Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0010169

Physical Location & Seq

Genomic Coordinates Reverse (-)

17778780 .. 17783537

Gene Structure 4758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1112200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2115 bp

ATGGAACAAAGTTTAGGTCAAGAGTCCGTTCCTGGTTTTGGATCATTTGACAAGTCTAAGGTTTTAGATGTAAGGCCTTTGAGGCGTCTTGTTCCATTGTTCCCGTCAGCTTCTAATAATTCTTCATTTTCAACTCCACAAGGTGCTGCTCCTTTTGTTTGTGTTTCTCCTGCTGGCCCTTTCCCACCTGAGGTTGCCCCGTTTTTTCCCTTCTTCATTTCTCCGGAGTCGCAAAGGCCACTAGAACAAAATCTGCAAACACCAATATCAAATGCAGTCCCAATTAATTCATATAGGACGCCTCCATCCGCAGAAGCTAATGGAGATACTAGGACCGCAAGAAGGCTTAATCGAAGTCGTGGTCAACCACAATCCCAAAGTGGGAATGCAGAGGAAGATGGTTTGGATGGAGAAAATACAAGGAAGGCGGGGAGGCCAAGGAGTAAGTTCCGGTCTCAGAAGAGGACAAGGGGTGGCCAGGACATTAATGTTGCTTTGCCTGATGTTGACATTGATGCAATAATTGATAATGTTCTTGCAACATTTACCAATACATTCCAACAAACTGATGGTGACAGGGAATTGGTTGGATATGCACTCACGTCTTATGACTTGGTGCGAAGAAGGATTACACAAGTTGAAGAGATGAAGGAAAGAATACCAGGAGCCCCAAGAACAGGACGCCCCGATCTAAGGGCAGGAACACTCTTCATGAATAAGGGAATTAGGACAAATGCCAAGAGGAGGATTGGTGCAGTGCCTGGTGTTGAAGTCGGGGATATCTACTTTTTCCGAATGGAATTGTGCTTGATTGGGTTACATGCTCCAACGATGGGTGGAATTGATTACCTGGGAGTCAAGAACAGTACAGAGGAAGAGCCTTTAGCATTGAGCATTGTTTCTTCTGGAGGATATGAGGATTCTGTGGAGGATTCGAATGTGTTGATATACAGTGGCCAAGGTGGTAATGCTAGCAATGATTTCAGGAGGGGTAAGGAACTGAAGGATCAGAAGCTTGAAAGGGGTAATCTCGCTTTGGAGAAAAGCTTGCACCGGGGTAATGATGTCAGAGTAATTCGAGGTTTAAAGGATGTATCTAATCCAACTGGGAAGGTATATGTCTATGATGGTCTATATAAAATTCACGAATCATGGGTGGACAAAGGGAACAGTGGTTGCAATGTTTTTAAGTATAAATTGGTAAGGTTACCTGGCCAGCCTGAAGCATTTACCATTTGGAAATCAATTGAACAGTGGAAAGAAGAAACTACTACTACAAGAGTTGGACTTATATTGCCTGACCTTACTTCAGGAGCTGAAAATTTACCTGTTTCTCTGGTAAATGATGTTGATGGCGAGAAAGGCCCTGCACACTTCACATATGTTTCTAGCCTGCAGTATTCTAAACCGGTGAATCTTACAGAACCTACTGATGGATGTCTCTGTATTGGTGGGTGTCTCCCTGGTAACTCCAATTGCTCATGCATTAAGAAAAATGGAGATTTTCTCCCGTATACTGCAAGTGGGCTTCTTGTGAACCAAAAATCCTTACTTCATGAATGTGGTCCATCCTGTCAGTGCCCTCCTAATTGTCGGAATCGAGTGTCTCAAAGTGGCCTGAAAGTTCGTCTGGAGGTGTTTAAAACTAAGGATAAAGGTTGGGGTCTACGGTCACTGGATCCCATCCGCGCTGGTTCTTTCTTATGTGAATATGCAGGACAAGTTCTTAATATTTCTGGGGTAGAAGAAATGGGGAGTGATTATGAAGACGATTACATTTTCGATGCTACTCATACCTGTCAACCACTCGGAGTTTTGCCTGGTGATTCTAAGGAGACTTCAAAGGCCCCATTTCCTCTTATTATAAGTGCAAATACTGCTGGAAATGTTGCTCGTTTTATGAATCATAGCTGTTCTCCAAACATACTTTGGCAGCCAGTTTTACGAGAAACTAAAAATGAGGCTGACCTCCATATTGCGTTTTATGCGGTTGGACACATTCCTCCTATGACGGAGTTGACATATGATTATGGGGTGGTCCCTCAAGAGAAAGCATACCATAGGAAGAAAGTGTGCCTTTGCGGGTCAATAAAGTGCAGAAGCTTCTTTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00260 ko00310 ko01100 ko04146 ko04211 map00260 map00310 map01100 map04146 map04211

Pfam Domains

Protein Families

AT_hook Pre-SET SAD_SRA SET

Protein Analysis

705

Amino Acids

77.4

Weight (kDa)

7.77

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAD_SRA	PF02182	249 - 406	3e-53	SAD/SRA domain
Pre-SET	PF05033	437 - 534	2e-22	Pre-SET motif
SET	PF00856	553 - 678	4.5e-18	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05900
fragaria_vesca	FvH4_7g07980
malus_domestica	MD00G1068300.v1.1 MD12G1112200.v1.1 MD14G1101300.v1.1
prunus_persica	Prupe.7G021100_v2.0.a1 Prupe.7G021100_v2.0.a1
pyrus_communis	pycom12g09140 pycom14g08780
rosa_chinensis	RchiOBHm_Chr3g0494321 RchiOBHm_Chr3g0494471
rosa_laevigata	RLG00000022673
rosa_multiflora	Rmu_sc0000152.1_g000010
rosa_roxburghii	Rroxscaffold_6G00391110
rosa_rugosa	Rorug03G0265400
rosa_samantha	Rh3AG314800 Rh3AG315600 Rh3BG350800 Rh3CG347500 Rh3DG350100
rosa_wichuraiana	Rw3G027550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1865
AccI	GTMKAC	2 cut(s)	1514, 1666
AccII	CGCG	1 cut(s)	1689
AccIII	TCCGGA	1 cut(s)	223
AciI	CCGC	6 cut(s)	309, 336, 428, 1687, 1988, 2082
AclWI	GGATC	4 cut(s)	49, 1014, 1673, 1686
AcoI	YGGCCR	3 cut(s)	475, 955, 1213
AcsI	RAATTY	2 cut(s)	1140, 1321
AcuI	CTGAAG	3 cut(s)	1022, 1242, 1293
AcyI	GRCGYC	3 cut(s)	85, 299, 682
AdeI	CACNNNGTG	1 cut(s)	143
AfaI	GTAC	1 cut(s)	868
AfiI	CCNNNNNNNGG	9 cut(s)	38, 190, 342, 381, 677, 693, 744, 833, 1433
AgeI	ACCGGT	1 cut(s)	1408
AgsI	TTSAA	6 cut(s)	132, 641, 770, 1019, 1250, 1842
AjiI	CACGTC	1 cut(s)	603
AjnI	CCWGG	8 cut(s)	31, 477, 661, 760, 849, 1210, 1462, 1819
AloI	GAACNNNNNNTCC	2 cut(s)	1529, 1561
AluBI	AGCT	7 cut(s)	110, 317, 1015, 1047, 1316, 1911, 2103
AluI	AGCT	7 cut(s)	110, 317, 1015, 1047, 1316, 1911, 2103
Alw26I	GTCTC	5 cut(s)	459, 1445, 1463, 1611, 1829
AlwI	GGATC	4 cut(s)	49, 1014, 1673, 1686
AlwNI	CAGNNNCTG	2 cut(s)	761, 1316
Aor13HI	TCCGGA	1 cut(s)	223
ApeKI	GCWGC	2 cut(s)	146, 1933
ApoI	RAATTY	2 cut(s)	1140, 1321
ArsI	GACNNNNNNTTYG	3 cut(s)	33, 346, 378
AseI	ATTAAT	2 cut(s)	285, 486
AsiGI	ACCGGT	1 cut(s)	1408
AspLEI	GCGC	1 cut(s)	1691
AspS9I	GGNCC	6 cut(s)	176, 333, 1364, 1565, 1846, 2038
AsuC2I	CCSGG	1 cut(s)	1055
AsuHPI	GGTGA	3 cut(s)	584, 1423, 1835
AsuII	TTCGAA	1 cut(s)	935
AsuNHI	GCTAGC	1 cut(s)	971
AvaII	GGWCC	3 cut(s)	333, 1565, 2038
AxyI	CCTNAGG	1 cut(s)	189
BaeGI	GKGCMC	1 cut(s)	1583
BalI	TGGCCA	3 cut(s)	477, 957, 1215
BamHI	GGATCC	1 cut(s)	1678
BanII	GRGCYC	1 cut(s)	670
BarI	GAAGNNNNNNTAC	2 cut(s)	613, 645
BbsI	GAAGAC	1 cut(s)	1773
BbvI	GCAGC	2 cut(s)	133, 1945
BciT130I	CCWGG	8 cut(s)	33, 479, 663, 762, 851, 1212, 1464, 1821
BcnI	CCSGG	1 cut(s)	1055
BcoDI	GTCTC	5 cut(s)	459, 1445, 1463, 1611, 1829
BfaI	CTAG	4 cut(s)	242, 330, 972, 1389
BfmI	CTRYAG	1 cut(s)	1394
BglI	GCCNNNNNGGC	1 cut(s)	82
BisI	GCNGC	2 cut(s)	147, 1934
BlsI	GCNGC	2 cut(s)	148, 1935
Bme1390I	CCNGG	9 cut(s)	33, 479, 663, 762, 851, 1055, 1212, 1464, 1821
Bme18I	GGWCC	3 cut(s)	333, 1565, 2038
BmgBI	CACGTC	1 cut(s)	603
BmgT120I	GGNCC	6 cut(s)	176, 333, 1364, 1565, 1846, 2038
BmiI	GGNNCC	4 cut(s)	667, 1680, 1848, 2040
BmrFI	CCNGG	9 cut(s)	33, 479, 663, 762, 851, 1055, 1212, 1464, 1821
BmrI	ACTGGG	1 cut(s)	1116
BmsI	GCATC	2 cut(s)	505, 1774
BmtI	GCTAGC	1 cut(s)	975
BmuI	ACTGGG	1 cut(s)	1116
BpiI	GAAGAC	1 cut(s)	1773
BplI	GAGNNNNNCTC	2 cut(s)	1491, 1523
BpmI	CTGGAG	2 cut(s)	927, 1652
Bpu14I	TTCGAA	1 cut(s)	935
BpuEI	CTTGAG	1 cut(s)	2028
BpuMI	CCSGG	1 cut(s)	1055
BsaHI	GRCGYC	3 cut(s)	85, 299, 682
BsaI	GGTCTC	1 cut(s)	459
BsaJI	CCNNGG	5 cut(s)	437, 850, 958, 1054, 1462
BsaWI	WCCGGW	3 cut(s)	223, 450, 1408
BsaXI	ACNNNNNCTCC	2 cut(s)	736, 766
Bsc4I	CCNNNNNNNGG	9 cut(s)	38, 190, 342, 381, 677, 693, 744, 833, 1433
Bse118I	RCCGGY	1 cut(s)	1408
Bse1I	ACTGG	3 cut(s)	1111, 1680, 1937
Bse21I	CCTNAGG	1 cut(s)	189
Bse3DI	GCAATG	2 cut(s)	982, 1186
BseAI	TCCGGA	1 cut(s)	223
BseBI	CCWGG	8 cut(s)	33, 479, 663, 762, 851, 1212, 1464, 1821
BseDI	CCNNGG	5 cut(s)	437, 850, 958, 1054, 1462
BseGI	GGATG	6 cut(s)	305, 412, 1096, 1442, 1568, 1683
BseLI	CCNNNNNNNGG	9 cut(s)	38, 190, 342, 381, 677, 693, 744, 833, 1433
BseMI	GCAATG	2 cut(s)	982, 1186
BseMII	CTCAG	2 cut(s)	180, 470
BseNI	ACTGG	3 cut(s)	1111, 1680, 1937
BseRI	GAGGAG	1 cut(s)	757
BseSI	GKGCMC	1 cut(s)	1583
BseXI	GCAGC	2 cut(s)	133, 1945
BsgI	GTGCAG	2 cut(s)	774, 1353
Bsh1236I	CGCG	1 cut(s)	1689
BshTI	ACCGGT	1 cut(s)	1408
BsiSI	CCGG	4 cut(s)	224, 451, 1054, 1409
BslFI	GGGAC	2 cut(s)	263, 2024
BslI	CCNNNNNNNGG	9 cut(s)	38, 190, 342, 381, 677, 693, 744, 833, 1433
BsmAI	GTCTC	5 cut(s)	459, 1445, 1463, 1611, 1829
BsmFI	GGGAC	2 cut(s)	263, 2024
BsmI	GAATGC	1 cut(s)	391
Bso31I	GGTCTC	1 cut(s)	459
Bsp119I	TTCGAA	1 cut(s)	935
Bsp1286I	GDGCHC	2 cut(s)	670, 1583
Bsp13I	TCCGGA	1 cut(s)	223
Bsp143I	GATC	4 cut(s)	41, 688, 1006, 1678
BspACI	CCGC	6 cut(s)	309, 336, 428, 1687, 1988, 2082
BspCNI	CTCAG	2 cut(s)	181, 469
BspEI	TCCGGA	1 cut(s)	223
BspFNI	CGCG	1 cut(s)	1689
BspHI	TCATGA	2 cut(s)	711, 1555
BspLI	GGNNCC	4 cut(s)	667, 1680, 1848, 2040
BspMAI	CTGCAG	1 cut(s)	1398
BspOI	GCTAGC	1 cut(s)	975
BspPI	GGATC	4 cut(s)	49, 1014, 1673, 1686
BspQI	GCTCTTC	1 cut(s)	870
BspT104I	TTCGAA	1 cut(s)	935
BspTNI	GGTCTC	1 cut(s)	459
BsrDI	GCAATG	2 cut(s)	982, 1186
BsrFI	RCCGGY	1 cut(s)	1408
BsrI	ACTGG	3 cut(s)	1111, 1680, 1937
BssAI	RCCGGY	1 cut(s)	1408
BssECI	CCNNGG	5 cut(s)	437, 850, 958, 1054, 1462
BssMI	GATC	4 cut(s)	41, 688, 1006, 1678
BssNAI	GTATAC	1 cut(s)	1515
BssNI	GRCGYC	3 cut(s)	85, 299, 682
BssT1I	CCWWGG	2 cut(s)	437, 958
Bst1107I	GTATAC	1 cut(s)	1515
Bst2UI	CCWGG	8 cut(s)	33, 479, 663, 762, 851, 1212, 1464, 1821
Bst4CI	ACNGT	5 cut(s)	866, 953, 1172, 1254, 1671
Bst6I	CTCTTC	4 cut(s)	455, 636, 713, 870
BstACI	GRCGYC	3 cut(s)	85, 299, 682
BstAPI	GCANNNNNTGC	1 cut(s)	1877
BstBI	TTCGAA	1 cut(s)	935
BstC8I	GCNNGC	5 cut(s)	175, 973, 1049, 1217, 1394
BstDEI	CTNAG	6 cut(s)	57, 189, 456, 692, 1647, 1830
BstEII	GGTNACC	1 cut(s)	1206
BstF5I	GGATG	6 cut(s)	305, 412, 1096, 1442, 1568, 1683
BstFNI	CGCG	1 cut(s)	1689
BstHHI	GCGC	1 cut(s)	1691
BstKTI	GATC	4 cut(s)	44, 691, 1009, 1681
BstMAI	GTCTC	5 cut(s)	459, 1445, 1463, 1611, 1829
BstMBI	GATC	4 cut(s)	41, 688, 1006, 1678
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 1362, 1877, 1985
BstNI	CCWGG	8 cut(s)	33, 479, 663, 762, 851, 1212, 1464, 1821
BstNSI	RCATGY	1 cut(s)	824
BstPI	GGTNACC	1 cut(s)	1206
BstSCI	CCNGG	9 cut(s)	31, 477, 661, 760, 849, 1053, 1210, 1462, 1819
BstSFI	CTRYAG	1 cut(s)	1394
BstSLI	GKGCMC	1 cut(s)	1583
BstUI	CGCG	1 cut(s)	1689
BstV1I	GCAGC	2 cut(s)	133, 1945
BstV2I	GAAGAC	1 cut(s)	1773
BstX2I	RGATCY	1 cut(s)	1678
BstYI	RGATCY	1 cut(s)	1678
BstZ17I	GTATAC	1 cut(s)	1515
Bsu36I	CCTNAGG	1 cut(s)	189
BtrI	CACGTC	1 cut(s)	603
BtsCI	GGATG	6 cut(s)	305, 412, 1096, 1442, 1568, 1683
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	6 cut(s)	762, 958, 1177, 1259, 1583, 1673
Cac8I	GCNNGC	5 cut(s)	175, 973, 1049, 1217, 1394
CaiI	CAGNNNCTG	2 cut(s)	761, 1316
CciI	TCATGA	2 cut(s)	711, 1555
CfoI	GCGC	1 cut(s)	1691
Cfr10I	RCCGGY	1 cut(s)	1408
Cfr13I	GGNCC	6 cut(s)	176, 333, 1364, 1565, 1846, 2038
CseI	GACGC	3 cut(s)	74, 307, 690
Csp6I	GTAC	1 cut(s)	867
CspAI	ACCGGT	1 cut(s)	1408
CviAII	CATG	5 cut(s)	712, 821, 1152, 1482, 1556
CviQI	GTAC	1 cut(s)	867
DdeI	CTNAG	6 cut(s)	57, 189, 456, 692, 1647, 1830
DpnI	GATC	4 cut(s)	43, 690, 1008, 1680
DpnII	GATC	4 cut(s)	41, 688, 1006, 1678
DraI	TTTAAA	2 cut(s)	1086, 1642
DraIII	CACNNNGTG	1 cut(s)	143
EaeI	YGGCCR	3 cut(s)	475, 955, 1213
Eam1104I	CTCTTC	4 cut(s)	455, 636, 713, 870
EarI	CTCTTC	4 cut(s)	455, 636, 713, 870
Eco130I	CCWWGG	2 cut(s)	437, 958
Eco147I	AGGCCT	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	670
Eco31I	GGTCTC	1 cut(s)	459
Eco32I	GATATC	1 cut(s)	781
Eco47I	GGWCC	3 cut(s)	333, 1565, 2038
Eco57I	CTGAAG	3 cut(s)	1022, 1242, 1293
Eco81I	CCTNAGG	1 cut(s)	189
Eco91I	GGTNACC	1 cut(s)	1206
EcoO109I	RGGNCCY	2 cut(s)	1364, 1846
EcoO65I	GGTNACC	1 cut(s)	1206
EcoRII	CCWGG	8 cut(s)	31, 477, 661, 760, 849, 1210, 1462, 1819
EcoRV	GATATC	1 cut(s)	781
EcoT14I	CCWWGG	2 cut(s)	437, 958
EcoT22I	ATGCAT	1 cut(s)	1487
EcoT38I	GRGCYC	1 cut(s)	670
ErhI	CCWWGG	2 cut(s)	437, 958
FaeI	CATG	5 cut(s)	715, 824, 1155, 1485, 1559
FalI	AAGNNNNNCTT	2 cut(s)	2061, 2093
FaqI	GGGAC	2 cut(s)	263, 2024
FatI	CATG	5 cut(s)	711, 820, 1151, 1481, 1555
FauI	CCCGC	2 cut(s)	421, 2075
FauNDI	CATATG	2 cut(s)	1381, 2023
FblI	GTMKAC	2 cut(s)	1514, 1666
Fnu4HI	GCNGC	2 cut(s)	147, 1934
FokI	GGATG	6 cut(s)	292, 419, 1103, 1449, 1555, 1670
FriOI	GRGCYC	1 cut(s)	670
Fsp4HI	GCNGC	2 cut(s)	147, 1934
FspBI	CTAG	4 cut(s)	242, 330, 972, 1389
GlaI	GCGC	1 cut(s)	1690
GluI	GCNGC	2 cut(s)	147, 1934
GsuI	CTGGAG	2 cut(s)	927, 1652
HapII	CCGG	4 cut(s)	224, 451, 1054, 1409
HgaI	GACGC	3 cut(s)	74, 307, 690
HhaI	GCGC	1 cut(s)	1691
Hin1I	GRCGYC	3 cut(s)	85, 299, 682
Hin1II	CATG	5 cut(s)	715, 824, 1155, 1485, 1559
Hin6I	GCGC	1 cut(s)	1689
HinP1I	GCGC	1 cut(s)	1689
HincII	GTYRAC	4 cut(s)	365, 508, 1802, 2019
HindII	GTYRAC	4 cut(s)	365, 508, 1802, 2019
HindIII	AAGCTT	3 cut(s)	1013, 1045, 2101
HpaII	CCGG	4 cut(s)	224, 451, 1054, 1409
HphI	GGTGA	3 cut(s)	584, 1423, 1835
Hpy166II	GTNNAC	8 cut(s)	365, 508, 1159, 1515, 1537, 1667, 1802, 2019
Hpy188I	TCNGA	6 cut(s)	459, 794, 1011, 1070, 1596, 1811
Hpy8I	GTNNAC	8 cut(s)	365, 508, 1159, 1515, 1537, 1667, 1802, 2019
HpyAV	CCTTC	7 cut(s)	220, 336, 418, 618, 643, 997, 1105
HpyCH4III	ACNGT	5 cut(s)	866, 953, 1172, 1254, 1671
HpyCH4IV	ACGT	1 cut(s)	602
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 1362, 1877, 1985
HpyF3I	CTNAG	6 cut(s)	57, 189, 456, 692, 1647, 1830
HpySE526I	ACGT	1 cut(s)	602
Hsp92I	GRCGYC	3 cut(s)	85, 299, 682
Hsp92II	CATG	5 cut(s)	715, 824, 1155, 1485, 1559
HspAI	GCGC	1 cut(s)	1689
Kpn2I	TCCGGA	1 cut(s)	223
Kzo9I	GATC	4 cut(s)	41, 688, 1006, 1678
LguI	GCTCTTC	1 cut(s)	870
LmnI	GCTCC	4 cut(s)	154, 665, 829, 1313
Lsp1109I	GCAGC	2 cut(s)	133, 1945
LweI	GCATC	2 cut(s)	505, 1774
MaeI	CTAG	4 cut(s)	242, 330, 972, 1389
MaeII	ACGT	1 cut(s)	602
MaeIII	GTNAC	5 cut(s)	572, 816, 1206, 1466, 1671
MalI	GATC	4 cut(s)	43, 690, 1008, 1680
MboI	GATC	4 cut(s)	41, 688, 1006, 1678
MfeI	CAATTG	2 cut(s)	1245, 1474
MflI	RGATCY	1 cut(s)	1678
MhlI	GDGCHC	2 cut(s)	670, 1583
MlsI	TGGCCA	3 cut(s)	477, 957, 1215
MluNI	TGGCCA	3 cut(s)	477, 957, 1215
MlyI	GAGTC	3 cut(s)	32, 236, 864
MmeI	TCCRAC	7 cut(s)	568, 583, 851, 1127, 1264, 1574, 1972
Mox20I	TGGCCA	3 cut(s)	477, 957, 1215
Mph1103I	ATGCAT	1 cut(s)	1487
MroI	TCCGGA	1 cut(s)	223
MscI	TGGCCA	3 cut(s)	477, 957, 1215
MseI	TTAA	8 cut(s)	285, 348, 486, 1085, 1188, 1488, 1641, 1728
MslI	CAYNNNNRTG	1 cut(s)	1560
Msp20I	TGGCCA	3 cut(s)	477, 957, 1215
MspI	CCGG	4 cut(s)	224, 451, 1054, 1409
MspR9I	CCNGG	9 cut(s)	33, 479, 663, 762, 851, 1055, 1212, 1464, 1821
MunI	CAATTG	2 cut(s)	1245, 1474
Mva1269I	GAATGC	1 cut(s)	391
MvaI	CCWGG	8 cut(s)	33, 479, 663, 762, 851, 1212, 1464, 1821
MvnI	CGCG	1 cut(s)	1689
MwoI	GCNNNNNNNGC	4 cut(s)	82, 1362, 1877, 1985
NciI	CCSGG	1 cut(s)	1055
NdeI	CATATG	2 cut(s)	1381, 2023
NdeII	GATC	4 cut(s)	41, 688, 1006, 1678
NheI	GCTAGC	1 cut(s)	971
NlaIII	CATG	5 cut(s)	715, 824, 1155, 1485, 1559
NlaIV	GGNNCC	4 cut(s)	667, 1680, 1848, 2040
NmuCI	GTSAC	2 cut(s)	572, 1671
NsiI	ATGCAT	1 cut(s)	1487
NspI	RCATGY	1 cut(s)	824
NspV	TTCGAA	1 cut(s)	935
PagI	TCATGA	2 cut(s)	711, 1555
PceI	AGGCCT	1 cut(s)	76
PciSI	GCTCTTC	1 cut(s)	870
PctI	GAATGC	1 cut(s)	391
PfeI	GAWTC	7 cut(s)	920, 932, 1148, 1414, 1597, 1826, 1903
PinAI	ACCGGT	1 cut(s)	1408
PkrI	GCNGC	2 cut(s)	148, 1935
PleI	GAGTC	3 cut(s)	31, 235, 863
PpsI	GAGTC	3 cut(s)	31, 235, 863
PshBI	ATTAAT	2 cut(s)	285, 486
PsiI	TTATAA	1 cut(s)	1865
Psp6I	CCWGG	8 cut(s)	31, 477, 661, 760, 849, 1210, 1462, 1819
PspEI	GGTNACC	1 cut(s)	1206
PspGI	CCWGG	8 cut(s)	31, 477, 661, 760, 849, 1210, 1462, 1819
PspN4I	GGNNCC	4 cut(s)	667, 1680, 1848, 2040
PspPI	GGNCC	6 cut(s)	176, 333, 1364, 1565, 1846, 2038
PstI	CTGCAG	1 cut(s)	1398
PstNI	CAGNNNCTG	2 cut(s)	761, 1316
PsuI	RGATCY	1 cut(s)	1678
RsaI	GTAC	1 cut(s)	868
RsaNI	GTAC	1 cut(s)	867
RseI	CAYNNNNRTG	1 cut(s)	1560
SapI	GCTCTTC	1 cut(s)	870
SaqAI	TTAA	8 cut(s)	285, 348, 486, 1085, 1188, 1488, 1641, 1728
SatI	GCNGC	2 cut(s)	147, 1934
Sau3AI	GATC	4 cut(s)	41, 688, 1006, 1678
Sau96I	GGNCC	6 cut(s)	176, 333, 1364, 1565, 1846, 2038
SchI	GAGTC	3 cut(s)	32, 236, 864
ScrFI	CCNGG	9 cut(s)	33, 479, 663, 762, 851, 1055, 1212, 1464, 1821
SduI	GDGCHC	2 cut(s)	670, 1583
SfaNI	GCATC	2 cut(s)	505, 1774
SfcI	CTRYAG	1 cut(s)	1394
SfuI	TTCGAA	1 cut(s)	935
SinI	GGWCC	3 cut(s)	333, 1565, 2038
SmiMI	CAYNNNNRTG	1 cut(s)	1560
SmlI	CTYRAG	1 cut(s)	2043
SmoI	CTYRAG	1 cut(s)	2043
SseBI	AGGCCT	1 cut(s)	76
SsiI	CCGC	6 cut(s)	309, 336, 428, 1687, 1988, 2082
SspI	AATATT	1 cut(s)	1732
SspMI	CTAG	4 cut(s)	242, 330, 972, 1389
StuI	AGGCCT	1 cut(s)	76
StyD4I	CCNGG	9 cut(s)	31, 477, 661, 760, 849, 1053, 1210, 1462, 1819
StyI	CCWWGG	2 cut(s)	437, 958
TaaI	ACNGT	5 cut(s)	866, 953, 1172, 1254, 1671
TaiI	ACGT	1 cut(s)	605
TaqI	TCGA	5 cut(s)	352, 935, 1078, 1600, 1782
TatI	WGTACW	1 cut(s)	866
TfiI	GAWTC	7 cut(s)	920, 932, 1148, 1414, 1597, 1826, 1903
Tru1I	TTAA	8 cut(s)	285, 348, 486, 1085, 1188, 1488, 1641, 1728
Tru9I	TTAA	8 cut(s)	285, 348, 486, 1085, 1188, 1488, 1641, 1728
TscAI	CASTG	6 cut(s)	762, 958, 1177, 1259, 1583, 1680
TseFI	GTSAC	2 cut(s)	572, 1671
TseI	GCWGC	2 cut(s)	146, 1933
Tsp45I	GTSAC	2 cut(s)	572, 1671
TspGWI	ACGGA	2 cut(s)	16, 2027
TspRI	CASTG	6 cut(s)	762, 958, 1177, 1259, 1583, 1680
VpaK11BI	GGWCC	3 cut(s)	333, 1565, 2038
VspI	ATTAAT	2 cut(s)	285, 486
XapI	RAATTY	2 cut(s)	1140, 1321
XceI	RCATGY	1 cut(s)	824
XcmI	CCANNNNNNNNNTGG	2 cut(s)	566, 1926
XmiI	GTMKAC	2 cut(s)	1514, 1666
XspI	CTAG	4 cut(s)	242, 330, 972, 1389
Zsp2I	ATGCAT	1 cut(s)	1487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.