Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007347

Physical Location & Seq

Genomic Coordinates Reverse (-)

7977913 .. 7980869

Gene Structure 2957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG099400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGTGGTGAGGGGAGCACCGGCCATTGCTATAGCCGCGGCGCTGTCTTTGGCTGTGGAAGTGTTTAATTTGGAGGATTTTAATGGAACTCCGGACGAAGCTTGTTCTTTCCTTATAATGAAACTTGAGTATTTAGTATCCAGCCGGCCGACCGCTGTTAACCTTTCGGATGCTGCAACTAAATTGAAACAGATTGCAGCCAAGGTTGCCGCGACTTGTTCAGATTCCAAGAGTGTGTTTGAGGCATATATTGAAGCTTCTGAAAGCATGCTCAAGGATGATGTTGATTCAAACAAAGCTATTGGGTCTCATGGAGCGGCTTTTATCCAGCACCACCTTGAAAATTCTACGAGGATTTCTATGTTGACCCACTGCAACACTGGCAGCCTTGCAACTGCTGGTTATGGTACTGCTCTTGGTGTAATACGTTCACTTCATACGGAAGGAGTTTTAGAAAGGGCCTATTGCACAGAGACACGCCCATTCAACCAAGGATCAAGACTCACAGCATTTGAGTTAGTGCATGATAACATACCTGCCACTCTTATAGCAGATTCGGCTGCAGCAGCATTAATGAAGGATGGAAAGGTGAATGCCGTTGTTGTTGGAGCAGACCGTGTGGCTGCGAATGGTGACACCGCTAACAAGATAGGTACCTACAGTCTTGCCGTCAGTGCAAAGTACCACAACATACCATTCTTTGTGGCTGCACCGCTGACTTCCGTTGACTTATCTCTTTCTTCTGGAGAAGCGATAGTAATAGAGGAAAGATCCCCAAAGGAATTGTTGAACACGCATGGAGGACTCGGGGAACAAGTTGCCGCATCTGGAATCTCTGTCTGGAACCCAGCCTTTGATGTCACTCCTGCTAGCTTAATATCTGGCATCATAACAGAAAAGGGTGTCATCACGAAAAAGGGTACAGATGCTTTTGACATAAAGGATTTTGTTCAAAAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000302 GO:0003674 GO:0003824 GO:0005575 GO:0005911 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009506 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017144 GO:0019509 GO:0019752 GO:0030054 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0046523 GO:0050896 GO:0051716 GO:0055044 GO:0070887 GO:0071241 GO:0071248 GO:0071265 GO:0071267 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0097366 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

IF-2B

Protein Analysis

320

Amino Acids

33.54

Weight (kDa)

5.38

Isoelectric Point (pI)

28.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	3 - 304	5.8e-77	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05830 AT2G05830 AT2G05830 AT2G05830
fragaria_vesca	FvH4_1g08940
malus_domestica	MD02G1094700.v1.1 MD15G1219600.v1.1
prunus_persica	Prupe.7G196300_v2.0.a1 Prupe.7G196300_v2.0.a1
pyrus_communis	pycom02g07490 pycom15g19470
rosa_chinensis	RchiOBHm_Chr2g0095391
rosa_laevigata	RLG00000016561
rosa_multiflora	Rmu_ssc0000183.1_g000040 Rmu_ssc0000183.1_g000041 Rmu_ssc0000183.1_g000042
rosa_roxburghii	Rroxscaffold_2G00146410
rosa_rugosa	Rorug02G0050400
rosa_samantha	Rh2AG098600 Rh2BG099800 Rh2CG101800 Rh2CG105700 Rh2DG099400
rosa_wichuraiana	Rw2G007440 Rw2G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	116
Acc36I	ACCTGC	1 cut(s)	544
Acc65I	GGTACC	1 cut(s)	653
AccB1I	GGYRCC	1 cut(s)	653
AccBSI	CCGCTC	1 cut(s)	317
AccII	CGCG	2 cut(s)	38, 212
AccIII	TCCGGA	1 cut(s)	91
AciI	CCGC	8 cut(s)	36, 38, 153, 210, 317, 639, 713, 822
AclWI	GGATC	2 cut(s)	502, 765
AcoI	YGGCCR	2 cut(s)	21, 146
AcsI	RAATTY	1 cut(s)	343
AfaI	GTAC	4 cut(s)	409, 655, 683, 922
AgsI	TTSAA	7 cut(s)	187, 254, 291, 341, 487, 790, 953
AluBI	AGCT	4 cut(s)	101, 257, 299, 873
AluI	AGCT	4 cut(s)	101, 257, 299, 873
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	2 cut(s)	312, 467
AlwI	GGATC	2 cut(s)	502, 765
Ama87I	CYCGRG	1 cut(s)	806
Aor13HI	TCCGGA	1 cut(s)	91
AoxI	GGCC	4 cut(s)	21, 146, 459, 957
ApeKI	GCWGC	8 cut(s)	173, 197, 384, 560, 563, 566, 623, 707
ApoI	RAATTY	1 cut(s)	343
AseI	ATTAAT	1 cut(s)	572
Asp718I	GGTACC	1 cut(s)	653
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	1 cut(s)	459
AsuHPI	GGTGA	3 cut(s)	19, 601, 644
AsuNHI	GCTAGC	1 cut(s)	869
AvaI	CYCGRG	1 cut(s)	806
BanI	GGYRCC	1 cut(s)	653
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	8 cut(s)	160, 209, 396, 547, 575, 578, 610, 694
BccI	CCATC	1 cut(s)	575
BceAI	ACGGC	2 cut(s)	581, 653
BciVI	GTATCC	1 cut(s)	148
BcoDI	GTCTC	2 cut(s)	312, 467
BfaI	CTAG	1 cut(s)	870
BfmI	CTRYAG	3 cut(s)	30, 561, 658
BfoI	RGCGCY	1 cut(s)	44
BfuAI	ACCTGC	1 cut(s)	544
BfuI	GTATCC	1 cut(s)	148
BmeT110I	CYCGRG	1 cut(s)	806
BmgT120I	GGNCC	1 cut(s)	459
BmiI	GGNNCC	2 cut(s)	655, 845
BmsI	GCATC	4 cut(s)	160, 833, 894, 916
BmtI	GCTAGC	1 cut(s)	873
BpmI	CTGGAG	1 cut(s)	765
BpuEI	CTTGAG	2 cut(s)	146, 257
BsaI	GGTCTC	1 cut(s)	312
BsaJI	CCNNGG	3 cut(s)	36, 201, 490
BsaWI	WCCGGW	1 cut(s)	91
Bse118I	RCCGGY	2 cut(s)	19, 144
Bse1I	ACTGG	1 cut(s)	385
Bse3DI	GCAATG	1 cut(s)	24
BseAI	TCCGGA	1 cut(s)	91
BseDI	CCNNGG	3 cut(s)	36, 201, 490
BseGI	GGATG	3 cut(s)	175, 283, 586
BseMI	GCAATG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	385
BseX3I	CGGCCG	1 cut(s)	146
BseXI	GCAGC	8 cut(s)	160, 209, 396, 547, 575, 578, 610, 694
BseYI	CCCAGC	1 cut(s)	847
BsgI	GTGCAG	1 cut(s)	693
Bsh1236I	CGCG	2 cut(s)	38, 212
Bsh1285I	CGRYCG	2 cut(s)	149, 153
BshFI	GGCC	4 cut(s)	23, 148, 461, 959
BshNI	GGYRCC	1 cut(s)	653
BsiEI	CGRYCG	2 cut(s)	149, 153
BsiHKAI	GWGCWC	1 cut(s)	19
BsiHKCI	CYCGRG	1 cut(s)	806
BsiSI	CCGG	3 cut(s)	20, 92, 145
BsmAI	GTCTC	2 cut(s)	312, 467
BsmI	GAATGC	1 cut(s)	598
BsnI	GGCC	4 cut(s)	23, 148, 461, 959
Bso31I	GGTCTC	1 cut(s)	312
BsoBI	CYCGRG	1 cut(s)	806
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp13I	TCCGGA	1 cut(s)	91
Bsp143I	GATC	2 cut(s)	494, 770
BspACI	CCGC	8 cut(s)	36, 38, 153, 210, 317, 639, 713, 822
BspANI	GGCC	4 cut(s)	23, 148, 461, 959
BspEI	TCCGGA	1 cut(s)	91
BspFNI	CGCG	2 cut(s)	38, 212
BspLI	GGNNCC	2 cut(s)	655, 845
BspMAI	CTGCAG	1 cut(s)	565
BspMI	ACCTGC	1 cut(s)	544
BspOI	GCTAGC	1 cut(s)	873
BspPI	GGATC	2 cut(s)	502, 765
BspT107I	GGYRCC	1 cut(s)	653
BspTNI	GGTCTC	1 cut(s)	312
BsrBI	CCGCTC	1 cut(s)	317
BsrDI	GCAATG	1 cut(s)	24
BsrFI	RCCGGY	2 cut(s)	19, 144
BsrI	ACTGG	1 cut(s)	385
BssAI	RCCGGY	2 cut(s)	19, 144
BssECI	CCNNGG	3 cut(s)	36, 201, 490
BssMI	GATC	2 cut(s)	494, 770
BssT1I	CCWWGG	2 cut(s)	201, 490
Bst4CI	ACNGT	2 cut(s)	617, 662
BstC8I	GCNNGC	3 cut(s)	146, 269, 871
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	3 cut(s)	175, 283, 586
BstFNI	CGCG	2 cut(s)	38, 212
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	2 cut(s)	497, 773
BstMAI	GTCTC	2 cut(s)	312, 467
BstMBI	GATC	2 cut(s)	494, 770
BstMCI	CGRYCG	2 cut(s)	149, 153
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 206, 381, 557, 566, 674
BstNSI	RCATGY	1 cut(s)	271
BstSFI	CTRYAG	3 cut(s)	30, 561, 658
BstUI	CGCG	2 cut(s)	38, 212
BstV1I	GCAGC	8 cut(s)	160, 209, 396, 547, 575, 578, 610, 694
BstX2I	RGATCY	1 cut(s)	770
BstYI	RGATCY	1 cut(s)	770
BstZI	CGGCCG	1 cut(s)	146
BsuI	GTATCC	1 cut(s)	148
BsuRI	GGCC	4 cut(s)	23, 148, 461, 959
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	3 cut(s)	175, 283, 586
BtsI	GCAGTG	1 cut(s)	370
BtsIMutI	CAGTG	3 cut(s)	370, 378, 679
BveI	ACCTGC	1 cut(s)	544
Cac8I	GCNNGC	3 cut(s)	146, 269, 871
CfoI	GCGC	1 cut(s)	43
Cfr10I	RCCGGY	2 cut(s)	19, 144
Cfr13I	GGNCC	1 cut(s)	459
Cfr42I	CCGCGG	1 cut(s)	39
Csp6I	GTAC	4 cut(s)	408, 654, 682, 921
CviAII	CATG	4 cut(s)	268, 311, 524, 797
CviQI	GTAC	4 cut(s)	408, 654, 682, 921
DpnI	GATC	2 cut(s)	496, 772
DpnII	GATC	2 cut(s)	494, 770
EaeI	YGGCCR	2 cut(s)	21, 146
EagI	CGGCCG	1 cut(s)	146
EclXI	CGGCCG	1 cut(s)	146
Eco130I	CCWWGG	2 cut(s)	201, 490
Eco147I	AGGCCT	1 cut(s)	959
Eco31I	GGTCTC	1 cut(s)	312
Eco52I	CGGCCG	1 cut(s)	146
Eco88I	CYCGRG	1 cut(s)	806
EcoO109I	RGGNCCY	1 cut(s)	459
EcoT14I	CCWWGG	2 cut(s)	201, 490
ErhI	CCWWGG	2 cut(s)	201, 490
FaeI	CATG	4 cut(s)	271, 314, 527, 800
FatI	CATG	4 cut(s)	267, 310, 523, 796
FokI	GGATG	3 cut(s)	182, 290, 593
FspBI	CTAG	1 cut(s)	870
GlaI	GCGC	1 cut(s)	42
GsaI	CCCAGC	1 cut(s)	851
GsuI	CTGGAG	1 cut(s)	765
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	4 cut(s)	23, 148, 461, 959
HapII	CCGG	3 cut(s)	20, 92, 145
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	4 cut(s)	271, 314, 527, 800
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HincII	GTYRAC	3 cut(s)	160, 366, 727
HindII	GTYRAC	3 cut(s)	160, 366, 727
HindIII	AAGCTT	2 cut(s)	99, 255
HinfI	GANTC	6 cut(s)	224, 287, 501, 554, 804, 831
HpaI	GTTAAC	1 cut(s)	160
HpaII	CCGG	3 cut(s)	20, 92, 145
HphI	GGTGA	3 cut(s)	19, 601, 644
Hpy166II	GTNNAC	4 cut(s)	160, 366, 431, 727
Hpy188I	TCNGA	3 cut(s)	169, 223, 262
Hpy188III	TCNNGA	6 cut(s)	92, 498, 744, 828, 841, 910
Hpy8I	GTNNAC	4 cut(s)	160, 366, 431, 727
HpyAV	CCTTC	2 cut(s)	437, 571
HpyCH4III	ACNGT	2 cut(s)	617, 662
HpyCH4IV	ACGT	1 cut(s)	427
HpyCH4V	TGCA	9 cut(s)	176, 197, 375, 392, 468, 523, 563, 677, 710
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 206, 381, 557, 566, 674
HpySE526I	ACGT	1 cut(s)	427
Hsp92II	CATG	4 cut(s)	271, 314, 527, 800
HspAI	GCGC	1 cut(s)	41
Kpn2I	TCCGGA	1 cut(s)	91
KpnI	GGTACC	1 cut(s)	657
KroI	GCCGGC	1 cut(s)	144
KroNI	GCCGGC	1 cut(s)	146
KspAI	GTTAAC	1 cut(s)	160
KspI	CCGCGG	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	494, 770
LmnI	GCTCC	3 cut(s)	14, 314, 608
Lsp1109I	GCAGC	8 cut(s)	160, 209, 396, 547, 575, 578, 610, 694
LweI	GCATC	4 cut(s)	160, 833, 894, 916
MaeI	CTAG	1 cut(s)	870
MaeII	ACGT	1 cut(s)	427
MaeIII	GTNAC	2 cut(s)	632, 859
MalI	GATC	2 cut(s)	496, 772
MbiI	CCGCTC	1 cut(s)	317
MboI	GATC	2 cut(s)	494, 770
MboII	GAAGA	1 cut(s)	732
MflI	RGATCY	1 cut(s)	770
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	4 cut(s)	67, 182, 343, 782
MlyI	GAGTC	2 cut(s)	495, 798
MmeI	TCCRAC	1 cut(s)	586
MnlI	CCTC	6 cut(s)	3, 67, 235, 345, 757, 794
MroI	TCCGGA	1 cut(s)	91
MroNI	GCCGGC	1 cut(s)	144
MseI	TTAA	5 cut(s)	66, 81, 159, 572, 875
MspA1I	CMGCKG	3 cut(s)	38, 155, 715
MspI	CCGG	3 cut(s)	20, 92, 145
Mva1269I	GAATGC	1 cut(s)	598
MvnI	CGCG	2 cut(s)	38, 212
MwoI	GCNNNNNNNGC	6 cut(s)	35, 206, 381, 557, 566, 674
NaeI	GCCGGC	1 cut(s)	146
NdeII	GATC	2 cut(s)	494, 770
NgoMIV	GCCGGC	1 cut(s)	144
NheI	GCTAGC	1 cut(s)	869
NlaIII	CATG	4 cut(s)	271, 314, 527, 800
NlaIV	GGNNCC	2 cut(s)	655, 845
NmuCI	GTSAC	2 cut(s)	632, 859
NspI	RCATGY	1 cut(s)	271
PaeI	GCATGC	1 cut(s)	271
PceI	AGGCCT	1 cut(s)	959
PctI	GAATGC	1 cut(s)	598
PdiI	GCCGGC	1 cut(s)	146
PfeI	GAWTC	4 cut(s)	224, 287, 554, 831
PleI	GAGTC	2 cut(s)	495, 798
PpsI	GAGTC	2 cut(s)	495, 798
PshBI	ATTAAT	1 cut(s)	572
PsiI	TTATAA	1 cut(s)	116
PspFI	CCCAGC	1 cut(s)	847
PspN4I	GGNNCC	2 cut(s)	655, 845
PspPI	GGNCC	1 cut(s)	459
PstI	CTGCAG	1 cut(s)	565
PsuI	RGATCY	1 cut(s)	770
RsaI	GTAC	4 cut(s)	409, 655, 683, 922
RsaNI	GTAC	4 cut(s)	408, 654, 682, 921
SacII	CCGCGG	1 cut(s)	39
SaqAI	TTAA	5 cut(s)	66, 81, 159, 572, 875
Sau3AI	GATC	2 cut(s)	494, 770
Sau96I	GGNCC	1 cut(s)	459
SchI	GAGTC	2 cut(s)	495, 798
SduI	GDGCHC	1 cut(s)	19
SfaNI	GCATC	4 cut(s)	160, 833, 894, 916
SfcI	CTRYAG	3 cut(s)	30, 561, 658
Sfr303I	CCGCGG	1 cut(s)	39
SgrBI	CCGCGG	1 cut(s)	39
SmlI	CTYRAG	2 cut(s)	125, 272
SmoI	CTYRAG	2 cut(s)	125, 272
SphI	GCATGC	1 cut(s)	271
Sse9I	AATT	4 cut(s)	67, 182, 343, 782
SseBI	AGGCCT	1 cut(s)	959
SsiI	CCGC	8 cut(s)	36, 38, 153, 210, 317, 639, 713, 822
SspMI	CTAG	1 cut(s)	870
StuI	AGGCCT	1 cut(s)	959
StyI	CCWWGG	2 cut(s)	201, 490
TaaI	ACNGT	2 cut(s)	617, 662
TaiI	ACGT	1 cut(s)	430
TasI	AATT	4 cut(s)	67, 182, 343, 782
TauI	GCSGC	5 cut(s)	38, 41, 212, 320, 824
TfiI	GAWTC	4 cut(s)	224, 287, 554, 831
Tru1I	TTAA	5 cut(s)	66, 81, 159, 572, 875
Tru9I	TTAA	5 cut(s)	66, 81, 159, 572, 875
TscAI	CASTG	3 cut(s)	377, 385, 679
TseFI	GTSAC	2 cut(s)	632, 859
TseI	GCWGC	8 cut(s)	173, 197, 384, 560, 563, 566, 623, 707
Tsp45I	GTSAC	2 cut(s)	632, 859
TspDTI	ATGAA	3 cut(s)	134, 425, 590
TspGWI	ACGGA	2 cut(s)	455, 712
TspRI	CASTG	3 cut(s)	377, 385, 679
VspI	ATTAAT	1 cut(s)	572
XapI	RAATTY	1 cut(s)	343
XceI	RCATGY	1 cut(s)	271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	377
XspI	CTAG	1 cut(s)	870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.