Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0010169

Physical Location & Seq

Genomic Coordinates Reverse (-)

39328479 .. 39330675

Gene Structure 2197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G027550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2145 bp

ATGGAACACAGTTTTGGTCAAGACTCTGTTCCTGGGTTTGGGTCATTTGATAAGTCTAGGGTTTTGGATGTAAGGCCTTTGAGGCGTCTTGTTCCTGTATTCCCCTCAGCTTCTTCCTTTTCGACACCCCAAGGTGCTGCTCCTTTTGTTTGTGCTTCCCCTGCTGGTCCTTTCCCACCTGGGGTTTCCCCATTTTTCCCCTTTTTCATTTCATCAGAGTCTCAAAGGCCGCTCGAACAAACACCAACTGCTATACCCAATGAGAATCAACCGTTTGGCTTCACTAATCCAATATCTAATGCAGTTCCAATAAATTCCTTCAGGAATCCTCCTCCACCCTCAACAGCTGGGGTAACCCCCAACCAGACTACAGCAACTTCGAATGGAGGAGATACTACACCTTCGAGAAGGATTACTAGAAGTCGTGTCCAACCACAACCGCAACCGCAACGTTGGCTTGCGGAGGAAGATGGTTTAAGCGAGAGTGTTGTTCATGCAGAAAATAAAAGGAGGGTCGGGAGGCCCAAGGGTAAATTCCAGTCTCAAAAGAGGACACGGGGTGGCCAGGACATTAATGTTGCCTTGCCTGATGTCGACATTGATGCAATAGTTGATAATGTTCTCACCTCATATACCAATACCTTGAGACAAACTGATGCCAACAGGGAATCAGTTGGATATGTACTCATGTGTTATGATTTGCTACGAAGAAAGATTTCACAAATTGAAGAGATGAAGGAAGGGATACCAGGTGGAATTAGGACAAATGCCCAAAAGAGGATTGGTACAGTGCCCGGTGTTGAAGTTGGGGATATTTTCTTTTTTCGAATGGAATTGTGCTTGGTTGGATTACACGCTCCAACTATGGGTGGGATTGATTATATGGGAGTCAAGAACAGTTCAGAGGAAGAGCCCTTAGCATTGAGCATTGTTTCTTCTGGAGGTTATGAGGATCATATACAGGATGGGAATGAGTTGATATATAGTGGCCAAGGTGGCAATGCCGGCAACGATAACAGGAAAGATAAGGAAACAAAGGATCAGAAGCTTGAAAGGGGTAATCTAGCTTTGGAGAAAAGTTTGCATCGGGGTAATGATGTAAGAGTAATTCGGGGTGTTAAGGATGTTTCTAATCCAACTGGGAAGGTATATGTCTATGACGGTCTATACAAAATCCATGAATCATGGGTAGATAAAGGAAAGAGTGGTGCCAATGTATTCAAGTACAGATTGGTAAGATTACCTGGACAGCCTGAAGCGTTTACAGTATGGAAATCAATTGAGCAATGGAAAGAAACAAATACTACAAGGGTTGGATTGATATTGCCCGATCTTACTTCAGGGGCAGAAACTTTTCCCGTTTCTCTTGTAAATGATGTAGATGGCGAGAAAGGCCCTGCACACTTCACATATATTCCTAGTCTTAAGTATTCAAAACCTGTTAATCTTACAGAACCTACTGCTGGGTGTAATTGTACCGGTGGATGTCTCCCTGGTAATTCCAACTGCCCTTGCATTCAGAAAAATGGAGGTTATCTCCCATATACTGCAAATGGGCTTCTTGTGAACCAAAAATCCTTATTACATGAATGTGGTCCTTCCTGCAAATGCCCTCCTAATTGTCGTAATCGTGTGTCCCAAGGTGGCTTGAAAATTCGTTTGGAAGTGTTTAAGACTAAGGATAAAGGTTGGGGTTTGAGGTCCTGGGATCCCATCCGTGCTGGTGCTTTCTTATGCGAGTATGCAGGGGAAGCTCTAAATGTTTCTGGTATAGAAAAGCTTGGGGATGACCGTGCAGATGATTACAGTTTTGATGCTAATCGTACTTGTCAGACACTGGGAGTTCTGCCTGGTGATTCTAATGAGACTCCAAATGTTCCTTTTCCTCTACTTATAAGTGCAAATACTGCCGGAAATGTTGCTCGCTTTATGAATCACAGCTGTTCTCCAAATGTGTTCTGGCAACCAATTTTACGTGAAAATAAAAATGAATCTGATTTACATGTTGCGTTTTATGCGGTTGGACACATTCCTCCTATGACAGAGTTGACTTATGATTATGGGATGATCCCTTATGAGAAAGGATATCAGAGGAAGAAAATATGCCTTTGTCGGTCAATAAAGTGTAGAAGCTTCTTTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00260 ko00310 ko01100 ko04146 ko04211 map00260 map00310 map01100 map04146 map04211

Pfam Domains

Protein Families

AT_hook Pre-SET SAD_SRA SET

Protein Analysis

714

Amino Acids

78.49

Weight (kDa)

8.4

Isoelectric Point (pI)

46.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAD_SRA	PF02182	260 - 417	1.1e-55	SAD/SRA domain
Pre-SET	PF05033	447 - 544	1.4e-23	Pre-SET motif
SET	PF00856	563 - 688	1.8e-17	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05900
fragaria_vesca	FvH4_7g07980
malus_domestica	MD00G1068300.v1.1 MD12G1112200.v1.1 MD14G1101300.v1.1
prunus_persica	Prupe.7G021100_v2.0.a1 Prupe.7G021100_v2.0.a1
pyrus_communis	pycom12g09140 pycom14g08780
rosa_chinensis	RchiOBHm_Chr3g0494321 RchiOBHm_Chr3g0494471
rosa_laevigata	RLG00000022673
rosa_multiflora	Rmu_sc0000152.1_g000010
rosa_roxburghii	Rroxscaffold_6G00391110
rosa_rugosa	Rorug03G0265400
rosa_samantha	Rh3AG314800 Rh3AG315600 Rh3BG350800 Rh3CG347500 Rh3DG350100
rosa_wichuraiana	Rw3G027550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1895
AccB1I	GGYRCC	1 cut(s)	1208
AccBSI	CCGCTC	1 cut(s)	232
AccI	GTMKAC	1 cut(s)	594
AciI	CCGC	5 cut(s)	230, 440, 446, 461, 2018
AclI	AACGTT	1 cut(s)	451
AclWI	GGATC	5 cut(s)	960, 1047, 1703, 1716, 2062
AcoI	YGGCCR	2 cut(s)	562, 988
AcsI	RAATTY	3 cut(s)	313, 533, 1653
AcuI	CTGAAG	3 cut(s)	304, 1275, 1323
AcyI	GRCGYC	1 cut(s)	85
AdeI	CACNNNGTG	1 cut(s)	560
AfaI	GTAC	5 cut(s)	684, 787, 1226, 1477, 1825
AfiI	CCNNNNNNNGG	5 cut(s)	38, 181, 777, 866, 1463
AflII	CTTAAG	1 cut(s)	1424
AflIII	ACRYGT	1 cut(s)	2002
AgeI	ACCGGT	1 cut(s)	1478
AgsI	TTSAA	6 cut(s)	728, 803, 1052, 1222, 1434, 1651
AjnI	CCWGG	8 cut(s)	31, 178, 564, 748, 1243, 1492, 1703, 1849
AjuI	GAANNNNNNNTTGG	5 cut(s)	29, 518, 550, 1643, 1675
AloI	GAACNNNNNNTCC	2 cut(s)	1559, 1591
AluBI	AGCT	8 cut(s)	110, 347, 1048, 1067, 1754, 1780, 1941, 2133
AluI	AGCT	8 cut(s)	110, 347, 1048, 1067, 1754, 1780, 1941, 2133
Alw26I	GTCTC	5 cut(s)	225, 546, 640, 1493, 1859
AlwI	GGATC	5 cut(s)	960, 1047, 1703, 1716, 2062
AlwNI	CAGNNNCTG	1 cut(s)	1837
AoxI	GGCC	6 cut(s)	74, 227, 521, 562, 988, 1393
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	3 cut(s)	313, 533, 1653
AseI	ATTAAT	1 cut(s)	573
AsiGI	ACCGGT	1 cut(s)	1478
Asp700I	GAANNNNTTC	2 cut(s)	715, 1353
AspS9I	GGNCC	5 cut(s)	167, 522, 1394, 1595, 1701
AsuC2I	CCSGG	1 cut(s)	795
AsuHPI	GGTGA	2 cut(s)	616, 1865
AsuII	TTCGAA	2 cut(s)	380, 826
AvaII	GGWCC	3 cut(s)	167, 1595, 1701
BaeGI	GKGCMC	1 cut(s)	795
BalI	TGGCCA	2 cut(s)	564, 990
BamHI	GGATCC	1 cut(s)	1708
BanI	GGYRCC	1 cut(s)	1208
BanII	GRGCYC	1 cut(s)	915
BbvCI	CCTCAGC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	4 cut(s)	464, 959, 1376, 1721
BcgI	CGANNNNNNTGC	2 cut(s)	584, 618
BciT130I	CCWGG	8 cut(s)	33, 180, 566, 750, 1245, 1494, 1705, 1851
BciVI	GTATCC	1 cut(s)	738
BcnI	CCSGG	1 cut(s)	795
BcoDI	GTCTC	5 cut(s)	225, 546, 640, 1493, 1859
BfaI	CTAG	4 cut(s)	57, 417, 1064, 1419
BfmI	CTRYAG	1 cut(s)	369
BfrI	CTTAAG	1 cut(s)	1424
BfuI	GTATCC	1 cut(s)	738
BglI	GCCNNNNNGGC	2 cut(s)	82, 996
BisI	GCNGC	2 cut(s)	138, 230
BlsI	GCNGC	2 cut(s)	139, 231
Bme1390I	CCNGG	9 cut(s)	33, 180, 566, 750, 795, 1245, 1494, 1705, 1851
Bme18I	GGWCC	3 cut(s)	167, 1595, 1701
BmgT120I	GGNCC	5 cut(s)	167, 522, 1394, 1595, 1701
BmiI	GGNNCC	2 cut(s)	1210, 1710
BmrFI	CCNGG	9 cut(s)	33, 180, 566, 750, 795, 1245, 1494, 1705, 1851
BmrI	ACTGGG	2 cut(s)	1149, 1847
BmsI	GCATC	4 cut(s)	592, 646, 1093, 1804
BmuI	ACTGGG	2 cut(s)	1149, 1847
BplI	GAGNNNNNCTC	2 cut(s)	1521, 1553
BpmI	CTGGAG	1 cut(s)	960
Bpu10I	CCTNAGC	2 cut(s)	106, 916
Bpu14I	TTCGAA	2 cut(s)	380, 826
BpuEI	CTTGAG	1 cut(s)	664
BpuMI	CCSGG	1 cut(s)	795
BsaAI	YACGTR	1 cut(s)	1976
BsaBI	GATNNNNATC	1 cut(s)	1818
BsaHI	GRCGYC	1 cut(s)	85
BsaJI	CCNNGG	8 cut(s)	32, 130, 179, 525, 991, 1492, 1639, 1704
BsaWI	WCCGGW	1 cut(s)	1478
Bsc4I	CCNNNNNNNGG	5 cut(s)	38, 181, 777, 866, 1463
Bse118I	RCCGGY	2 cut(s)	1004, 1478
Bse1I	ACTGG	3 cut(s)	538, 1144, 1842
Bse3DI	GCAATG	2 cut(s)	1006, 1292
Bse8I	GATNNNNATC	1 cut(s)	1818
BseBI	CCWGG	8 cut(s)	33, 180, 566, 750, 1245, 1494, 1705, 1851
BseDI	CCNNGG	8 cut(s)	32, 130, 179, 525, 991, 1492, 1639, 1704
BseGI	GGATG	7 cut(s)	73, 970, 1129, 1490, 1713, 1792, 2070
BseJI	GATNNNNATC	1 cut(s)	1818
BseLI	CCNNNNNNNGG	5 cut(s)	38, 181, 777, 866, 1463
BseMI	GCAATG	2 cut(s)	1006, 1292
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	3 cut(s)	538, 1144, 1842
BseRI	GAGGAG	2 cut(s)	321, 402
BseSI	GKGCMC	1 cut(s)	795
BseXI	GCAGC	1 cut(s)	124
BseYI	CCCAGC	2 cut(s)	347, 1463
BsgI	GTGCAG	2 cut(s)	1383, 1815
BshFI	GGCC	6 cut(s)	76, 229, 523, 564, 990, 1395
BshNI	GGYRCC	1 cut(s)	1208
BshTI	ACCGGT	1 cut(s)	1478
BsiSI	CCGG	4 cut(s)	795, 1005, 1479, 1911
BslFI	GGGAC	1 cut(s)	1621
BslI	CCNNNNNNNGG	5 cut(s)	38, 181, 777, 866, 1463
BsmAI	GTCTC	5 cut(s)	225, 546, 640, 1493, 1859
BsmFI	GGGAC	1 cut(s)	1621
BsmI	GAATGC	1 cut(s)	1515
BsnI	GGCC	6 cut(s)	76, 229, 523, 564, 990, 1395
Bsp119I	TTCGAA	2 cut(s)	380, 826
Bsp1286I	GDGCHC	2 cut(s)	795, 915
Bsp143I	GATC	5 cut(s)	952, 1039, 1330, 1708, 2067
BspACI	CCGC	5 cut(s)	230, 440, 446, 461, 2018
BspANI	GGCC	6 cut(s)	76, 229, 523, 564, 990, 1395
BspCNI	CTCAG	1 cut(s)	119
BspLI	GGNNCC	2 cut(s)	1210, 1710
BspPI	GGATC	5 cut(s)	960, 1047, 1703, 1716, 2062
BspQI	GCTCTTC	1 cut(s)	903
BspT104I	TTCGAA	2 cut(s)	380, 826
BspT107I	GGYRCC	1 cut(s)	1208
BspTI	CTTAAG	1 cut(s)	1424
BsrBI	CCGCTC	1 cut(s)	232
BsrDI	GCAATG	2 cut(s)	1006, 1292
BsrFI	RCCGGY	2 cut(s)	1004, 1478
BsrI	ACTGG	3 cut(s)	538, 1144, 1842
BssAI	RCCGGY	2 cut(s)	1004, 1478
BssECI	CCNNGG	8 cut(s)	32, 130, 179, 525, 991, 1492, 1639, 1704
BssMI	GATC	5 cut(s)	952, 1039, 1330, 1708, 2067
BssNI	GRCGYC	1 cut(s)	85
BssT1I	CCWWGG	4 cut(s)	130, 525, 991, 1639
Bst2UI	CCWGG	8 cut(s)	33, 180, 566, 750, 1245, 1494, 1705, 1851
Bst4CI	ACNGT	8 cut(s)	11, 273, 790, 899, 1163, 1267, 1793, 1808
Bst6I	CTCTTC	2 cut(s)	723, 903
BstACI	GRCGYC	1 cut(s)	85
BstAFI	CTTAAG	1 cut(s)	1424
BstAPI	GCANNNNNTGC	1 cut(s)	1907
BstBAI	YACGTR	1 cut(s)	1976
BstBI	TTCGAA	2 cut(s)	380, 826
BstC8I	GCNNGC	3 cut(s)	459, 1006, 1924
BstDEI	CTNAG	3 cut(s)	106, 916, 1677
BstEII	GGTNACC	1 cut(s)	352
BstF5I	GGATG	7 cut(s)	73, 970, 1129, 1490, 1713, 1792, 2070
BstKTI	GATC	5 cut(s)	955, 1042, 1333, 1711, 2070
BstMAI	GTCTC	5 cut(s)	225, 546, 640, 1493, 1859
BstMBI	GATC	5 cut(s)	952, 1039, 1330, 1708, 2067
BstMWI	GCNNNNNNNGC	9 cut(s)	82, 161, 454, 996, 1005, 1392, 1751, 1907, 2015
BstNI	CCWGG	8 cut(s)	33, 180, 566, 750, 1245, 1494, 1705, 1851
BstNSI	RCATGY	1 cut(s)	2006
BstPI	GGTNACC	1 cut(s)	352
BstSCI	CCNGG	9 cut(s)	31, 178, 564, 748, 793, 1243, 1492, 1703, 1849
BstSFI	CTRYAG	1 cut(s)	369
BstSLI	GKGCMC	1 cut(s)	795
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	1708
BstYI	RGATCY	1 cut(s)	1708
BsuI	GTATCC	1 cut(s)	738
BsuRI	GGCC	6 cut(s)	76, 229, 523, 564, 990, 1395
BtsCI	GGATG	7 cut(s)	73, 970, 1129, 1490, 1713, 1792, 2070
BtsIMutI	CAGTG	2 cut(s)	795, 1835
Cac8I	GCNNGC	3 cut(s)	459, 1006, 1924
CaiI	CAGNNNCTG	1 cut(s)	1837
Cfr10I	RCCGGY	2 cut(s)	1004, 1478
Cfr13I	GGNCC	5 cut(s)	167, 522, 1394, 1595, 1701
CseI	GACGC	1 cut(s)	74
CsiI	ACCWGGT	1 cut(s)	748
Csp6I	GTAC	5 cut(s)	683, 786, 1225, 1476, 1824
CspAI	ACCGGT	1 cut(s)	1478
CviAII	CATG	6 cut(s)	494, 688, 1178, 1185, 1586, 2003
CviQI	GTAC	5 cut(s)	683, 786, 1225, 1476, 1824
DdeI	CTNAG	3 cut(s)	106, 916, 1677
DpnI	GATC	5 cut(s)	954, 1041, 1332, 1710, 2069
DpnII	GATC	5 cut(s)	952, 1039, 1330, 1708, 2067
DraIII	CACNNNGTG	1 cut(s)	560
EaeI	YGGCCR	2 cut(s)	562, 988
Eam1104I	CTCTTC	2 cut(s)	723, 903
EarI	CTCTTC	2 cut(s)	723, 903
Eco130I	CCWWGG	4 cut(s)	130, 525, 991, 1639
Eco147I	AGGCCT	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	915
Eco32I	GATATC	1 cut(s)	2087
Eco47I	GGWCC	3 cut(s)	167, 1595, 1701
Eco57I	CTGAAG	3 cut(s)	304, 1275, 1323
Eco91I	GGTNACC	1 cut(s)	352
EcoO109I	RGGNCCY	2 cut(s)	1394, 1701
EcoO65I	GGTNACC	1 cut(s)	352
EcoRII	CCWGG	8 cut(s)	31, 178, 564, 748, 1243, 1492, 1703, 1849
EcoRV	GATATC	1 cut(s)	2087
EcoT14I	CCWWGG	4 cut(s)	130, 525, 991, 1639
EcoT38I	GRGCYC	1 cut(s)	915
ErhI	CCWWGG	4 cut(s)	130, 525, 991, 1639
FaeI	CATG	6 cut(s)	497, 691, 1181, 1188, 1589, 2006
FaqI	GGGAC	1 cut(s)	1621
FatI	CATG	6 cut(s)	493, 687, 1177, 1184, 1585, 2002
FblI	GTMKAC	1 cut(s)	594
Fnu4HI	GCNGC	2 cut(s)	138, 230
FokI	GGATG	7 cut(s)	80, 977, 1136, 1497, 1700, 1799, 2077
FriOI	GRGCYC	1 cut(s)	915
Fsp4HI	GCNGC	2 cut(s)	138, 230
FspBI	CTAG	4 cut(s)	57, 417, 1064, 1419
GluI	GCNGC	2 cut(s)	138, 230
GsaI	CCCAGC	2 cut(s)	351, 1467
GsuI	CTGGAG	1 cut(s)	960
HaeIII	GGCC	6 cut(s)	76, 229, 523, 564, 990, 1395
HapII	CCGG	4 cut(s)	795, 1005, 1479, 1911
HgaI	GACGC	1 cut(s)	74
Hin1I	GRCGYC	1 cut(s)	85
Hin1II	CATG	6 cut(s)	497, 691, 1181, 1188, 1589, 2006
HincII	GTYRAC	2 cut(s)	595, 2049
HindII	GTYRAC	2 cut(s)	595, 2049
HindIII	AAGCTT	3 cut(s)	1046, 1778, 2131
HpaII	CCGG	4 cut(s)	795, 1005, 1479, 1911
HphI	GGTGA	2 cut(s)	616, 1865
Hpy166II	GTNNAC	4 cut(s)	595, 1263, 1567, 2049
Hpy188I	TCNGA	7 cut(s)	217, 904, 1044, 1521, 1833, 1996, 2091
Hpy188III	TCNNGA	6 cut(s)	20, 322, 405, 517, 892, 939
Hpy8I	GTNNAC	4 cut(s)	595, 1263, 1567, 2049
HpyAV	CCTTC	7 cut(s)	328, 402, 411, 730, 734, 1138, 1608
HpyCH4III	ACNGT	8 cut(s)	11, 273, 790, 899, 1163, 1267, 1793, 1808
HpyCH4IV	ACGT	2 cut(s)	451, 1975
HpyF10VI	GCNNNNNNNGC	9 cut(s)	82, 161, 454, 996, 1005, 1392, 1751, 1907, 2015
HpyF3I	CTNAG	3 cut(s)	106, 916, 1677
HpySE526I	ACGT	2 cut(s)	451, 1975
Hsp92I	GRCGYC	1 cut(s)	85
Hsp92II	CATG	6 cut(s)	497, 691, 1181, 1188, 1589, 2006
KroI	GCCGGC	1 cut(s)	1004
KroNI	GCCGGC	1 cut(s)	1006
Kzo9I	GATC	5 cut(s)	952, 1039, 1330, 1708, 2067
LguI	GCTCTTC	1 cut(s)	903
LmnI	GCTCC	2 cut(s)	145, 862
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	4 cut(s)	592, 646, 1093, 1804
MabI	ACCWGGT	1 cut(s)	748
MaeI	CTAG	4 cut(s)	57, 417, 1064, 1419
MaeII	ACGT	2 cut(s)	451, 1975
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	5 cut(s)	954, 1041, 1332, 1710, 2069
MbiI	CCGCTC	1 cut(s)	232
MboI	GATC	5 cut(s)	952, 1039, 1330, 1708, 2067
MboII	GAAGA	7 cut(s)	105, 479, 720, 740, 920, 927, 2107
MfeI	CAATTG	1 cut(s)	1278
MflI	RGATCY	1 cut(s)	1708
MhlI	GDGCHC	2 cut(s)	795, 915
MlsI	TGGCCA	2 cut(s)	564, 990
MluNI	TGGCCA	2 cut(s)	564, 990
MlyI	GAGTC	4 cut(s)	17, 227, 897, 1861
MmeI	TCCRAC	8 cut(s)	454, 655, 826, 884, 1160, 1294, 1527, 2002
Mox20I	TGGCCA	2 cut(s)	564, 990
MroNI	GCCGGC	1 cut(s)	1004
MroXI	GAANNNNTTC	2 cut(s)	715, 1353
MscI	TGGCCA	2 cut(s)	564, 990
MseI	TTAA	6 cut(s)	476, 573, 1119, 1425, 1443, 1671
MslI	CAYNNNNRTG	1 cut(s)	1590
Msp20I	TGGCCA	2 cut(s)	564, 990
MspA1I	CMGCKG	2 cut(s)	347, 1941
MspCI	CTTAAG	1 cut(s)	1424
MspI	CCGG	4 cut(s)	795, 1005, 1479, 1911
MspR9I	CCNGG	9 cut(s)	33, 180, 566, 750, 795, 1245, 1494, 1705, 1851
MunI	CAATTG	1 cut(s)	1278
Mva1269I	GAATGC	1 cut(s)	1515
MvaI	CCWGG	8 cut(s)	33, 180, 566, 750, 1245, 1494, 1705, 1851
MwoI	GCNNNNNNNGC	9 cut(s)	82, 161, 454, 996, 1005, 1392, 1751, 1907, 2015
NaeI	GCCGGC	1 cut(s)	1006
NciI	CCSGG	1 cut(s)	795
NdeII	GATC	5 cut(s)	952, 1039, 1330, 1708, 2067
NgoMIV	GCCGGC	1 cut(s)	1004
NlaIII	CATG	6 cut(s)	497, 691, 1181, 1188, 1589, 2006
NlaIV	GGNNCC	2 cut(s)	1210, 1710
NspI	RCATGY	1 cut(s)	2006
NspV	TTCGAA	2 cut(s)	380, 826
PceI	AGGCCT	1 cut(s)	76
PciI	ACATGT	1 cut(s)	2002
PciSI	GCTCTTC	1 cut(s)	903
PctI	GAATGC	1 cut(s)	1515
PdiI	GCCGGC	1 cut(s)	1006
PdmI	GAANNNNTTC	2 cut(s)	715, 1353
PfeI	GAWTC	7 cut(s)	265, 325, 668, 1181, 1856, 1933, 1991
PinAI	ACCGGT	1 cut(s)	1478
PkrI	GCNGC	2 cut(s)	139, 231
PleI	GAGTC	4 cut(s)	17, 226, 896, 1861
PpsI	GAGTC	4 cut(s)	17, 226, 896, 1861
Ppu21I	YACGTR	1 cut(s)	1976
PpuMI	RGGWCCY	1 cut(s)	1701
PscI	ACATGT	1 cut(s)	2002
PshBI	ATTAAT	1 cut(s)	573
PsiI	TTATAA	1 cut(s)	1895
Psp1406I	AACGTT	1 cut(s)	451
Psp5II	RGGWCCY	1 cut(s)	1701
Psp6I	CCWGG	8 cut(s)	31, 178, 564, 748, 1243, 1492, 1703, 1849
PspEI	GGTNACC	1 cut(s)	352
PspFI	CCCAGC	2 cut(s)	347, 1463
PspGI	CCWGG	8 cut(s)	31, 178, 564, 748, 1243, 1492, 1703, 1849
PspN4I	GGNNCC	2 cut(s)	1210, 1710
PspPI	GGNCC	5 cut(s)	167, 522, 1394, 1595, 1701
PspPPI	RGGWCCY	1 cut(s)	1701
PstNI	CAGNNNCTG	1 cut(s)	1837
PsuI	RGATCY	1 cut(s)	1708
PvuII	CAGCTG	2 cut(s)	347, 1941
RsaI	GTAC	5 cut(s)	684, 787, 1226, 1477, 1825
RsaNI	GTAC	5 cut(s)	683, 786, 1225, 1476, 1824
RseI	CAYNNNNRTG	1 cut(s)	1590
SalI	GTCGAC	1 cut(s)	593
SapI	GCTCTTC	1 cut(s)	903
SaqAI	TTAA	6 cut(s)	476, 573, 1119, 1425, 1443, 1671
SatI	GCNGC	2 cut(s)	138, 230
Sau3AI	GATC	5 cut(s)	952, 1039, 1330, 1708, 2067
Sau96I	GGNCC	5 cut(s)	167, 522, 1394, 1595, 1701
SchI	GAGTC	4 cut(s)	17, 227, 897, 1861
ScrFI	CCNGG	9 cut(s)	33, 180, 566, 750, 795, 1245, 1494, 1705, 1851
SduI	GDGCHC	2 cut(s)	795, 915
SexAI	ACCWGGT	1 cut(s)	748
SfaNI	GCATC	4 cut(s)	592, 646, 1093, 1804
SfcI	CTRYAG	1 cut(s)	369
SfuI	TTCGAA	2 cut(s)	380, 826
SinI	GGWCC	3 cut(s)	167, 1595, 1701
SmiMI	CAYNNNNRTG	1 cut(s)	1590
SmlI	CTYRAG	2 cut(s)	643, 1424
SmoI	CTYRAG	2 cut(s)	643, 1424
SseBI	AGGCCT	1 cut(s)	76
SsiI	CCGC	5 cut(s)	230, 440, 446, 461, 2018
SspMI	CTAG	4 cut(s)	57, 417, 1064, 1419
StuI	AGGCCT	1 cut(s)	76
StyD4I	CCNGG	9 cut(s)	31, 178, 564, 748, 793, 1243, 1492, 1703, 1849
StyI	CCWWGG	4 cut(s)	130, 525, 991, 1639
TaaI	ACNGT	8 cut(s)	11, 273, 790, 899, 1163, 1267, 1793, 1808
TaiI	ACGT	2 cut(s)	454, 1978
TaqI	TCGA	6 cut(s)	122, 234, 380, 404, 594, 826
TaqII	GACCGA	1 cut(s)	2103
TatI	WGTACW	2 cut(s)	682, 1224
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	7 cut(s)	265, 325, 668, 1181, 1856, 1933, 1991
Tru1I	TTAA	6 cut(s)	476, 573, 1119, 1425, 1443, 1671
Tru9I	TTAA	6 cut(s)	476, 573, 1119, 1425, 1443, 1671
TscAI	CASTG	2 cut(s)	795, 1842
TseI	GCWGC	1 cut(s)	137
TspDTI	ATGAA	8 cut(s)	196, 201, 482, 749, 1194, 1602, 1946, 2004
TspGWI	ACGGA	1 cut(s)	1706
TspRI	CASTG	2 cut(s)	795, 1842
Vha464I	CTTAAG	1 cut(s)	1424
VpaK11BI	GGWCC	3 cut(s)	167, 1595, 1701
VspI	ATTAAT	1 cut(s)	573
XapI	RAATTY	3 cut(s)	313, 533, 1653
XceI	RCATGY	1 cut(s)	2006
XcmI	CCANNNNNNNNNTGG	2 cut(s)	779, 1956
XmiI	GTMKAC	1 cut(s)	594
XmnI	GAANNNNTTC	2 cut(s)	715, 1353
XspI	CTAG	4 cut(s)	57, 417, 1064, 1419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.