoBI	CYCGRG	2 cut(s)	383, 473
Bsp119I	TTCGAA	1 cut(s)	686
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	1 cut(s)	134
BspACI	CCGC	2 cut(s)	210, 464
BspCNI	CTCAG	2 cut(s)	40, 518
BspLI	GGNNCC	2 cut(s)	294, 630
BspT104I	TTCGAA	1 cut(s)	686
BspTNI	GGTCTC	1 cut(s)	44
BsrBI	CCGCTC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	632
BssMI	GATC	1 cut(s)	134
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	632
Bst4CI	ACNGT	1 cut(s)	307
BstACI	GRCGYC	1 cut(s)	195
BstBI	TTCGAA	1 cut(s)	686
BstDEI	CTNAG	2 cut(s)	48, 505
BstF5I	GGATG	2 cut(s)	450, 652
BstKTI	GATC	1 cut(s)	137
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	134
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 506
BstNSI	RCATGY	1 cut(s)	672
BstSCI	CCNGG	1 cut(s)	314
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	535
BtsCI	GGATG	2 cut(s)	450, 652
BtsIMutI	CAGTG	2 cut(s)	303, 692
Cfr13I	GGNCC	1 cut(s)	157
CseI	GACGC	1 cut(s)	230
CviAII	CATG	3 cut(s)	229, 244, 669
DdeI	CTNAG	2 cut(s)	48, 505
DpnI	GATC	1 cut(s)	136
DpnII	GATC	1 cut(s)	134
DraI	TTTAAA	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	632
Eco24I	GRGCYC	1 cut(s)	384
Eco31I	GGTCTC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	157
Eco88I	CYCGRG	2 cut(s)	383, 473
EcoRI	GAATTC	2 cut(s)	391, 688
EcoT14I	CCWWGG	1 cut(s)	632
EcoT38I	GRGCYC	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	632
FaeI	CATG	3 cut(s)	232, 247, 672
FatI	CATG	3 cut(s)	228, 243, 668
FauNDI	CATATG	1 cut(s)	567
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	1 cut(s)	549
FokI	GGATG	2 cut(s)	457, 659
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	1 cut(s)	549
FspBI	CTAG	2 cut(s)	408, 726
GluI	GCNGC	1 cut(s)	549
HapII	CCGG	1 cut(s)	315
HgaI	GACGC	1 cut(s)	230
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	232, 247, 672
HindIII	AAGCTT	1 cut(s)	5
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	5 cut(s)	199, 272, 478, 598, 689
Hpy166II	GTNNAC	3 cut(s)	160, 199, 301
Hpy188I	TCNGA	4 cut(s)	49, 134, 193, 743
Hpy188III	TCNNGA	2 cut(s)	172, 577
Hpy8I	GTNNAC	3 cut(s)	160, 199, 301
Hpy99I	CGWCG	2 cut(s)	197, 272
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	6 cut(s)	254, 325, 339, 360, 551, 619
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 506
HpyF3I	CTNAG	2 cut(s)	48, 505
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	3 cut(s)	232, 247, 672
Kzo9I	GATC	1 cut(s)	134
LmnI	GCTCC	3 cut(s)	135, 298, 525
LpnPI	CCDG	7 cut(s)	133, 185, 309, 328, 425, 585, 594
Lsp1109I	GCAGC	1 cut(s)	535
LweI	GCATC	2 cut(s)	53, 241
MaeI	CTAG	2 cut(s)	408, 726
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	3 cut(s)	205, 397, 425
MalI	GATC	1 cut(s)	136
MbiI	CCGCTC	1 cut(s)	212
MboI	GATC	1 cut(s)	134
MboII	GAAGA	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	4 cut(s)	91, 391, 682, 688
MmeI	TCCRAC	2 cut(s)	216, 624
MseI	TTAA	2 cut(s)	350, 654
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	1 cut(s)	316
Mva1269I	GAATGC	1 cut(s)	23
MwoI	GCNNNNNNNGC	2 cut(s)	209, 506
NciI	CCSGG	1 cut(s)	316
NdeI	CATATG	1 cut(s)	567
NdeII	GATC	1 cut(s)	134
NlaIII	CATG	3 cut(s)	232, 247, 672
NlaIV	GGNNCC	2 cut(s)	294, 630
NmuCI	GTSAC	2 cut(s)	205, 425
NspI	RCATGY	1 cut(s)	672
NspV	TTCGAA	1 cut(s)	686
PctI	GAATGC	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	550
PsiI	TTATAA	2 cut(s)	594, 605
PspN4I	GGNNCC	2 cut(s)	294, 630
PspPI	GGNCC	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	509
SaqAI	TTAA	2 cut(s)	350, 654
SatI	GCNGC	1 cut(s)	549
Sau3AI	GATC	1 cut(s)	134
Sau96I	GGNCC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	316
SduI	GDGCHC	1 cut(s)	384
SfaNI	GCATC	2 cut(s)	53, 241
SfcI	CTRYAG	1 cut(s)	402
SfuI	TTCGAA	1 cut(s)	686
SinI	GGWCC	1 cut(s)	157
SmlI	CTYRAG	2 cut(s)	144, 257
SmoI	CTYRAG	2 cut(s)	144, 257
Sse9I	AATT	4 cut(s)	91, 391, 682, 688
SsiI	CCGC	2 cut(s)	210, 464
SspMI	CTAG	2 cut(s)	408, 726
StyD4I	CCNGG	1 cut(s)	314
StyI	CCWWGG	1 cut(s)	632
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	2 cut(s)	267, 686
TasI	AATT	4 cut(s)	91, 391, 682, 688
Tru1I	TTAA	2 cut(s)	350, 654
Tru9I	TTAA	2 cut(s)	350, 654
TscAI	CASTG	2 cut(s)	310, 699
TseFI	GTSAC	2 cut(s)	205, 425
TseI	GCWGC	1 cut(s)	548
Tsp45I	GTSAC	2 cut(s)	205, 425
TspDTI	ATGAA	3 cut(s)	16, 17, 245
TspGWI	ACGGA	1 cut(s)	233
TspRI	CASTG	2 cut(s)	310, 699
VpaK11BI	GGWCC	1 cut(s)	157
XapI	RAATTY	3 cut(s)	391, 682, 688
XceI	RCATGY	1 cut(s)	672
XmiI	GTMKAC	1 cut(s)	198
XspI	CTAG	2 cut(s)	408, 726
ZraI	GACGTC	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.