Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010169

Physical Location & Seq

Genomic Coordinates Forward (+)

2256970 .. 2257908

Gene Structure 939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G05900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGGTCTAGTGGGGCTCCATTCAGGCACCATTGACATGGAGTTTATAGGAGTTGAAGATCACGGGGACGAGGAGGGTAAACAGATTGCAGTTAGTGTCATCTCTTCAGGGAAAAATGCTGACAAAACCGAAGATCCCGATTCATTAATATTTACCGGGTTTGGTGGTACGGACATGTATCATGGACAACCATGTAATCAGAAACTTGAGAGGTTGAATATTCCACTAGAAGCCGCTTTTCGGAAGAAAAGTATTGTGAGAGTGGTTAGATGTATGAAGGATGAAAAAAGGACAAATGGTAATATTTACATATATGATGGAACATATATGATTACTAATAGGTGGGAAGAGGAAGGTCAAAATGGGTTCATAGTGTTTAAATTCAAATTGGTGAGAGAGCCTGATCAAAAACCCGCTTTCGGTATTTGGAAATCGATACAGAATTGGAGGAATGGTTTGAGTATAAGACCAGGTCTTATCCTTGAAGATCTCTCTAATGGAGCTGAGAATCTAAAGGTTTGTTTGGTGAATGAAGTTGACAAGGAGAATGGTCCTGCCTTGTTTAGGTATGTCACTTCACTTATACATGAAGTAATCAATAATATTCCATCGATGGTTGATCGTTGCGCTTGTGGACGTAGATCATGTGGTTCAAAACATGTATTCAGAGAAAAGCTTAGTGTGTCATCGTCATTGGTGATTAGTGCAAAGAAGTCAGGTAATGTGGCTCGATTTATGAACCATAGTTGCTCACCCAACGTGTTTTGGCAGTCTATTGCTCGTGAACAAAATGGTTTATGGTGTCTTTACATTGGCTTTTTTGCAATGAAACATATTCCTCCATTAACGGAGTTGAGATATGATTATGGAAAATCTAGAGGTGGTGGGAAGAAGATGTGTCTATGTAGAACGAAGAAATGTTGTGGTTCATTTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000775 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008361 GO:0009987 GO:0010468 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019222 GO:0019538 GO:0032259 GO:0032501 GO:0032502 GO:0032535 GO:0036211 GO:0040029 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0051276 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0098687 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00260 ko00310 ko01100 ko04146 ko04211 map00260 map00310 map01100 map04146 map04211

Pfam Domains

Protein Families

AT_hook Pre-SET SAD_SRA SET

Protein Analysis

312

Amino Acids

35.02

Weight (kDa)

8.93

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAD_SRA	PF02182	22 - 136	1.1e-26	SAD/SRA domain
SET	PF00856	190 - 290	8.5e-12	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05900
fragaria_vesca	FvH4_7g07980
malus_domestica	MD00G1068300.v1.1 MD12G1112200.v1.1 MD14G1101300.v1.1
prunus_persica	Prupe.7G021100_v2.0.a1 Prupe.7G021100_v2.0.a1
pyrus_communis	pycom12g09140 pycom14g08780
rosa_chinensis	RchiOBHm_Chr3g0494321 RchiOBHm_Chr3g0494471
rosa_laevigata	RLG00000022673
rosa_multiflora	Rmu_sc0000152.1_g000010
rosa_roxburghii	Rroxscaffold_6G00391110
rosa_rugosa	Rorug03G0265400
rosa_samantha	Rh3AG314800 Rh3AG315600 Rh3BG350800 Rh3CG347500 Rh3DG350100
rosa_wichuraiana	Rw3G027550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	26
AciI	CCGC	2 cut(s)	234, 414
AclWI	GGATC	1 cut(s)	128
AcsI	RAATTY	1 cut(s)	380
AcuI	CTGAAG	1 cut(s)	90
AfaI	GTAC	1 cut(s)	169
AfiI	CCNNNNNNNGG	3 cut(s)	240, 419, 564
AflIII	ACRYGT	3 cut(s)	174, 658, 759
AgsI	TTSAA	5 cut(s)	56, 217, 385, 485, 654
AjnI	CCWGG	1 cut(s)	469
AluBI	AGCT	2 cut(s)	503, 676
AluI	AGCT	2 cut(s)	503, 676
AlwI	GGATC	1 cut(s)	128
ApoI	RAATTY	1 cut(s)	380
AseI	ATTAAT	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	629
AspS9I	GGNCC	1 cut(s)	551
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	4 cut(s)	403, 538, 709, 744
AvaII	GGWCC	1 cut(s)	551
BanI	GGYRCC	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	18
BauI	CACGAG	1 cut(s)	780
BccI	CCATC	3 cut(s)	311, 607, 616
BciT130I	CCWGG	1 cut(s)	471
BclI	TGATCA	1 cut(s)	403
BcnI	CCSGG	1 cut(s)	157
BfaI	CTAG	3 cut(s)	8, 227, 876
BglII	AGATCT	1 cut(s)	487
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	2 cut(s)	157, 471
Bme18I	GGWCC	1 cut(s)	551
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	2 cut(s)	17, 28
BmrFI	CCNGG	2 cut(s)	157, 471
BpuEI	CTTGAG	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	157
Bsa29I	ATCGAT	2 cut(s)	434, 611
BsaXI	ACNNNNNCTCC	2 cut(s)	439, 469
Bsc4I	CCNNNNNNNGG	3 cut(s)	240, 419, 564
Bse3DI	GCAATG	1 cut(s)	831
BseBI	CCWGG	1 cut(s)	471
BseCI	ATCGAT	2 cut(s)	434, 611
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	3 cut(s)	240, 419, 564
BseMI	GCAATG	1 cut(s)	831
BseMII	CTCAG	1 cut(s)	495
BseRI	GAGGAG	1 cut(s)	86
BshNI	GGYRCC	1 cut(s)	26
BshVI	ATCGAT	2 cut(s)	434, 611
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	3 cut(s)	240, 419, 564
BsmFI	GGGAC	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	6 cut(s)	58, 133, 403, 487, 619, 641
BspACI	CCGC	2 cut(s)	234, 414
BspCNI	CTCAG	1 cut(s)	496
BspDI	ATCGAT	2 cut(s)	434, 611
BspLI	GGNNCC	2 cut(s)	17, 28
BspPI	GGATC	1 cut(s)	128
BspT107I	GGYRCC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	831
BssMI	GATC	6 cut(s)	58, 133, 403, 487, 619, 641
BssSI	CACGAG	1 cut(s)	780
Bst2BI	CACGAG	1 cut(s)	780
Bst2UI	CCWGG	1 cut(s)	471
Bst6I	CTCTTC	2 cut(s)	109, 342
BstDEI	CTNAG	2 cut(s)	504, 677
BstENI	CCTNNNNNAGG	1 cut(s)	562
BstF5I	GGATG	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	629
BstKTI	GATC	6 cut(s)	61, 136, 406, 490, 622, 644
BstMBI	GATC	6 cut(s)	58, 133, 403, 487, 619, 641
BstNI	CCWGG	1 cut(s)	471
BstNSI	RCATGY	2 cut(s)	178, 662
BstSCI	CCNGG	2 cut(s)	155, 469
BstX2I	RGATCY	2 cut(s)	133, 487
BstXI	CCANNNNNNTGG	1 cut(s)	37
BstYI	RGATCY	2 cut(s)	133, 487
Bsu15I	ATCGAT	2 cut(s)	434, 611
BsuTUI	ATCGAT	2 cut(s)	434, 611
BtsCI	GGATG	1 cut(s)	286
CfoI	GCGC	1 cut(s)	629
Cfr13I	GGNCC	1 cut(s)	551
ClaI	ATCGAT	2 cut(s)	434, 611
CsiI	ACCWGGT	1 cut(s)	469
Csp6I	GTAC	1 cut(s)	168
CviAII	CATG	7 cut(s)	37, 175, 182, 192, 587, 645, 659
CviJI	RGCY	7 cut(s)	16, 233, 400, 503, 676, 728, 816
CviKI_1	RGCY	7 cut(s)	16, 233, 400, 503, 676, 728, 816
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	2 cut(s)	504, 677
DpnI	GATC	6 cut(s)	60, 135, 405, 489, 621, 643
DpnII	GATC	6 cut(s)	58, 133, 403, 487, 619, 641
DraI	TTTAAA	1 cut(s)	379
Eam1104I	CTCTTC	2 cut(s)	109, 342
EarI	CTCTTC	2 cut(s)	109, 342
Eco24I	GRGCYC	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	551
Eco57I	CTGAAG	1 cut(s)	90
EcoNI	CCTNNNNNAGG	1 cut(s)	562
EcoRII	CCWGG	1 cut(s)	469
EcoT38I	GRGCYC	1 cut(s)	18
FaeI	CATG	7 cut(s)	40, 178, 185, 195, 590, 648, 662
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	7 cut(s)	36, 174, 181, 191, 586, 644, 658
FauI	CCCGC	1 cut(s)	421
FbaI	TGATCA	1 cut(s)	403
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	1 cut(s)	293
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	3 cut(s)	8, 227, 876
GlaI	GCGC	1 cut(s)	628
GluI	GCNGC	1 cut(s)	234
HapII	CCGG	1 cut(s)	156
HhaI	GCGC	1 cut(s)	629
Hin1II	CATG	7 cut(s)	40, 178, 185, 195, 590, 648, 662
Hin6I	GCGC	1 cut(s)	627
HinP1I	GCGC	1 cut(s)	627
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HindIII	AAGCTT	1 cut(s)	674
HinfI	GANTC	2 cut(s)	140, 508
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	4 cut(s)	403, 538, 709, 744
Hpy166II	GTNNAC	4 cut(s)	80, 538, 635, 785
Hpy188I	TCNGA	3 cut(s)	201, 243, 668
Hpy188III	TCNNGA	3 cut(s)	137, 782, 876
Hpy8I	GTNNAC	4 cut(s)	80, 538, 635, 785
HpyAV	CCTTC	2 cut(s)	271, 347
HpyCH4IV	ACGT	2 cut(s)	637, 759
HpyCH4V	TGCA	3 cut(s)	89, 707, 824
HpyF3I	CTNAG	2 cut(s)	504, 677
HpySE526I	ACGT	2 cut(s)	637, 759
Hsp92II	CATG	7 cut(s)	40, 178, 185, 195, 590, 648, 662
HspAI	GCGC	1 cut(s)	627
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	6 cut(s)	58, 133, 403, 487, 619, 641
LmnI	GCTCC	2 cut(s)	21, 500
LpnPI	CCDG	8 cut(s)	9, 93, 169, 414, 456, 483, 567, 702
MabI	ACCWGGT	1 cut(s)	469
MaeI	CTAG	3 cut(s)	8, 227, 876
MaeII	ACGT	2 cut(s)	637, 759
MaeIII	GTNAC	1 cut(s)	571
MalI	GATC	6 cut(s)	60, 135, 405, 489, 621, 643
MboI	GATC	6 cut(s)	58, 133, 403, 487, 619, 641
MboII	GAAGA	9 cut(s)	68, 96, 143, 256, 359, 497, 901, 904, 925
MflI	RGATCY	2 cut(s)	133, 487
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	3 cut(s)	380, 386, 442
MnlI	CCTC	7 cut(s)	64, 67, 204, 343, 441, 849, 872
MseI	TTAA	3 cut(s)	146, 378, 845
MslI	CAYNNNNRTG	1 cut(s)	35
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	2 cut(s)	157, 471
MvaI	CCWGG	1 cut(s)	471
NciI	CCSGG	1 cut(s)	157
NdeII	GATC	6 cut(s)	58, 133, 403, 487, 619, 641
NlaIII	CATG	7 cut(s)	40, 178, 185, 195, 590, 648, 662
NlaIV	GGNNCC	2 cut(s)	17, 28
NmuCI	GTSAC	1 cut(s)	571
NspI	RCATGY	2 cut(s)	178, 662
PciI	ACATGT	2 cut(s)	174, 658
PfeI	GAWTC	2 cut(s)	140, 508
PflFI	GACNNNGTC	1 cut(s)	471
PkrI	GCNGC	1 cut(s)	235
PscI	ACATGT	2 cut(s)	174, 658
PshBI	ATTAAT	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	2 cut(s)	17, 28
PspPI	GGNCC	1 cut(s)	551
PsuI	RGATCY	2 cut(s)	133, 487
PsyI	GACNNNGTC	1 cut(s)	471
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	3 cut(s)	146, 378, 845
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	6 cut(s)	58, 133, 403, 487, 619, 641
Sau96I	GGNCC	1 cut(s)	551
ScrFI	CCNGG	2 cut(s)	157, 471
SduI	GDGCHC	1 cut(s)	18
SexAI	ACCWGGT	1 cut(s)	469
SinI	GGWCC	1 cut(s)	551
SmiMI	CAYNNNNRTG	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	3 cut(s)	380, 386, 442
SsiI	CCGC	2 cut(s)	234, 414
SspI	AATATT	4 cut(s)	150, 220, 304, 604
SspMI	CTAG	3 cut(s)	8, 227, 876
StyD4I	CCNGG	2 cut(s)	155, 469
TaiI	ACGT	2 cut(s)	640, 762
TaqI	TCGA	3 cut(s)	434, 611, 730
TasI	AATT	3 cut(s)	380, 386, 442
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	2 cut(s)	140, 508
Tru1I	TTAA	3 cut(s)	146, 378, 845
Tru9I	TTAA	3 cut(s)	146, 378, 845
TseFI	GTSAC	1 cut(s)	571
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	9 cut(s)	132, 290, 297, 358, 546, 603, 752, 842, 918
TspGWI	ACGGA	2 cut(s)	185, 863
Tth111I	GACNNNGTC	1 cut(s)	471
VpaK11BI	GGWCC	1 cut(s)	551
VspI	ATTAAT	1 cut(s)	146
XagI	CCTNNNNNAGG	1 cut(s)	562
XapI	RAATTY	1 cut(s)	380
XbaI	TCTAGA	1 cut(s)	875
XceI	RCATGY	2 cut(s)	178, 662
XspI	CTAG	3 cut(s)	8, 227, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.