Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000183.1

Orthogroup ID

OG0007347

Physical Location & Seq

Genomic Coordinates Reverse (-)

200221 .. 201534

Gene Structure 1314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000183.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atggtggttgatattctcgccaaggccagtgtctccaattcttccagaatatgttttatcagattcggctgcagcagcattaatgaaggatggaaaggtgaatgccgttgtgccagtgactcttctcaaactcgaggctactcggctcgcttgagaatgaagaaatcaccgttgccattacagaacgcaagcggcgcgagtgacaccgctaacaagataggtacctacagtcttgccgtcagtgcaaagtaccacaacataccattctttgtggctgcaccgctgacttccgttgacttatctctttcttctggagaagcaatagtaatagaggaaagatccccaaaggaattgttgaacacacatggaggactcggggaacaagttgctgcatctggaatctctgtctggaacccagcctttgatgtcactcctgctagcttaatatctggcatcataacagaaaagggtgtcatcacgaaaaagggtacagatgcttttgacataaaggattttgttcaaaaggcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000302 GO:0003674 GO:0003824 GO:0005575 GO:0005911 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009506 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017144 GO:0019509 GO:0019752 GO:0030054 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0046523 GO:0050896 GO:0051716 GO:0055044 GO:0070887 GO:0071241 GO:0071248 GO:0071265 GO:0071267 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0097366 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

IF-2B

Protein Analysis

176

Amino Acids

18.65

Weight (kDa)

8.69

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05830 AT2G05830 AT2G05830 AT2G05830
fragaria_vesca	FvH4_1g08940
malus_domestica	MD02G1094700.v1.1 MD15G1219600.v1.1
prunus_persica	Prupe.7G196300_v2.0.a1 Prupe.7G196300_v2.0.a1
pyrus_communis	pycom02g07490 pycom15g19470
rosa_chinensis	RchiOBHm_Chr2g0095391
rosa_laevigata	RLG00000016561
rosa_multiflora	Rmu_ssc0000183.1_g000040 Rmu_ssc0000183.1_g000041 Rmu_ssc0000183.1_g000042
rosa_roxburghii	Rroxscaffold_2G00146410
rosa_rugosa	Rorug02G0050400
rosa_samantha	Rh2AG098600 Rh2BG099800 Rh2CG101800 Rh2CG105700 Rh2DG099400
rosa_wichuraiana	Rw2G007440 Rw2G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	221
AccB1I	GGYRCC	1 cut(s)	221
AccII	CGCG	1 cut(s)	197
AciI	CCGC	3 cut(s)	192, 207, 281
AclWI	GGATC	1 cut(s)	333
AfaI	GTAC	3 cut(s)	223, 251, 490
AgsI	TTSAA	2 cut(s)	358, 521
AluBI	AGCT	1 cut(s)	441
AluI	AGCT	1 cut(s)	441
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	333
Ama87I	CYCGRG	2 cut(s)	132, 374
AoxI	GGCC	2 cut(s)	24, 525
ApeKI	GCWGC	5 cut(s)	69, 72, 75, 275, 389
AseI	ATTAAT	1 cut(s)	81
Asp718I	GGTACC	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	110, 159
AsuNHI	GCTAGC	1 cut(s)	437
AvaI	CYCGRG	2 cut(s)	132, 374
BanI	GGYRCC	1 cut(s)	221
BbvI	GCAGC	5 cut(s)	56, 84, 87, 262, 376
BccI	CCATC	1 cut(s)	84
BceAI	ACGGC	2 cut(s)	90, 221
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	438
BfmI	CTRYAG	2 cut(s)	70, 226
BisI	GCNGC	6 cut(s)	70, 73, 76, 193, 276, 390
BlsI	GCNGC	6 cut(s)	71, 74, 77, 194, 277, 391
BmeT110I	CYCGRG	2 cut(s)	132, 374
BmiI	GGNNCC	2 cut(s)	223, 413
BmsI	GCATC	3 cut(s)	401, 462, 484
BmtI	GCTAGC	1 cut(s)	441
BpmI	CTGGAG	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	172
BsaJI	CCNNGG	1 cut(s)	21
Bse1I	ACTGG	2 cut(s)	27, 114
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	1 cut(s)	95
BseNI	ACTGG	2 cut(s)	27, 114
BseXI	GCAGC	5 cut(s)	56, 84, 87, 262, 376
BseYI	CCCAGC	1 cut(s)	415
BsgI	GTGCAG	1 cut(s)	261
Bsh1236I	CGCG	1 cut(s)	197
BshFI	GGCC	2 cut(s)	26, 527
BshNI	GGYRCC	1 cut(s)	221
BsiHKCI	CYCGRG	2 cut(s)	132, 374
BsmAI	GTCTC	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	107
BsnI	GGCC	2 cut(s)	26, 527
BsoBI	CYCGRG	2 cut(s)	132, 374
Bsp143I	GATC	1 cut(s)	338
BspACI	CCGC	3 cut(s)	192, 207, 281
BspANI	GGCC	2 cut(s)	26, 527
BspFNI	CGCG	1 cut(s)	197
BspLI	GGNNCC	2 cut(s)	223, 413
BspMAI	CTGCAG	1 cut(s)	74
BspOI	GCTAGC	1 cut(s)	441
BspPI	GGATC	1 cut(s)	333
BspT107I	GGYRCC	1 cut(s)	221
BsrI	ACTGG	2 cut(s)	27, 114
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	1 cut(s)	338
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	2 cut(s)	171, 230
Bst6I	CTCTTC	1 cut(s)	127
BstC8I	GCNNGC	3 cut(s)	148, 190, 439
BstF5I	GGATG	1 cut(s)	95
BstFNI	CGCG	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	1 cut(s)	341
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	338
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 194, 242
BstSFI	CTRYAG	2 cut(s)	70, 226
BstUI	CGCG	1 cut(s)	197
BstV1I	GCAGC	5 cut(s)	56, 84, 87, 262, 376
BstX2I	RGATCY	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	338
BsuRI	GGCC	2 cut(s)	26, 527
BtsCI	GGATG	1 cut(s)	95
BtsIMutI	CAGTG	3 cut(s)	34, 121, 247
Cac8I	GCNNGC	3 cut(s)	148, 190, 439
CfoI	GCGC	1 cut(s)	197
Csp6I	GTAC	3 cut(s)	222, 250, 489
CviAII	CATG	1 cut(s)	365
CviJI	RGCY	8 cut(s)	26, 69, 138, 146, 275, 419, 441, 527
CviKI_1	RGCY	8 cut(s)	26, 69, 138, 146, 275, 419, 441, 527
CviQI	GTAC	3 cut(s)	222, 250, 489
DpnI	GATC	1 cut(s)	340
DpnII	GATC	1 cut(s)	338
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	21
Eco147I	AGGCCT	1 cut(s)	527
Eco88I	CYCGRG	2 cut(s)	132, 374
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	1 cut(s)	368
FaiI	YATR	5 cut(s)	52, 260, 366, 458, 506
FatI	CATG	1 cut(s)	364
Fnu4HI	GCNGC	6 cut(s)	70, 73, 76, 193, 276, 390
FokI	GGATG	1 cut(s)	102
Fsp4HI	GCNGC	6 cut(s)	70, 73, 76, 193, 276, 390
FspBI	CTAG	1 cut(s)	438
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	6 cut(s)	70, 73, 76, 193, 276, 390
GsaI	CCCAGC	1 cut(s)	419
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	2 cut(s)	26, 527
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	1 cut(s)	368
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	4 cut(s)	63, 119, 372, 399
HphI	GGTGA	2 cut(s)	110, 159
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	1 cut(s)	62
Hpy188III	TCNNGA	5 cut(s)	45, 312, 396, 409, 478
Hpy8I	GTNNAC	1 cut(s)	295
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	2 cut(s)	171, 230
HpyCH4V	TGCA	4 cut(s)	72, 245, 278, 392
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 194, 242
Hsp92II	CATG	1 cut(s)	368
HspAI	GCGC	1 cut(s)	195
KpnI	GGTACC	1 cut(s)	225
Kzo9I	GATC	1 cut(s)	338
LpnPI	CCDG	9 cut(s)	40, 58, 127, 297, 381, 394, 429, 435, 447
Lsp1109I	GCAGC	5 cut(s)	56, 84, 87, 262, 376
LweI	GCATC	3 cut(s)	401, 462, 484
MaeI	CTAG	1 cut(s)	438
MaeIII	GTNAC	3 cut(s)	116, 200, 427
MalI	GATC	1 cut(s)	340
MboI	GATC	1 cut(s)	338
MboII	GAAGA	4 cut(s)	33, 114, 172, 300
MflI	RGATCY	1 cut(s)	338
MluCI	AATT	2 cut(s)	37, 350
MlyI	GAGTC	2 cut(s)	113, 366
MnlI	CCTC	3 cut(s)	128, 325, 362
MseI	TTAA	2 cut(s)	81, 443
MspA1I	CMGCKG	1 cut(s)	283
Mva1269I	GAATGC	1 cut(s)	107
MvnI	CGCG	1 cut(s)	197
MwoI	GCNNNNNNNGC	3 cut(s)	75, 194, 242
NdeII	GATC	1 cut(s)	338
NheI	GCTAGC	1 cut(s)	437
NlaIII	CATG	1 cut(s)	368
NlaIV	GGNNCC	2 cut(s)	223, 413
NmeAIII	GCCGAG	1 cut(s)	122
NmuCI	GTSAC	3 cut(s)	116, 200, 427
PaeR7I	CTCGAG	1 cut(s)	132
PceI	AGGCCT	1 cut(s)	527
PctI	GAATGC	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	63, 399
PkrI	GCNGC	6 cut(s)	71, 74, 77, 194, 277, 391
PleI	GAGTC	2 cut(s)	113, 366
PpsI	GAGTC	2 cut(s)	113, 366
PshBI	ATTAAT	1 cut(s)	81
PspFI	CCCAGC	1 cut(s)	415
PspN4I	GGNNCC	2 cut(s)	223, 413
PspXI	VCTCGAGB	1 cut(s)	132
PstI	CTGCAG	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	338
RsaI	GTAC	3 cut(s)	223, 251, 490
RsaNI	GTAC	3 cut(s)	222, 250, 489
SaqAI	TTAA	2 cut(s)	81, 443
SatI	GCNGC	6 cut(s)	70, 73, 76, 193, 276, 390
Sau3AI	GATC	1 cut(s)	338
SchI	GAGTC	2 cut(s)	113, 366
SetI	ASST	4 cut(s)	100, 223, 227, 443
SfaNI	GCATC	3 cut(s)	401, 462, 484
SfcI	CTRYAG	2 cut(s)	70, 226
Sfr274I	CTCGAG	1 cut(s)	132
SlaI	CTCGAG	1 cut(s)	132
SmlI	CTYRAG	2 cut(s)	132, 151
SmoI	CTYRAG	2 cut(s)	132, 151
Sse9I	AATT	2 cut(s)	37, 350
SseBI	AGGCCT	1 cut(s)	527
SsiI	CCGC	3 cut(s)	192, 207, 281
SspMI	CTAG	1 cut(s)	438
StuI	AGGCCT	1 cut(s)	527
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	2 cut(s)	171, 230
TaqI	TCGA	1 cut(s)	133
TasI	AATT	2 cut(s)	37, 350
TauI	GCSGC	1 cut(s)	195
TfiI	GAWTC	2 cut(s)	63, 399
Tru1I	TTAA	2 cut(s)	81, 443
Tru9I	TTAA	2 cut(s)	81, 443
TscAI	CASTG	3 cut(s)	34, 121, 247
TseFI	GTSAC	3 cut(s)	116, 200, 427
TseI	GCWGC	5 cut(s)	69, 72, 75, 275, 389
Tsp45I	GTSAC	3 cut(s)	116, 200, 427
TspDTI	ATGAA	2 cut(s)	99, 173
TspGWI	ACGGA	1 cut(s)	280
TspRI	CASTG	3 cut(s)	34, 121, 247
VspI	ATTAAT	1 cut(s)	81
XhoI	CTCGAG	1 cut(s)	132
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.