FvH4_1g08940

Belongs to the eIF-2B alpha beta delta subunits family. MtnA subfamily

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
4740399 .. 4743179
2781 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g08940.t2

Sequence Viewer

Length: 1131 bp
ATGGCACCGGATTCTAACTTCTCCGACGGAATCGACTCCGGCAACTCACTCCAGGCCATCCGCTACAACCGCGGCTCGCTTCAACTACTCGATCAGACAAAGCTCCCCCTGCACAGTACGTACTTGAATATCCGGGACTCCACTGATGGATGGCATGCGATTAAAGATATGGTGGTGCGGGGAGCGCCGGCGATTGCTATAGCGGCGGCGCTGTCGTTGGCGGTGGAGGTGTTCAATTTGGGGGATTTTAACGGAACACCGGACGAAGCTTCTTCTTTCATTATAATGAAGCTGGAGTATTTAGTGTCCAGCCGGCCTACGGCGGTGAACCTTTCGGATGCTGCAACTAAATTGAAGCAGATTGTGGCCAAGGTCGCCGCGAGTGCTTCAGAGTACAAGAGTGTGTTTGAGGCATACATTGAAGCTTCTGAAGTCATGCTCAAGGAAGATGTTGATACAAACAAAGCTATTGGATCTCATGGAGCGACTTTTATCCAGCGTCACCTTGAGAACAGTAAGAGGATTTGTATGTTGACACATTGCAACACTGGCAGCCTTGCAACGGCTGGTTATGGTACTGCTCTTGGTGTTATACGTTCACTTCATACAGAAGGAGTTTTAGAAAGGGCTTATTGTACAGAGACACGCCCATTCAACCAAGGATCAAGACTCACAGCGTATGAGTTGGTGCATGACAACATACCTGCCACTCTTATAGCAGATTCGGCTGCAGCTGCATTAATGAAGGATGGAAAGGTGAATGCCATTGTTGTTGGAGCAGATCGTGTGGCGTCGAATGGTGACACTGCTAACAAGATAGGTACCTACAGTCTTGCCGTCAGTGCAAAGTACCATAACATACCATTCTTTGTGGCTGCACCGCTGACTTCTGTTGACTTGTCTCTTTCTTCTGGAGGAGAGATAGTAATAGAGGAAAGATCCCCGAAGGAATTGTTGAACACACATGGAGGACTCGGGGAACAAGTTGCTGCATCCGGAATCTCTGTCTGGAACCCAGCCTTTGACGTCACTCCTGCTAGCTTAATATATGGCATCATAACAGAAAAGGGTGTCATCACAAAAAAGGGCACTGATGCTTTTGACATAAAGGGTTTTGTTCAAAATGCCTGA

Protein Analysis

377

Amino Acids

39.93

Weight (kDa)

5.62

Isoelectric Point (pI)

30.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IF-2B PF01008 59 - 273 8.2e-44 Initiation factor 2 subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 284
AatII GACGTC 1 cut(s) 1029
Acc36I ACCTGC 1 cut(s) 712
Acc65I GGTACC 1 cut(s) 821
AccB1I GGYRCC 2 cut(s) 4, 821
AccII CGCG 2 cut(s) 72, 380
AccIII TCCGGA 1 cut(s) 995
AclWI GGATC 3 cut(s) 481, 670, 933
AcoI YGGCCR 1 cut(s) 366
AcuI CTGAAG 2 cut(s) 372, 450
AcyI GRCGYC 2 cut(s) 791, 1026
AfaI GTAC 7 cut(s) 118, 122, 395, 577, 637, 823, 851
AfiI CCNNNNNNNGG 2 cut(s) 319, 562
AgsI TTSAA 8 cut(s) 83, 127, 235, 355, 422, 655, 958, 1121
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 7 cut(s) 103, 269, 292, 425, 467, 734, 1041
AluI AGCT 7 cut(s) 103, 269, 292, 425, 467, 734, 1041
Alw26I GTCTC 2 cut(s) 635, 906
AlwI GGATC 3 cut(s) 481, 670, 933
Ama87I CYCGRG 1 cut(s) 974
Aor13HI TCCGGA 1 cut(s) 995
AoxI GGCC 3 cut(s) 54, 314, 366
ApeKI GCWGC 7 cut(s) 341, 552, 728, 731, 734, 875, 989
AseI ATTAAT 1 cut(s) 740
Asp718I GGTACC 1 cut(s) 821
AspLEI GCGC 2 cut(s) 187, 211
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 4 cut(s) 337, 494, 769, 812
AsuNHI GCTAGC 1 cut(s) 1037
AvaI CYCGRG 1 cut(s) 974
BaeGI GKGCMC 1 cut(s) 1091
BalI TGGCCA 1 cut(s) 368
BanI GGYRCC 2 cut(s) 4, 821
BbvI GCAGC 7 cut(s) 328, 564, 715, 721, 743, 862, 976
BccI CCATC 4 cut(s) 65, 140, 144, 743
BceAI ACGGC 3 cut(s) 336, 579, 821
BciT130I CCWGG 1 cut(s) 53
BcnI CCSGG 1 cut(s) 134
BcoDI GTCTC 2 cut(s) 635, 906
BfaI CTAG 1 cut(s) 1038
BfmI CTRYAG 3 cut(s) 198, 729, 826
BfoI RGCGCY 2 cut(s) 188, 212
BfuAI ACCTGC 1 cut(s) 712
Bme1390I CCNGG 2 cut(s) 53, 134
BmeT110I CYCGRG 1 cut(s) 974
BmiI GGNNCC 3 cut(s) 6, 823, 1013
BmrFI CCNGG 2 cut(s) 53, 134
BmsI GCATC 4 cut(s) 328, 1001, 1062, 1084
BmtI GCTAGC 1 cut(s) 1041
BpmI CTGGAG 3 cut(s) 35, 314, 933
BpuEI CTTGAG 2 cut(s) 425, 527
BpuMI CCSGG 1 cut(s) 134
BsaAI YACGTR 1 cut(s) 120
BsaHI GRCGYC 2 cut(s) 791, 1026
BsaJI CCNNGG 3 cut(s) 70, 369, 658
BsaWI WCCGGW 3 cut(s) 7, 259, 995
BsaXI ACNNNNNCTCC 2 cut(s) 909, 939
Bsc4I CCNNNNNNNGG 2 cut(s) 319, 562
Bse118I RCCGGY 2 cut(s) 187, 312
Bse1I ACTGG 1 cut(s) 553
Bse3DI GCAATG 1 cut(s) 538
BseAI TCCGGA 1 cut(s) 995
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 3 cut(s) 70, 369, 658
BseGI GGATG 5 cut(s) 57, 155, 343, 754, 992
BseLI CCNNNNNNNGG 2 cut(s) 319, 562
BseMI GCAATG 1 cut(s) 538
BseNI ACTGG 1 cut(s) 553
BseRI GAGGAG 1 cut(s) 930
BseSI GKGCMC 1 cut(s) 1091
BseXI GCAGC 7 cut(s) 328, 564, 715, 721, 743, 862, 976
BseYI CCCAGC 1 cut(s) 1015
BsgI GTGCAG 2 cut(s) 95, 861
Bsh1236I CGCG 2 cut(s) 72, 380
BshFI GGCC 3 cut(s) 56, 316, 368
BshNI GGYRCC 2 cut(s) 4, 821
BsiHKCI CYCGRG 1 cut(s) 974
BsiSI CCGG 7 cut(s) 8, 39, 133, 188, 260, 313, 996
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 2 cut(s) 319, 562
BsmAI GTCTC 2 cut(s) 635, 906
BsmFI GGGAC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 766
BsnI GGCC 3 cut(s) 56, 316, 368
BsoBI CYCGRG 1 cut(s) 974
Bsp1286I GDGCHC 1 cut(s) 1091
Bsp13I TCCGGA 1 cut(s) 995
Bsp1407I TGTACA 1 cut(s) 635
Bsp143I GATC 5 cut(s) 91, 473, 662, 781, 938
BspANI GGCC 3 cut(s) 56, 316, 368
BspEI TCCGGA 1 cut(s) 995
BspFNI CGCG 2 cut(s) 72, 380
BspLI GGNNCC 3 cut(s) 6, 823, 1013
BspMAI CTGCAG 1 cut(s) 733
BspMI ACCTGC 1 cut(s) 712
BspOI GCTAGC 1 cut(s) 1041
BspPI GGATC 3 cut(s) 481, 670, 933
BspT107I GGYRCC 2 cut(s) 4, 821
BsrDI GCAATG 1 cut(s) 538
BsrFI RCCGGY 2 cut(s) 187, 312
BsrGI TGTACA 1 cut(s) 635
BsrI ACTGG 1 cut(s) 553
BssAI RCCGGY 2 cut(s) 187, 312
BssECI CCNNGG 3 cut(s) 70, 369, 658
BssMI GATC 5 cut(s) 91, 473, 662, 781, 938
BssNI GRCGYC 2 cut(s) 791, 1026
BssT1I CCWWGG 2 cut(s) 369, 658
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 3 cut(s) 116, 515, 830
BstACI GRCGYC 2 cut(s) 791, 1026
BstAUI TGTACA 1 cut(s) 635
BstBAI YACGTR 1 cut(s) 120
BstC8I GCNNGC 5 cut(s) 77, 156, 189, 314, 1039
BstDSI CCRYGG 1 cut(s) 70
BstF5I GGATG 5 cut(s) 57, 155, 343, 754, 992
BstFNI CGCG 2 cut(s) 72, 380
BstH2I RGCGCY 2 cut(s) 188, 212
BstHHI GCGC 2 cut(s) 187, 211
BstKTI GATC 5 cut(s) 94, 476, 665, 784, 941
BstMAI GTCTC 2 cut(s) 635, 906
BstMBI GATC 5 cut(s) 91, 473, 662, 781, 938
BstNI CCWGG 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 2 cut(s) 51, 132
BstSFI CTRYAG 3 cut(s) 198, 729, 826
BstSLI GKGCMC 1 cut(s) 1091
BstSNI TACGTA 1 cut(s) 120
BstUI CGCG 2 cut(s) 72, 380
BstV1I GCAGC 7 cut(s) 328, 564, 715, 721, 743, 862, 976
BstX2I RGATCY 2 cut(s) 473, 938
BstYI RGATCY 2 cut(s) 473, 938
BsuRI GGCC 3 cut(s) 56, 316, 368
BtgI CCRYGG 1 cut(s) 70
BtsCI GGATG 5 cut(s) 57, 155, 343, 754, 992
BtsI GCAGTG 1 cut(s) 804
BtsIMutI CAGTG 5 cut(s) 141, 546, 804, 847, 1089
BveI ACCTGC 1 cut(s) 712
Cac8I GCNNGC 5 cut(s) 77, 156, 189, 314, 1039
CfoI GCGC 2 cut(s) 187, 211
Cfr10I RCCGGY 2 cut(s) 187, 312
Cfr42I CCGCGG 1 cut(s) 73
CseI GACGC 2 cut(s) 488, 780
Csp6I GTAC 7 cut(s) 117, 121, 394, 576, 636, 822, 850
CviAII CATG 5 cut(s) 155, 436, 479, 692, 965
CviQI GTAC 7 cut(s) 117, 121, 394, 576, 636, 822, 850
DpnI GATC 5 cut(s) 93, 475, 664, 783, 940
DpnII GATC 5 cut(s) 91, 473, 662, 781, 938
EaeI YGGCCR 1 cut(s) 366
Eco105I TACGTA 1 cut(s) 120
Eco130I CCWWGG 2 cut(s) 369, 658
Eco57I CTGAAG 2 cut(s) 372, 450
Eco88I CYCGRG 1 cut(s) 974
EcoRII CCWGG 1 cut(s) 51
EcoT14I CCWWGG 2 cut(s) 369, 658
ErhI CCWWGG 2 cut(s) 369, 658
FaeI CATG 5 cut(s) 158, 439, 482, 695, 968
FaqI GGGAC 1 cut(s) 149
FatI CATG 5 cut(s) 154, 435, 478, 691, 964
FauI CCCGC 1 cut(s) 171
FokI GGATG 5 cut(s) 44, 162, 350, 761, 979
FspBI CTAG 1 cut(s) 1038
GlaI GCGC 2 cut(s) 186, 210
GsaI CCCAGC 1 cut(s) 1019
GsuI CTGGAG 3 cut(s) 35, 314, 933
HaeII RGCGCY 2 cut(s) 188, 212
HaeIII GGCC 3 cut(s) 56, 316, 368
HapII CCGG 7 cut(s) 8, 39, 133, 188, 260, 313, 996
HgaI GACGC 2 cut(s) 488, 780
HhaI GCGC 2 cut(s) 187, 211
Hin1I GRCGYC 2 cut(s) 791, 1026
Hin1II CATG 5 cut(s) 158, 439, 482, 695, 968
Hin6I GCGC 2 cut(s) 185, 209
HinP1I GCGC 2 cut(s) 185, 209
HincII GTYRAC 2 cut(s) 534, 895
HindII GTYRAC 2 cut(s) 534, 895
HindIII AAGCTT 2 cut(s) 267, 423
HinfI GANTC 8 cut(s) 11, 30, 35, 137, 669, 722, 972, 999
HpaII CCGG 7 cut(s) 8, 39, 133, 188, 260, 313, 996
HphI GGTGA 4 cut(s) 337, 494, 769, 812
Hpy166II GTNNAC 4 cut(s) 328, 534, 599, 895
Hpy188I TCNGA 5 cut(s) 25, 96, 337, 391, 430
Hpy188III TCNNGA 4 cut(s) 666, 912, 996, 1009
Hpy8I GTNNAC 4 cut(s) 328, 534, 599, 895
Hpy99I CGWCG 2 cut(s) 29, 796
HpyAV CCTTC 3 cut(s) 605, 739, 940
HpyCH4III ACNGT 3 cut(s) 116, 515, 830
HpyCH4IV ACGT 3 cut(s) 119, 595, 1026
HpySE526I ACGT 3 cut(s) 119, 595, 1026
Hsp92I GRCGYC 2 cut(s) 791, 1026
Hsp92II CATG 5 cut(s) 158, 439, 482, 695, 968
HspAI GCGC 2 cut(s) 185, 209
Kpn2I TCCGGA 1 cut(s) 995
KpnI GGTACC 1 cut(s) 825
KroI GCCGGC 2 cut(s) 187, 312
KroNI GCCGGC 2 cut(s) 189, 314
KspI CCGCGG 1 cut(s) 73
Kzo9I GATC 5 cut(s) 91, 473, 662, 781, 938
LmnI GCTCC 4 cut(s) 108, 182, 482, 776
Lsp1109I GCAGC 7 cut(s) 328, 564, 715, 721, 743, 862, 976
LweI GCATC 4 cut(s) 328, 1001, 1062, 1084
MaeI CTAG 1 cut(s) 1038
MaeII ACGT 3 cut(s) 119, 595, 1026
MaeIII GTNAC 3 cut(s) 500, 800, 1027
MalI GATC 5 cut(s) 93, 475, 664, 783, 940
MboI GATC 5 cut(s) 91, 473, 662, 781, 938
MboII GAAGA 3 cut(s) 264, 458, 900
MflI RGATCY 2 cut(s) 473, 938
MhlI GDGCHC 1 cut(s) 1091
MlsI TGGCCA 1 cut(s) 368
MluCI AATT 3 cut(s) 235, 350, 950
MluNI TGGCCA 1 cut(s) 368
MlyI GAGTC 4 cut(s) 29, 131, 663, 966
MmeI TCCRAC 2 cut(s) 48, 754
MnlI CCTC 6 cut(s) 220, 403, 513, 908, 925, 962
Mox20I TGGCCA 1 cut(s) 368
MreI CGCCGGCG 1 cut(s) 187
MroI TCCGGA 1 cut(s) 995
MroNI GCCGGC 2 cut(s) 187, 312
MscI TGGCCA 1 cut(s) 368
MseI TTAA 4 cut(s) 162, 249, 740, 1043
MslI CAYNNNNRTG 1 cut(s) 284
Msp20I TGGCCA 1 cut(s) 368
MspA1I CMGCKG 3 cut(s) 72, 734, 883
MspI CCGG 7 cut(s) 8, 39, 133, 188, 260, 313, 996
MspR9I CCNGG 2 cut(s) 53, 134
Mva1269I GAATGC 1 cut(s) 766
MvaI CCWGG 1 cut(s) 53
MvnI CGCG 2 cut(s) 72, 380
NaeI GCCGGC 2 cut(s) 189, 314
NciI CCSGG 1 cut(s) 134
NdeII GATC 5 cut(s) 91, 473, 662, 781, 938
NgoMIV GCCGGC 2 cut(s) 187, 312
NheI GCTAGC 1 cut(s) 1037
NlaIII CATG 5 cut(s) 158, 439, 482, 695, 968
NlaIV GGNNCC 3 cut(s) 6, 823, 1013
NmuCI GTSAC 3 cut(s) 500, 800, 1027
NspI RCATGY 1 cut(s) 158
PaeI GCATGC 1 cut(s) 158
PctI GAATGC 1 cut(s) 766
PdiI GCCGGC 2 cut(s) 189, 314
PfeI GAWTC 4 cut(s) 11, 30, 722, 999
PfoI TCCNGGA 1 cut(s) 132
PleI GAGTC 4 cut(s) 29, 131, 663, 966
PpsI GAGTC 4 cut(s) 29, 131, 663, 966
Ppu21I YACGTR 1 cut(s) 120
PshBI ATTAAT 1 cut(s) 740
PsiI TTATAA 1 cut(s) 284
Psp6I CCWGG 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 1015
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 3 cut(s) 6, 823, 1013
PstI CTGCAG 1 cut(s) 733
PsuI RGATCY 2 cut(s) 473, 938
PvuII CAGCTG 1 cut(s) 734
RsaI GTAC 7 cut(s) 118, 122, 395, 577, 637, 823, 851
RsaNI GTAC 7 cut(s) 117, 121, 394, 576, 636, 822, 850
RseI CAYNNNNRTG 1 cut(s) 284
SacII CCGCGG 1 cut(s) 73
SaqAI TTAA 4 cut(s) 162, 249, 740, 1043
Sau3AI GATC 5 cut(s) 91, 473, 662, 781, 938
SchI GAGTC 4 cut(s) 29, 131, 663, 966
ScrFI CCNGG 2 cut(s) 53, 134
SduI GDGCHC 1 cut(s) 1091
SfaNI GCATC 4 cut(s) 328, 1001, 1062, 1084
SfcI CTRYAG 3 cut(s) 198, 729, 826
Sfr303I CCGCGG 1 cut(s) 73
SgrAI CRCCGGYG 1 cut(s) 187
SgrBI CCGCGG 1 cut(s) 73
SmiMI CAYNNNNRTG 1 cut(s) 284
SmlI CTYRAG 2 cut(s) 440, 506
SmoI CTYRAG 2 cut(s) 440, 506
SnaBI TACGTA 1 cut(s) 120
SphI GCATGC 1 cut(s) 158
Sse9I AATT 3 cut(s) 235, 350, 950
SspMI CTAG 1 cut(s) 1038
StyD4I CCNGG 2 cut(s) 51, 132
StyI CCWWGG 2 cut(s) 369, 658
TaaI ACNGT 3 cut(s) 116, 515, 830
TaiI ACGT 3 cut(s) 122, 598, 1029
TaqI TCGA 3 cut(s) 33, 90, 794
TasI AATT 3 cut(s) 235, 350, 950
TatI WGTACW 2 cut(s) 393, 635
TauI GCSGC 4 cut(s) 75, 206, 209, 380
TfiI GAWTC 4 cut(s) 11, 30, 722, 999
Tru1I TTAA 4 cut(s) 162, 249, 740, 1043
Tru9I TTAA 4 cut(s) 162, 249, 740, 1043
TscAI CASTG 5 cut(s) 148, 553, 811, 847, 1096
TseFI GTSAC 3 cut(s) 500, 800, 1027
TseI GCWGC 7 cut(s) 341, 552, 728, 731, 734, 875, 989
Tsp45I GTSAC 3 cut(s) 500, 800, 1027
TspDTI ATGAA 4 cut(s) 268, 302, 593, 758
TspGWI ACGGA 2 cut(s) 42, 267
TspRI CASTG 5 cut(s) 148, 553, 811, 847, 1096
VspI ATTAAT 1 cut(s) 740
XceI RCATGY 1 cut(s) 158
XspI CTAG 1 cut(s) 1038
ZraI GACGTC 1 cut(s) 1027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.