Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0010169

Physical Location & Seq

Genomic Coordinates Reverse (-)

41581258 .. 41583450

Gene Structure 2193 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG350100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2193 bp

ATGGAACACAGTTTTGGTCAAGACTCTGCTCCTGGGTTTGGGTCTTTTGATAAGTCTAGGGTTTTGGATGTAAGGCCTTTGAGGCGTCTTGTTCCTGTATTCCCCTCAGCTTGTTCATTTTCGACACCCCAAGGTGCTGCTCCTTTTGTTTGTGCTTCCCCTGCTGGTCCTTTCCCACCTGGGGTTTCCCCATTTTTCCCCTTTTTCATTTCATCAGAGTCTCAAAGGCCGCTCGAACAAACACCTACTGGTATACCCAATGAGAATCAACCGTTTGGCTTCACTAATCCAATATCTAATGCAGTTCCAATAAATTCCTTCAGGAATCCTCCTCCACCCTCAACACCTGGGGTAACCCCCAACCAGACTACAGCAACTTCGAATGGAGGAGATACTACACCTTCGAGAAGGATTACTAGAAGTCGTGTCCAACCACAACCGCAACCTGGGCTTGCGGAGGAAGATGGTTTGAGCGAGAGTGTTGTTGATGCAGAAAATAAAAGGAGGGTCGGGAGGCCAAAGGGTAAATTCCAGTCTCAAAAGAGGACACGGGGTGGCCAGGACATTAATGTTGCCTTGCCTGATGTCGACATTGATGCAATAGTTGATAATGTTCTCACCTCATATACCAATACCTTGAGACAAACTGATGCCAACAGGGAATCAGTTGGATATGTACTCATGTGTTATGATTTGCTACGAAGAAAGATTTCACAAATTGAAGAGATGAAGGAAGGGATACCAGGAGTGTCGAGAACAGGACGCTCTGATCTAAGGGCTGGAACTCTCTTCATGAATAAGGGAATTAGGACAAATGCCCAAAAGAGGATTGGTACAGTGCCCGGTGTTGAAGTTGGGGATATTTTCTTTTTTCGAATGGAATTGTGCTTGGTTGGATTACACGCTCCAACTATGGGTGGGATTGATTATATGGGAGTCAAGAACAGTTCAGAGGAAGAGCCCTTAGCATTGAGCATTGTTTCTTCTGGAGGTTATGAGGATCATATACAGGATGGGAATGAGTTGATATATAGTGGCCAAGGTGGCAATGCCGGCAACGATAACAGGAAAGATAAGGAAACAAAGGATCAGAAGCTTGAAAGGGGTAATCTAGCTTTGGAGAAAAGTTTGCATCGGGGTAATGATGTAAGAGTAATTCGGGGTGTTAAGGATGTTTCTAATCCAACTGGGAAGGTATATGTCTATGACGGTCTATACAAAATCCATGAATCATGGGTAGATAAAGGAAAGAGTGGTGCCAATGTATTCAAGTACAGATTGGTAAGATTACCTGGACAGCCTGAAGCGTTTACAGTATGGAAATCAATTGAGCAATGGAAAGAAACAAATACTACAAGGGTTGGATTGATATTGCCAGATCTTACTTCAGGGGCAGAAACTTTTCCCGTTTCTCTTGTAAATGATGTAGATGGCGAGAAAGGCCCTGCACACTTCACATATATTCCTAGTCTTAAGTATTCAAAACCTGTTAATCTTACAGAACCTACTGCTGGGTGTAATTGTACCGGTGGATGTCTCCCTGGTAATTCCAACTGCCCTTGCATTCAGAAAAATGGAGGTTATCTCCCATATACTGCAAATGGGCTTCTTGTGAACCAAAAATCCTTATTACATGAATGTGGTCCTTCCTGCAAATGCCCTCCTAATTGTCGTAATCGTGTGTCCCAAGGTGGCTTGAAAATTCGTTTGGAAGTGTTTAAGACTAAGGATAAAGGTTGGGGTTTGAGGTCCTGGGATCCCATCCGTGCTGGTGCTTTCTTATGCGAGTATGCAGGGGAAGCTCTAAATGTTTCTGGTATAGAAAAGCTTGGGGATGACCGTGCAGAAGATTACAGTTTTGATGCTAATCGTACTTGTCAGACACTGGGAGTTCTGCCTGGTGATTCTAATGAGACTCCAAATGTCCCTTTTCCTCTACTTATAAGTGCAAATACTGCCGGAAATGTTGCTCGCTTTATGAATCACAGCTGTTCTCCAAATGTGTTCTGGCAACCAATTTTACGTGAAAATAAAAATGAATCTGATTTACATGTTGCGTTTTATGCGGTTGGACACATTCCTCCTATGACAGAGTTGACTTATGATTATGGGATGATCCCTTATGAGAAAGGATATCAGAGGAAGAAAATATGCCTTTGTCGGTCAATAAAGTGTAGAAGCTTCTTTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00260 ko00310 ko01100 ko04146 ko04211 map00260 map00310 map01100 map04146 map04211

Pfam Domains

Protein Families

AT_hook Pre-SET SAD_SRA SET

Protein Analysis

730

Amino Acids

80.06

Weight (kDa)

8.47

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAD_SRA	PF02182	276 - 433	1.2e-55	SAD/SRA domain
Pre-SET	PF05033	463 - 560	1.5e-23	Pre-SET motif
SET	PF00856	579 - 704	1.8e-17	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05900
fragaria_vesca	FvH4_7g07980
malus_domestica	MD00G1068300.v1.1 MD12G1112200.v1.1 MD14G1101300.v1.1
prunus_persica	Prupe.7G021100_v2.0.a1 Prupe.7G021100_v2.0.a1
pyrus_communis	pycom12g09140 pycom14g08780
rosa_chinensis	RchiOBHm_Chr3g0494321 RchiOBHm_Chr3g0494471
rosa_laevigata	RLG00000022673
rosa_multiflora	Rmu_sc0000152.1_g000010
rosa_roxburghii	Rroxscaffold_6G00391110
rosa_rugosa	Rorug03G0265400
rosa_samantha	Rh3AG314800 Rh3AG315600 Rh3BG350800 Rh3CG347500 Rh3DG350100
rosa_wichuraiana	Rw3G027550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1943
AccB1I	GGYRCC	1 cut(s)	1256
AccBSI	CCGCTC	1 cut(s)	232
AccI	GTMKAC	2 cut(s)	253, 588
AciI	CCGC	4 cut(s)	230, 440, 455, 2066
AclWI	GGATC	5 cut(s)	1008, 1095, 1751, 1764, 2110
AcoI	YGGCCR	2 cut(s)	556, 1036
AcsI	RAATTY	3 cut(s)	313, 527, 1701
AcuI	CTGAAG	3 cut(s)	304, 1323, 1371
AcyI	GRCGYC	1 cut(s)	85
AdeI	CACNNNGTG	1 cut(s)	554
AfaI	GTAC	5 cut(s)	678, 835, 1274, 1525, 1873
AfiI	CCNNNNNNNGG	6 cut(s)	38, 181, 446, 825, 914, 1511
AflII	CTTAAG	1 cut(s)	1472
AflIII	ACRYGT	1 cut(s)	2050
AgeI	ACCGGT	1 cut(s)	1526
AgsI	TTSAA	6 cut(s)	722, 851, 1100, 1270, 1482, 1699
AjuI	GAANNNNNNNTTGG	3 cut(s)	29, 1691, 1723
AloI	GAACNNNNNNTCC	2 cut(s)	1607, 1639
AluBI	AGCT	7 cut(s)	110, 1096, 1115, 1802, 1828, 1989, 2181
AluI	AGCT	7 cut(s)	110, 1096, 1115, 1802, 1828, 1989, 2181
Alw26I	GTCTC	5 cut(s)	225, 540, 634, 1541, 1907
AlwI	GGATC	5 cut(s)	1008, 1095, 1751, 1764, 2110
AlwNI	CAGNNNCTG	1 cut(s)	1885
AoxI	GGCC	6 cut(s)	74, 227, 515, 556, 1036, 1441
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	3 cut(s)	313, 527, 1701
AseI	ATTAAT	1 cut(s)	567
AsiGI	ACCGGT	1 cut(s)	1526
Asp700I	GAANNNNTTC	2 cut(s)	709, 1401
AspS9I	GGNCC	4 cut(s)	167, 1442, 1643, 1749
AsuC2I	CCSGG	1 cut(s)	843
AsuHPI	GGTGA	2 cut(s)	610, 1913
AsuII	TTCGAA	2 cut(s)	380, 874
AvaII	GGWCC	3 cut(s)	167, 1643, 1749
BaeGI	GKGCMC	1 cut(s)	843
BalI	TGGCCA	2 cut(s)	558, 1038
BamHI	GGATCC	1 cut(s)	1756
BanI	GGYRCC	1 cut(s)	1256
BanII	GRGCYC	1 cut(s)	963
BbvCI	CCTCAGC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	4 cut(s)	458, 1007, 1424, 1769
BcgI	CGANNNNNNTGC	2 cut(s)	578, 612
BciVI	GTATCC	1 cut(s)	732
BcnI	CCSGG	1 cut(s)	843
BcoDI	GTCTC	5 cut(s)	225, 540, 634, 1541, 1907
BfaI	CTAG	4 cut(s)	57, 417, 1112, 1467
BfmI	CTRYAG	1 cut(s)	369
BfrI	CTTAAG	1 cut(s)	1472
BfuI	GTATCC	1 cut(s)	732
BglI	GCCNNNNNGGC	2 cut(s)	82, 1044
BglII	AGATCT	1 cut(s)	1378
BisI	GCNGC	2 cut(s)	138, 230
BlsI	GCNGC	2 cut(s)	139, 231
Bme18I	GGWCC	3 cut(s)	167, 1643, 1749
BmgT120I	GGNCC	4 cut(s)	167, 1442, 1643, 1749
BmiI	GGNNCC	2 cut(s)	1258, 1758
BmrI	ACTGGG	2 cut(s)	1197, 1895
BmsI	GCATC	5 cut(s)	478, 586, 640, 1141, 1852
BmuI	ACTGGG	2 cut(s)	1197, 1895
BplI	GAGNNNNNCTC	2 cut(s)	1569, 1601
BpmI	CTGGAG	1 cut(s)	1008
Bpu10I	CCTNAGC	2 cut(s)	106, 964
Bpu14I	TTCGAA	2 cut(s)	380, 874
BpuEI	CTTGAG	1 cut(s)	658
BpuMI	CCSGG	1 cut(s)	843
BsaAI	YACGTR	1 cut(s)	2024
BsaBI	GATNNNNATC	1 cut(s)	1866
BsaHI	GRCGYC	1 cut(s)	85
BsaJI	CCNNGG	9 cut(s)	32, 130, 179, 347, 446, 1039, 1540, 1687, 1752
BsaWI	WCCGGW	1 cut(s)	1526
Bsc4I	CCNNNNNNNGG	6 cut(s)	38, 181, 446, 825, 914, 1511
Bse118I	RCCGGY	2 cut(s)	1052, 1526
Bse1I	ACTGG	4 cut(s)	253, 532, 1192, 1890
Bse3DI	GCAATG	2 cut(s)	1054, 1340
Bse8I	GATNNNNATC	1 cut(s)	1866
BseDI	CCNNGG	9 cut(s)	32, 130, 179, 347, 446, 1039, 1540, 1687, 1752
BseGI	GGATG	7 cut(s)	73, 1018, 1177, 1538, 1761, 1840, 2118
BseJI	GATNNNNATC	1 cut(s)	1866
BseLI	CCNNNNNNNGG	6 cut(s)	38, 181, 446, 825, 914, 1511
BseMI	GCAATG	2 cut(s)	1054, 1340
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	4 cut(s)	253, 532, 1192, 1890
BseRI	GAGGAG	2 cut(s)	321, 402
BseSI	GKGCMC	1 cut(s)	843
BseXI	GCAGC	1 cut(s)	124
BseYI	CCCAGC	1 cut(s)	1511
BsgI	GTGCAG	2 cut(s)	1431, 1863
BshFI	GGCC	6 cut(s)	76, 229, 517, 558, 1038, 1443
BshNI	GGYRCC	1 cut(s)	1256
BshTI	ACCGGT	1 cut(s)	1526
BsiSI	CCGG	4 cut(s)	843, 1053, 1527, 1959
BslFI	GGGAC	2 cut(s)	1669, 1910
BslI	CCNNNNNNNGG	6 cut(s)	38, 181, 446, 825, 914, 1511
BsmAI	GTCTC	5 cut(s)	225, 540, 634, 1541, 1907
BsmFI	GGGAC	2 cut(s)	1669, 1910
BsmI	GAATGC	1 cut(s)	1563
BsnI	GGCC	6 cut(s)	76, 229, 517, 558, 1038, 1443
Bsp119I	TTCGAA	2 cut(s)	380, 874
Bsp1286I	GDGCHC	2 cut(s)	843, 963
Bsp143I	GATC	6 cut(s)	769, 1000, 1087, 1378, 1756, 2115
BspACI	CCGC	4 cut(s)	230, 440, 455, 2066
BspANI	GGCC	6 cut(s)	76, 229, 517, 558, 1038, 1443
BspCNI	CTCAG	1 cut(s)	119
BspHI	TCATGA	1 cut(s)	792
BspLI	GGNNCC	2 cut(s)	1258, 1758
BspPI	GGATC	5 cut(s)	1008, 1095, 1751, 1764, 2110
BspQI	GCTCTTC	1 cut(s)	951
BspT104I	TTCGAA	2 cut(s)	380, 874
BspT107I	GGYRCC	1 cut(s)	1256
BspTI	CTTAAG	1 cut(s)	1472
BsrBI	CCGCTC	1 cut(s)	232
BsrDI	GCAATG	2 cut(s)	1054, 1340
BsrFI	RCCGGY	2 cut(s)	1052, 1526
BsrI	ACTGG	4 cut(s)	253, 532, 1192, 1890
BssAI	RCCGGY	2 cut(s)	1052, 1526
BssECI	CCNNGG	9 cut(s)	32, 130, 179, 347, 446, 1039, 1540, 1687, 1752
BssMI	GATC	6 cut(s)	769, 1000, 1087, 1378, 1756, 2115
BssNAI	GTATAC	1 cut(s)	254
BssNI	GRCGYC	1 cut(s)	85
BssT1I	CCWWGG	3 cut(s)	130, 1039, 1687
Bst1107I	GTATAC	1 cut(s)	254
Bst4CI	ACNGT	8 cut(s)	11, 273, 838, 947, 1211, 1315, 1841, 1856
Bst6I	CTCTTC	3 cut(s)	717, 794, 951
BstACI	GRCGYC	1 cut(s)	85
BstAFI	CTTAAG	1 cut(s)	1472
BstAPI	GCANNNNNTGC	1 cut(s)	1955
BstBAI	YACGTR	1 cut(s)	2024
BstBI	TTCGAA	2 cut(s)	380, 874
BstC8I	GCNNGC	3 cut(s)	453, 1054, 1972
BstDEI	CTNAG	4 cut(s)	106, 773, 964, 1725
BstEII	GGTNACC	1 cut(s)	352
BstF5I	GGATG	7 cut(s)	73, 1018, 1177, 1538, 1761, 1840, 2118
BstKTI	GATC	6 cut(s)	772, 1003, 1090, 1381, 1759, 2118
BstMAI	GTCTC	5 cut(s)	225, 540, 634, 1541, 1907
BstMBI	GATC	6 cut(s)	769, 1000, 1087, 1378, 1756, 2115
BstMWI	GCNNNNNNNGC	9 cut(s)	82, 161, 448, 1044, 1053, 1440, 1799, 1955, 2063
BstNSI	RCATGY	1 cut(s)	2054
BstPI	GGTNACC	1 cut(s)	352
BstSFI	CTRYAG	1 cut(s)	369
BstSLI	GKGCMC	1 cut(s)	843
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	2 cut(s)	1378, 1756
BstYI	RGATCY	2 cut(s)	1378, 1756
BstZ17I	GTATAC	1 cut(s)	254
BsuI	GTATCC	1 cut(s)	732
BsuRI	GGCC	6 cut(s)	76, 229, 517, 558, 1038, 1443
BtsCI	GGATG	7 cut(s)	73, 1018, 1177, 1538, 1761, 1840, 2118
BtsIMutI	CAGTG	2 cut(s)	843, 1883
Cac8I	GCNNGC	3 cut(s)	453, 1054, 1972
CaiI	CAGNNNCTG	1 cut(s)	1885
CciI	TCATGA	1 cut(s)	792
Cfr10I	RCCGGY	2 cut(s)	1052, 1526
Cfr13I	GGNCC	4 cut(s)	167, 1442, 1643, 1749
CseI	GACGC	2 cut(s)	74, 771
Csp6I	GTAC	5 cut(s)	677, 834, 1273, 1524, 1872
CspAI	ACCGGT	1 cut(s)	1526
CviAII	CATG	6 cut(s)	682, 793, 1226, 1233, 1634, 2051
CviQI	GTAC	5 cut(s)	677, 834, 1273, 1524, 1872
DdeI	CTNAG	4 cut(s)	106, 773, 964, 1725
DpnI	GATC	6 cut(s)	771, 1002, 1089, 1380, 1758, 2117
DpnII	GATC	6 cut(s)	769, 1000, 1087, 1378, 1756, 2115
DraIII	CACNNNGTG	1 cut(s)	554
EaeI	YGGCCR	2 cut(s)	556, 1036
Eam1104I	CTCTTC	3 cut(s)	717, 794, 951
EarI	CTCTTC	3 cut(s)	717, 794, 951
Eco130I	CCWWGG	3 cut(s)	130, 1039, 1687
Eco147I	AGGCCT	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	963
Eco32I	GATATC	1 cut(s)	2135
Eco47I	GGWCC	3 cut(s)	167, 1643, 1749
Eco57I	CTGAAG	3 cut(s)	304, 1323, 1371
Eco91I	GGTNACC	1 cut(s)	352
EcoO109I	RGGNCCY	2 cut(s)	1442, 1749
EcoO65I	GGTNACC	1 cut(s)	352
EcoRV	GATATC	1 cut(s)	2135
EcoT14I	CCWWGG	3 cut(s)	130, 1039, 1687
EcoT38I	GRGCYC	1 cut(s)	963
ErhI	CCWWGG	3 cut(s)	130, 1039, 1687
FaeI	CATG	6 cut(s)	685, 796, 1229, 1236, 1637, 2054
FaqI	GGGAC	2 cut(s)	1669, 1910
FatI	CATG	6 cut(s)	681, 792, 1225, 1232, 1633, 2050
FblI	GTMKAC	2 cut(s)	253, 588
Fnu4HI	GCNGC	2 cut(s)	138, 230
FokI	GGATG	7 cut(s)	80, 1025, 1184, 1545, 1748, 1847, 2125
FriOI	GRGCYC	1 cut(s)	963
Fsp4HI	GCNGC	2 cut(s)	138, 230
FspBI	CTAG	4 cut(s)	57, 417, 1112, 1467
GluI	GCNGC	2 cut(s)	138, 230
GsaI	CCCAGC	1 cut(s)	1515
GsuI	CTGGAG	1 cut(s)	1008
HaeIII	GGCC	6 cut(s)	76, 229, 517, 558, 1038, 1443
HapII	CCGG	4 cut(s)	843, 1053, 1527, 1959
HgaI	GACGC	2 cut(s)	74, 771
Hin1I	GRCGYC	1 cut(s)	85
Hin1II	CATG	6 cut(s)	685, 796, 1229, 1236, 1637, 2054
HincII	GTYRAC	2 cut(s)	589, 2097
HindII	GTYRAC	2 cut(s)	589, 2097
HindIII	AAGCTT	3 cut(s)	1094, 1826, 2179
HpaII	CCGG	4 cut(s)	843, 1053, 1527, 1959
HphI	GGTGA	2 cut(s)	610, 1913
Hpy166II	GTNNAC	5 cut(s)	254, 589, 1311, 1615, 2097
Hpy188I	TCNGA	8 cut(s)	217, 769, 952, 1092, 1569, 1881, 2044, 2139
Hpy188III	TCNNGA	8 cut(s)	20, 322, 405, 511, 753, 793, 940, 987
Hpy8I	GTNNAC	5 cut(s)	254, 589, 1311, 1615, 2097
HpyAV	CCTTC	7 cut(s)	328, 402, 411, 724, 728, 1186, 1656
HpyCH4III	ACNGT	8 cut(s)	11, 273, 838, 947, 1211, 1315, 1841, 1856
HpyCH4IV	ACGT	1 cut(s)	2023
HpyF10VI	GCNNNNNNNGC	9 cut(s)	82, 161, 448, 1044, 1053, 1440, 1799, 1955, 2063
HpyF3I	CTNAG	4 cut(s)	106, 773, 964, 1725
HpySE526I	ACGT	1 cut(s)	2023
Hsp92I	GRCGYC	1 cut(s)	85
Hsp92II	CATG	6 cut(s)	685, 796, 1229, 1236, 1637, 2054
KroI	GCCGGC	1 cut(s)	1052
KroNI	GCCGGC	1 cut(s)	1054
Kzo9I	GATC	6 cut(s)	769, 1000, 1087, 1378, 1756, 2115
LguI	GCTCTTC	1 cut(s)	951
LmnI	GCTCC	3 cut(s)	34, 145, 910
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	5 cut(s)	478, 586, 640, 1141, 1852
MaeI	CTAG	4 cut(s)	57, 417, 1112, 1467
MaeII	ACGT	1 cut(s)	2023
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	6 cut(s)	771, 1002, 1089, 1380, 1758, 2117
MbiI	CCGCTC	1 cut(s)	232
MboI	GATC	6 cut(s)	769, 1000, 1087, 1378, 1756, 2115
MboII	GAAGA	8 cut(s)	473, 714, 734, 781, 968, 975, 1859, 2155
MfeI	CAATTG	1 cut(s)	1326
MflI	RGATCY	2 cut(s)	1378, 1756
MhlI	GDGCHC	2 cut(s)	843, 963
MlsI	TGGCCA	2 cut(s)	558, 1038
MluNI	TGGCCA	2 cut(s)	558, 1038
MlyI	GAGTC	4 cut(s)	17, 227, 945, 1909
MmeI	TCCRAC	8 cut(s)	454, 649, 874, 932, 1208, 1342, 1575, 2050
Mox20I	TGGCCA	2 cut(s)	558, 1038
MroNI	GCCGGC	1 cut(s)	1052
MroXI	GAANNNNTTC	2 cut(s)	709, 1401
MscI	TGGCCA	2 cut(s)	558, 1038
MseI	TTAA	5 cut(s)	567, 1167, 1473, 1491, 1719
MslI	CAYNNNNRTG	1 cut(s)	1638
Msp20I	TGGCCA	2 cut(s)	558, 1038
MspA1I	CMGCKG	1 cut(s)	1989
MspCI	CTTAAG	1 cut(s)	1472
MspI	CCGG	4 cut(s)	843, 1053, 1527, 1959
MunI	CAATTG	1 cut(s)	1326
Mva1269I	GAATGC	1 cut(s)	1563
MwoI	GCNNNNNNNGC	9 cut(s)	82, 161, 448, 1044, 1053, 1440, 1799, 1955, 2063
NaeI	GCCGGC	1 cut(s)	1054
NciI	CCSGG	1 cut(s)	843
NdeII	GATC	6 cut(s)	769, 1000, 1087, 1378, 1756, 2115
NgoMIV	GCCGGC	1 cut(s)	1052
NlaIII	CATG	6 cut(s)	685, 796, 1229, 1236, 1637, 2054
NlaIV	GGNNCC	2 cut(s)	1258, 1758
NspI	RCATGY	1 cut(s)	2054
NspV	TTCGAA	2 cut(s)	380, 874
PagI	TCATGA	1 cut(s)	792
PceI	AGGCCT	1 cut(s)	76
PciI	ACATGT	1 cut(s)	2050
PciSI	GCTCTTC	1 cut(s)	951
PctI	GAATGC	1 cut(s)	1563
PdiI	GCCGGC	1 cut(s)	1054
PdmI	GAANNNNTTC	2 cut(s)	709, 1401
PfeI	GAWTC	7 cut(s)	265, 325, 662, 1229, 1904, 1981, 2039
PinAI	ACCGGT	1 cut(s)	1526
PkrI	GCNGC	2 cut(s)	139, 231
PleI	GAGTC	4 cut(s)	17, 226, 944, 1909
PpsI	GAGTC	4 cut(s)	17, 226, 944, 1909
Ppu21I	YACGTR	1 cut(s)	2024
PpuMI	RGGWCCY	1 cut(s)	1749
PscI	ACATGT	1 cut(s)	2050
PshBI	ATTAAT	1 cut(s)	567
PsiI	TTATAA	1 cut(s)	1943
Psp5II	RGGWCCY	1 cut(s)	1749
PspEI	GGTNACC	1 cut(s)	352
PspFI	CCCAGC	1 cut(s)	1511
PspN4I	GGNNCC	2 cut(s)	1258, 1758
PspPI	GGNCC	4 cut(s)	167, 1442, 1643, 1749
PspPPI	RGGWCCY	1 cut(s)	1749
PstNI	CAGNNNCTG	1 cut(s)	1885
PsuI	RGATCY	2 cut(s)	1378, 1756
PvuII	CAGCTG	1 cut(s)	1989
RsaI	GTAC	5 cut(s)	678, 835, 1274, 1525, 1873
RsaNI	GTAC	5 cut(s)	677, 834, 1273, 1524, 1872
RseI	CAYNNNNRTG	1 cut(s)	1638
SalI	GTCGAC	1 cut(s)	587
SapI	GCTCTTC	1 cut(s)	951
SaqAI	TTAA	5 cut(s)	567, 1167, 1473, 1491, 1719
SatI	GCNGC	2 cut(s)	138, 230
Sau3AI	GATC	6 cut(s)	769, 1000, 1087, 1378, 1756, 2115
Sau96I	GGNCC	4 cut(s)	167, 1442, 1643, 1749
SchI	GAGTC	4 cut(s)	17, 227, 945, 1909
SduI	GDGCHC	2 cut(s)	843, 963
SfaNI	GCATC	5 cut(s)	478, 586, 640, 1141, 1852
SfcI	CTRYAG	1 cut(s)	369
SfuI	TTCGAA	2 cut(s)	380, 874
SinI	GGWCC	3 cut(s)	167, 1643, 1749
SmiMI	CAYNNNNRTG	1 cut(s)	1638
SmlI	CTYRAG	2 cut(s)	637, 1472
SmoI	CTYRAG	2 cut(s)	637, 1472
SseBI	AGGCCT	1 cut(s)	76
SsiI	CCGC	4 cut(s)	230, 440, 455, 2066
SspMI	CTAG	4 cut(s)	57, 417, 1112, 1467
StuI	AGGCCT	1 cut(s)	76
StyI	CCWWGG	3 cut(s)	130, 1039, 1687
TaaI	ACNGT	8 cut(s)	11, 273, 838, 947, 1211, 1315, 1841, 1856
TaiI	ACGT	1 cut(s)	2026
TaqI	TCGA	7 cut(s)	122, 234, 380, 404, 588, 752, 874
TaqII	GACCGA	1 cut(s)	2151
TatI	WGTACW	2 cut(s)	676, 1272
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	7 cut(s)	265, 325, 662, 1229, 1904, 1981, 2039
Tru1I	TTAA	5 cut(s)	567, 1167, 1473, 1491, 1719
Tru9I	TTAA	5 cut(s)	567, 1167, 1473, 1491, 1719
TscAI	CASTG	2 cut(s)	843, 1890
TseI	GCWGC	1 cut(s)	137
TspGWI	ACGGA	1 cut(s)	1754
TspRI	CASTG	2 cut(s)	843, 1890
Vha464I	CTTAAG	1 cut(s)	1472
VpaK11BI	GGWCC	3 cut(s)	167, 1643, 1749
VspI	ATTAAT	1 cut(s)	567
XapI	RAATTY	3 cut(s)	313, 527, 1701
XceI	RCATGY	1 cut(s)	2054
XcmI	CCANNNNNNNNNTGG	2 cut(s)	827, 2004
XmiI	GTMKAC	2 cut(s)	253, 588
XmnI	GAANNNNTTC	2 cut(s)	709, 1401
XspI	CTAG	4 cut(s)	57, 417, 1112, 1467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.