Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007347

Physical Location & Seq

Genomic Coordinates Forward (+)

9122168 .. 9127661

Gene Structure 5494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG105700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCTGCACCACTCACTTCTGTCGACTTATCTCTTTCTTATGGAGGAGAGATAGTAATAGAGGAAAGATCCCTAAAGGAATTTTTAAACACTCATGGAGGACTCGGGGAACAAGTTGCTGCATCTGGAATCTCTGTCTGGAACCCAACTTTTGATGTCACTCCTGCTAGCTTAATATCTGGCATCATAACAGAAAAGGGTGTCATCACAAAAAGGGGGACAGATGCTTTTGACATAAAGGATTTTGTTCAAAAGGTCCCATATCCAGTGCCATTTAGACTTCTTGGAGATGAGTCCAAAAGGATGCTCTTACTTAATAGTGCTGAAGGATTCACACAATTGTGTGGAAAAGGCAAAGCAAAGCATCACAATTGGACTGTGTGCTTTGAGGTAACTTTTGGAAGATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000302 GO:0003674 GO:0003824 GO:0005575 GO:0005911 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009506 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017144 GO:0019509 GO:0019752 GO:0030054 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0046523 GO:0050896 GO:0051716 GO:0055044 GO:0070887 GO:0071241 GO:0071248 GO:0071265 GO:0071267 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0097366 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

IF-2B

Protein Analysis

136

Amino Acids

14.8

Weight (kDa)

6.28

Isoelectric Point (pI)

30.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	2 - 70	2.4e-12	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05830 AT2G05830 AT2G05830 AT2G05830
fragaria_vesca	FvH4_1g08940
malus_domestica	MD02G1094700.v1.1 MD15G1219600.v1.1
prunus_persica	Prupe.7G196300_v2.0.a1 Prupe.7G196300_v2.0.a1
pyrus_communis	pycom02g07490 pycom15g19470
rosa_chinensis	RchiOBHm_Chr2g0095391
rosa_laevigata	RLG00000016561
rosa_multiflora	Rmu_ssc0000183.1_g000040 Rmu_ssc0000183.1_g000041 Rmu_ssc0000183.1_g000042
rosa_roxburghii	Rroxscaffold_2G00146410
rosa_rugosa	Rorug02G0050400
rosa_samantha	Rh2AG098600 Rh2BG099800 Rh2CG101800 Rh2CG105700 Rh2DG099400
rosa_wichuraiana	Rw2G007440 Rw2G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	24
AclWI	GGATC	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	345
AgsI	TTSAA	1 cut(s)	251
AleI	CACNNNNGTG	1 cut(s)	340
AluBI	AGCT	1 cut(s)	171
AluI	AGCT	1 cut(s)	171
AlwI	GGATC	1 cut(s)	63
Ama87I	CYCGRG	1 cut(s)	104
ApeKI	GCWGC	2 cut(s)	5, 119
ApoI	RAATTY	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	256
AsuNHI	GCTAGC	1 cut(s)	167
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	256
BbvI	GCAGC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	168
BisI	GCNGC	2 cut(s)	6, 120
BlsI	GCNGC	2 cut(s)	7, 121
Bme18I	GGWCC	1 cut(s)	256
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	2 cut(s)	143, 258
BmsI	GCATC	5 cut(s)	131, 192, 214, 294, 373
BmtI	GCTAGC	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bse1I	ACTGG	1 cut(s)	266
BseGI	GGATG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	266
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	106
BsiHKCI	CYCGRG	1 cut(s)	104
BslFI	GGGAC	2 cut(s)	232, 242
BsmFI	GGGAC	2 cut(s)	232, 242
BsoBI	CYCGRG	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	68
BspLI	GGNNCC	2 cut(s)	143, 258
BspOI	GCTAGC	1 cut(s)	171
BspPI	GGATC	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	266
BssMI	GATC	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	169
BstF5I	GGATG	1 cut(s)	309
BstKTI	GATC	1 cut(s)	71
BstMBI	GATC	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	106
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	256
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	2 cut(s)	5, 171
CviKI_1	RGCY	2 cut(s)	5, 171
DpnI	GATC	1 cut(s)	70
DpnII	GATC	1 cut(s)	68
DraI	TTTAAA	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	256
FaeI	CATG	1 cut(s)	98
FaiI	YATR	5 cut(s)	42, 96, 188, 236, 262
FaqI	GGGAC	2 cut(s)	232, 242
FatI	CATG	1 cut(s)	94
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	2 cut(s)	6, 120
FokI	GGATG	1 cut(s)	316
Fsp4HI	GCNGC	2 cut(s)	6, 120
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	2 cut(s)	6, 120
Hin1II	CATG	1 cut(s)	98
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	4 cut(s)	102, 129, 293, 330
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188III	TCNNGA	2 cut(s)	126, 139
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4V	TGCA	2 cut(s)	8, 122
Hsp92II	CATG	1 cut(s)	98
Kzo9I	GATC	1 cut(s)	68
LpnPI	CCDG	5 cut(s)	111, 124, 165, 177, 279
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	5 cut(s)	131, 192, 214, 294, 373
MaeI	CTAG	1 cut(s)	168
MaeIII	GTNAC	2 cut(s)	157, 391
MalI	GATC	1 cut(s)	70
MboI	GATC	1 cut(s)	68
MfeI	CAATTG	2 cut(s)	338, 370
MflI	RGATCY	1 cut(s)	68
MluCI	AATT	3 cut(s)	80, 338, 370
MlyI	GAGTC	2 cut(s)	96, 302
MnlI	CCTC	4 cut(s)	38, 55, 92, 382
MseI	TTAA	3 cut(s)	86, 173, 315
MslI	CAYNNNNRTG	1 cut(s)	340
MunI	CAATTG	2 cut(s)	338, 370
NdeII	GATC	1 cut(s)	68
NheI	GCTAGC	1 cut(s)	167
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	2 cut(s)	143, 258
NmuCI	GTSAC	1 cut(s)	157
OliI	CACNNNNGTG	1 cut(s)	340
PfeI	GAWTC	2 cut(s)	129, 330
PkrI	GCNGC	2 cut(s)	7, 121
PleI	GAGTC	2 cut(s)	96, 301
PpsI	GAGTC	2 cut(s)	96, 301
PpuMI	RGGWCCY	1 cut(s)	256
Psp5II	RGGWCCY	1 cut(s)	256
PspN4I	GGNNCC	2 cut(s)	143, 258
PspPI	GGNCC	1 cut(s)	256
PspPPI	RGGWCCY	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	68
RseI	CAYNNNNRTG	1 cut(s)	340
SalI	GTCGAC	1 cut(s)	23
SaqAI	TTAA	3 cut(s)	86, 173, 315
SatI	GCNGC	2 cut(s)	6, 120
Sau3AI	GATC	1 cut(s)	68
Sau96I	GGNCC	1 cut(s)	256
SchI	GAGTC	2 cut(s)	96, 302
SetI	ASST	3 cut(s)	173, 258, 393
SfaNI	GCATC	5 cut(s)	131, 192, 214, 294, 373
SinI	GGWCC	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	340
Sse9I	AATT	3 cut(s)	80, 338, 370
SspMI	CTAG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	379
TaqI	TCGA	1 cut(s)	24
TasI	AATT	3 cut(s)	80, 338, 370
TfiI	GAWTC	2 cut(s)	129, 330
Tru1I	TTAA	3 cut(s)	86, 173, 315
Tru9I	TTAA	3 cut(s)	86, 173, 315
TscAI	CASTG	1 cut(s)	273
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	2 cut(s)	5, 119
Tsp45I	GTSAC	1 cut(s)	157
TspRI	CASTG	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	256
XapI	RAATTY	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	24
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.