histone-lysine N-methyltransferase, H3 lysine-9 specific
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G05900 |
| fragaria_vesca | FvH4_7g07980 |
| malus_domestica | MD00G1068300.v1.1 MD12G1112200.v1.1 MD14G1101300.v1.1 |
| prunus_persica | Prupe.7G021100_v2.0.a1 Prupe.7G021100_v2.0.a1 |
| pyrus_communis | pycom12g09140 pycom14g08780 |
| rosa_chinensis | RchiOBHm_Chr3g0494321 RchiOBHm_Chr3g0494471 |
| rosa_laevigata | RLG00000022673 |
| rosa_multiflora | Rmu_sc0000152.1_g000010 |
| rosa_roxburghii | Rroxscaffold_6G00391110 |
| rosa_rugosa | Rorug03G0265400 |
| rosa_samantha | Rh3AG314800 Rh3AG315600 Rh3BG350800 Rh3CG347500 Rh3DG350100 |
| rosa_wichuraiana | Rw3G027550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1958 |
| AccI | GTMKAC | 1 cut(s) | 383 |
| AciI | CCGC | 4 cut(s) | 171, 360, 1762, 2081 |
| AclWI | GGATC | 5 cut(s) | 49, 470, 1107, 1766, 1779 |
| AcoI | YGGCCR | 3 cut(s) | 568, 1048, 1306 |
| AcsI | RAATTY | 3 cut(s) | 331, 1414, 1716 |
| AcuI | CTGAAG | 3 cut(s) | 981, 1335, 1386 |
| AcyI | GRCGYC | 2 cut(s) | 85, 775 |
| AdeI | CACNNNGTG | 1 cut(s) | 266 |
| AfaI | GTAC | 3 cut(s) | 1161, 1534, 1888 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 38, 190, 385, 459, 555, 786, 837, 926, 1129 |
| AflIII | ACRYGT | 1 cut(s) | 1889 |
| AgeI | ACCGGT | 2 cut(s) | 1420, 1501 |
| AgsI | TTSAA | 8 cut(s) | 132, 301, 484, 734, 863, 1112, 1497, 1923 |
| AjnI | CCWGG | 9 cut(s) | 31, 187, 570, 754, 853, 1303, 1555, 1766, 1912 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1706, 1738 |
| AluBI | AGCT | 3 cut(s) | 110, 1108, 2004 |
| AluI | AGCT | 3 cut(s) | 110, 1108, 2004 |
| Alw21I | GWGCWC | 1 cut(s) | 442 |
| Alw26I | GTCTC | 4 cut(s) | 234, 1490, 1556, 1922 |
| AlwI | GGATC | 5 cut(s) | 49, 470, 1107, 1766, 1779 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 854 |
| AoxI | GGCC | 7 cut(s) | 74, 568, 978, 1048, 1306, 1456, 1708 |
| ApeKI | GCWGC | 3 cut(s) | 146, 2004, 2026 |
| ApoI | RAATTY | 3 cut(s) | 331, 1414, 1716 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 33 |
| AseI | ATTAAT | 1 cut(s) | 579 |
| AsiGI | ACCGGT | 2 cut(s) | 1420, 1501 |
| AspS9I | GGNCC | 5 cut(s) | 176, 1457, 1764, 1939, 2131 |
| AsuHPI | GGTGA | 4 cut(s) | 1460, 1516, 1862, 1928 |
| AsuII | TTCGAA | 1 cut(s) | 886 |
| AsuNHI | GCTAGC | 1 cut(s) | 1064 |
| AvaII | GGWCC | 4 cut(s) | 176, 1764, 1939, 2131 |
| BaeGI | GKGCMC | 1 cut(s) | 1676 |
| BalI | TGGCCA | 3 cut(s) | 570, 1050, 1308 |
| BamHI | GGATCC | 1 cut(s) | 1771 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 706, 738 |
| BauI | CACGAG | 1 cut(s) | 692 |
| BbsI | GAAGAC | 1 cut(s) | 289 |
| Bbv12I | GWGCWC | 1 cut(s) | 442 |
| BbvI | GCAGC | 3 cut(s) | 133, 1991, 2038 |
| BciT130I | CCWGG | 9 cut(s) | 33, 189, 572, 756, 855, 1305, 1557, 1768, 1914 |
| BcoDI | GTCTC | 4 cut(s) | 234, 1490, 1556, 1922 |
| BfaI | CTAG | 6 cut(s) | 57, 114, 363, 429, 1065, 1482 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 82 |
| BisI | GCNGC | 3 cut(s) | 147, 2005, 2027 |
| BlpI | GCTNAGC | 1 cut(s) | 441 |
| BlsI | GCNGC | 3 cut(s) | 148, 2006, 2028 |
| Bme1390I | CCNGG | 9 cut(s) | 33, 189, 572, 756, 855, 1305, 1557, 1768, 1914 |
| Bme18I | GGWCC | 4 cut(s) | 176, 1764, 1939, 2131 |
| BmgT120I | GGNCC | 5 cut(s) | 176, 1457, 1764, 1939, 2131 |
| BmiI | GGNNCC | 3 cut(s) | 1773, 1941, 2133 |
| BmrFI | CCNGG | 9 cut(s) | 33, 189, 572, 756, 855, 1305, 1557, 1768, 1914 |
| BmrI | ACTGGG | 2 cut(s) | 1209, 1910 |
| BmsI | GCATC | 4 cut(s) | 598, 1015, 1153, 1867 |
| BmtI | GCTAGC | 1 cut(s) | 1068 |
| BmuI | ACTGGG | 2 cut(s) | 1209, 1910 |
| BpiI | GAAGAC | 1 cut(s) | 289 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1536, 1568, 1584, 1616 |
| BpmI | CTGGAG | 1 cut(s) | 1472 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 441 |
| Bpu14I | TTCGAA | 1 cut(s) | 886 |
| BpuEI | CTTGAG | 1 cut(s) | 1003 |
| BsaAI | YACGTR | 1 cut(s) | 2039 |
| BsaHI | GRCGYC | 2 cut(s) | 85, 775 |
| BsaJI | CCNNGG | 6 cut(s) | 139, 188, 1051, 1555, 1702, 1767 |
| BsaWI | WCCGGW | 4 cut(s) | 94, 1077, 1420, 1501 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 829, 859, 1915, 1945 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 38, 190, 385, 459, 555, 786, 837, 926, 1129 |
| Bse118I | RCCGGY | 2 cut(s) | 1420, 1501 |
| Bse1I | ACTGG | 6 cut(s) | 379, 544, 1204, 1489, 1905, 2030 |
| Bse3DI | GCAATG | 2 cut(s) | 1075, 1352 |
| BseBI | CCWGG | 9 cut(s) | 33, 189, 572, 756, 855, 1305, 1557, 1768, 1914 |
| BseDI | CCNNGG | 6 cut(s) | 139, 188, 1051, 1555, 1702, 1767 |
| BseGI | GGATG | 7 cut(s) | 73, 350, 1030, 1189, 1535, 1553, 1776 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 38, 190, 385, 459, 555, 786, 837, 926, 1129 |
| BseMI | GCAATG | 2 cut(s) | 1075, 1352 |
| BseMII | CTCAG | 3 cut(s) | 455, 776, 1917 |
| BseNI | ACTGG | 6 cut(s) | 379, 544, 1204, 1489, 1905, 2030 |
| BseRI | GAGGAG | 1 cut(s) | 850 |
| BseSI | GKGCMC | 1 cut(s) | 1676 |
| BseXI | GCAGC | 3 cut(s) | 133, 1991, 2038 |
| BseYI | CCCAGC | 1 cut(s) | 1752 |
| BsgI | GTGCAG | 2 cut(s) | 867, 981 |
| BshFI | GGCC | 7 cut(s) | 76, 570, 980, 1050, 1308, 1458, 1710 |
| BshTI | ACCGGT | 2 cut(s) | 1420, 1501 |
| BsiHKAI | GWGCWC | 1 cut(s) | 442 |
| BsiSI | CCGG | 5 cut(s) | 95, 652, 1078, 1421, 1502 |
| BslFI | GGGAC | 7 cut(s) | 308, 403, 532, 786, 1684, 1925, 2117 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 38, 190, 385, 459, 555, 786, 837, 926, 1129 |
| BsmAI | GTCTC | 4 cut(s) | 234, 1490, 1556, 1922 |
| BsmFI | GGGAC | 7 cut(s) | 308, 403, 532, 786, 1684, 1925, 2117 |
| BsnI | GGCC | 7 cut(s) | 76, 570, 980, 1050, 1308, 1458, 1710 |
| Bsp119I | TTCGAA | 1 cut(s) | 886 |
| Bsp1286I | GDGCHC | 2 cut(s) | 442, 1676 |
| Bsp143I | GATC | 6 cut(s) | 41, 462, 781, 1099, 1393, 1771 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 441 |
| BspACI | CCGC | 4 cut(s) | 171, 360, 1762, 2081 |
| BspANI | GGCC | 7 cut(s) | 76, 570, 980, 1050, 1308, 1458, 1710 |
| BspCNI | CTCAG | 3 cut(s) | 454, 777, 1918 |
| BspHI | TCATGA | 2 cut(s) | 804, 2137 |
| BspLI | GGNNCC | 3 cut(s) | 1773, 1941, 2133 |
| BspOI | GCTAGC | 1 cut(s) | 1068 |
| BspPI | GGATC | 5 cut(s) | 49, 470, 1107, 1766, 1779 |
| BspT104I | TTCGAA | 1 cut(s) | 886 |
| BsrDI | GCAATG | 2 cut(s) | 1075, 1352 |
| BsrFI | RCCGGY | 2 cut(s) | 1420, 1501 |
| BsrI | ACTGG | 6 cut(s) | 379, 544, 1204, 1489, 1905, 2030 |
| BssAI | RCCGGY | 2 cut(s) | 1420, 1501 |
| BssECI | CCNNGG | 6 cut(s) | 139, 188, 1051, 1555, 1702, 1767 |
| BssMI | GATC | 6 cut(s) | 41, 462, 781, 1099, 1393, 1771 |
| BssNAI | GTATAC | 1 cut(s) | 384 |
| BssNI | GRCGYC | 2 cut(s) | 85, 775 |
| BssSI | CACGAG | 1 cut(s) | 692 |
| BssT1I | CCWWGG | 3 cut(s) | 139, 1051, 1702 |
| Bst1107I | GTATAC | 1 cut(s) | 384 |
| Bst2BI | CACGAG | 1 cut(s) | 692 |
| Bst2UI | CCWGG | 9 cut(s) | 33, 189, 572, 756, 855, 1305, 1557, 1768, 1914 |
| Bst4CI | ACNGT | 2 cut(s) | 959, 1046 |
| Bst6I | CTCTTC | 4 cut(s) | 548, 729, 806, 1256 |
| BstACI | GRCGYC | 2 cut(s) | 85, 775 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1970 |
| BstBAI | YACGTR | 1 cut(s) | 2039 |
| BstBI | TTCGAA | 1 cut(s) | 886 |
| BstC8I | GCNNGC | 3 cut(s) | 657, 1066, 1310 |
| BstDEI | CTNAG | 5 cut(s) | 441, 710, 785, 1740, 1926 |
| BstEII | GGTNACC | 3 cut(s) | 367, 1118, 1299 |
| BstF5I | GGATG | 7 cut(s) | 73, 350, 1030, 1189, 1535, 1553, 1776 |
| BstKTI | GATC | 6 cut(s) | 44, 465, 784, 1102, 1396, 1774 |
| BstMAI | GTCTC | 4 cut(s) | 234, 1490, 1556, 1922 |
| BstMBI | GATC | 6 cut(s) | 41, 462, 781, 1099, 1393, 1771 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 82, 170, 1970, 2078 |
| BstNI | CCWGG | 9 cut(s) | 33, 189, 572, 756, 855, 1305, 1557, 1768, 1914 |
| BstNSI | RCATGY | 3 cut(s) | 659, 917, 1893 |
| BstPI | GGTNACC | 3 cut(s) | 367, 1118, 1299 |
| BstSCI | CCNGG | 9 cut(s) | 31, 187, 570, 754, 853, 1303, 1555, 1766, 1912 |
| BstSLI | GKGCMC | 1 cut(s) | 1676 |
| BstV1I | GCAGC | 3 cut(s) | 133, 1991, 2038 |
| BstV2I | GAAGAC | 1 cut(s) | 289 |
| BstX2I | RGATCY | 1 cut(s) | 1771 |
| BstYI | RGATCY | 1 cut(s) | 1771 |
| BstZ17I | GTATAC | 1 cut(s) | 384 |
| BsuRI | GGCC | 7 cut(s) | 76, 570, 980, 1050, 1308, 1458, 1710 |
| BtsCI | GGATG | 7 cut(s) | 73, 350, 1030, 1189, 1535, 1553, 1776 |
| BtsI | GCAGTG | 2 cut(s) | 855, 1279 |
| BtsIMutI | CAGTG | 6 cut(s) | 855, 964, 1051, 1279, 1676, 1898 |
| Cac8I | GCNNGC | 3 cut(s) | 657, 1066, 1310 |
| CaiI | CAGNNNCTG | 1 cut(s) | 854 |
| CciI | TCATGA | 2 cut(s) | 804, 2137 |
| Cfr10I | RCCGGY | 2 cut(s) | 1420, 1501 |
| Cfr13I | GGNCC | 5 cut(s) | 176, 1457, 1764, 1939, 2131 |
| CseI | GACGC | 3 cut(s) | 74, 750, 783 |
| Csp6I | GTAC | 3 cut(s) | 1160, 1533, 1887 |
| CspAI | ACCGGT | 2 cut(s) | 1420, 1501 |
| CviAII | CATG | 9 cut(s) | 656, 805, 914, 943, 1238, 1245, 1649, 1890, 2138 |
| CviQI | GTAC | 3 cut(s) | 1160, 1533, 1887 |
| DdeI | CTNAG | 5 cut(s) | 441, 710, 785, 1740, 1926 |
| DpnI | GATC | 6 cut(s) | 43, 464, 783, 1101, 1395, 1773 |
| DpnII | GATC | 6 cut(s) | 41, 462, 781, 1099, 1393, 1771 |
| DraI | TTTAAA | 1 cut(s) | 1735 |
| DraIII | CACNNNGTG | 1 cut(s) | 266 |
| EaeI | YGGCCR | 3 cut(s) | 568, 1048, 1306 |
| Eam1104I | CTCTTC | 4 cut(s) | 548, 729, 806, 1256 |
| EarI | CTCTTC | 4 cut(s) | 548, 729, 806, 1256 |
| Eco130I | CCWWGG | 3 cut(s) | 139, 1051, 1702 |
| Eco147I | AGGCCT | 1 cut(s) | 76 |
| Eco47I | GGWCC | 4 cut(s) | 176, 1764, 1939, 2131 |
| Eco57I | CTGAAG | 3 cut(s) | 981, 1335, 1386 |
| Eco91I | GGTNACC | 3 cut(s) | 367, 1118, 1299 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1457, 1939 |
| EcoO65I | GGTNACC | 3 cut(s) | 367, 1118, 1299 |
| EcoRII | CCWGG | 9 cut(s) | 31, 187, 570, 754, 853, 1303, 1555, 1766, 1912 |
| EcoT14I | CCWWGG | 3 cut(s) | 139, 1051, 1702 |
| ErhI | CCWWGG | 3 cut(s) | 139, 1051, 1702 |
| FaeI | CATG | 9 cut(s) | 659, 808, 917, 946, 1241, 1248, 1652, 1893, 2141 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2154, 2186 |
| FaqI | GGGAC | 7 cut(s) | 308, 403, 532, 786, 1684, 1925, 2117 |
| FatI | CATG | 9 cut(s) | 655, 804, 913, 942, 1237, 1244, 1648, 1889, 2137 |
| FauI | CCCGC | 1 cut(s) | 178 |
| FauNDI | CATATG | 1 cut(s) | 2116 |
| FblI | GTMKAC | 1 cut(s) | 383 |
| Fnu4HI | GCNGC | 3 cut(s) | 147, 2005, 2027 |
| FokI | GGATG | 7 cut(s) | 80, 337, 1037, 1196, 1542, 1560, 1763 |
| Fsp4HI | GCNGC | 3 cut(s) | 147, 2005, 2027 |
| FspBI | CTAG | 6 cut(s) | 57, 114, 363, 429, 1065, 1482 |
| GluI | GCNGC | 3 cut(s) | 147, 2005, 2027 |
| GsaI | CCCAGC | 1 cut(s) | 1756 |
| GsuI | CTGGAG | 1 cut(s) | 1472 |
| HaeIII | GGCC | 7 cut(s) | 76, 570, 980, 1050, 1308, 1458, 1710 |
| HapII | CCGG | 5 cut(s) | 95, 652, 1078, 1421, 1502 |
| HgaI | GACGC | 3 cut(s) | 74, 750, 783 |
| Hin1I | GRCGYC | 2 cut(s) | 85, 775 |
| Hin1II | CATG | 9 cut(s) | 659, 808, 917, 946, 1241, 1248, 1652, 1893, 2141 |
| HincII | GTYRAC | 2 cut(s) | 1630, 2112 |
| HindII | GTYRAC | 2 cut(s) | 1630, 2112 |
| HindIII | AAGCTT | 1 cut(s) | 1106 |
| HpaI | GTTAAC | 1 cut(s) | 1630 |
| HpaII | CCGG | 5 cut(s) | 95, 652, 1078, 1421, 1502 |
| HphI | GGTGA | 4 cut(s) | 1460, 1516, 1862, 1928 |
| Hpy166II | GTNNAC | 5 cut(s) | 384, 1252, 1323, 1630, 2112 |
| Hpy188I | TCNGA | 6 cut(s) | 786, 1104, 1689, 2013, 2059, 2100 |
| Hpy188III | TCNNGA | 8 cut(s) | 20, 417, 765, 805, 952, 999, 1404, 2138 |
| Hpy8I | GTNNAC | 5 cut(s) | 384, 1252, 1323, 1630, 2112 |
| HpyAV | CCTTC | 7 cut(s) | 414, 511, 711, 736, 1090, 1198, 1686 |
| HpyCH4III | ACNGT | 2 cut(s) | 959, 1046 |
| HpyCH4IV | ACGT | 1 cut(s) | 2038 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 82, 170, 1970, 2078 |
| HpyF3I | CTNAG | 5 cut(s) | 441, 710, 785, 1740, 1926 |
| HpySE526I | ACGT | 1 cut(s) | 2038 |
| Hsp92I | GRCGYC | 2 cut(s) | 85, 775 |
| Hsp92II | CATG | 9 cut(s) | 659, 808, 917, 946, 1241, 1248, 1652, 1893, 2141 |
| KspAI | GTTAAC | 1 cut(s) | 1630 |
| Kzo9I | GATC | 6 cut(s) | 41, 462, 781, 1099, 1393, 1771 |
| LmnI | GCTCC | 4 cut(s) | 154, 758, 922, 1406 |
| Lsp1109I | GCAGC | 3 cut(s) | 133, 1991, 2038 |
| LweI | GCATC | 4 cut(s) | 598, 1015, 1153, 1867 |
| MaeI | CTAG | 6 cut(s) | 57, 114, 363, 429, 1065, 1482 |
| MaeII | ACGT | 1 cut(s) | 2038 |
| MaeIII | GTNAC | 4 cut(s) | 367, 493, 1118, 1299 |
| MalI | GATC | 6 cut(s) | 43, 464, 783, 1101, 1395, 1773 |
| MboI | GATC | 6 cut(s) | 41, 462, 781, 1099, 1393, 1771 |
| MfeI | CAATTG | 1 cut(s) | 1338 |
| MflI | RGATCY | 1 cut(s) | 1771 |
| MhlI | GDGCHC | 2 cut(s) | 442, 1676 |
| MlsI | TGGCCA | 3 cut(s) | 570, 1050, 1308 |
| MluNI | TGGCCA | 3 cut(s) | 570, 1050, 1308 |
| MlyI | GAGTC | 5 cut(s) | 17, 236, 957, 1924, 2063 |
| MmeI | TCCRAC | 7 cut(s) | 661, 886, 1220, 1357, 1590, 1667, 2065 |
| Mox20I | TGGCCA | 3 cut(s) | 570, 1050, 1308 |
| MscI | TGGCCA | 3 cut(s) | 570, 1050, 1308 |
| MseI | TTAA | 8 cut(s) | 579, 1281, 1581, 1629, 1734, 1821, 2202, 2206 |
| MslI | CAYNNNNRTG | 2 cut(s) | 660, 1653 |
| Msp20I | TGGCCA | 3 cut(s) | 570, 1050, 1308 |
| MspA1I | CMGCKG | 2 cut(s) | 173, 2004 |
| MspI | CCGG | 5 cut(s) | 95, 652, 1078, 1421, 1502 |
| MspR9I | CCNGG | 9 cut(s) | 33, 189, 572, 756, 855, 1305, 1557, 1768, 1914 |
| MunI | CAATTG | 1 cut(s) | 1338 |
| MvaI | CCWGG | 9 cut(s) | 33, 189, 572, 756, 855, 1305, 1557, 1768, 1914 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 82, 170, 1970, 2078 |
| NdeI | CATATG | 1 cut(s) | 2116 |
| NdeII | GATC | 6 cut(s) | 41, 462, 781, 1099, 1393, 1771 |
| NheI | GCTAGC | 1 cut(s) | 1064 |
| NlaIII | CATG | 9 cut(s) | 659, 808, 917, 946, 1241, 1248, 1652, 1893, 2141 |
| NlaIV | GGNNCC | 3 cut(s) | 1773, 1941, 2133 |
| NspI | RCATGY | 3 cut(s) | 659, 917, 1893 |
| NspV | TTCGAA | 1 cut(s) | 886 |
| PacI | TTAATTAA | 1 cut(s) | 2206 |
| PaeI | GCATGC | 1 cut(s) | 659 |
| PagI | TCATGA | 2 cut(s) | 804, 2137 |
| PceI | AGGCCT | 1 cut(s) | 76 |
| PciI | ACATGT | 1 cut(s) | 1889 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1168 |
| PfeI | GAWTC | 8 cut(s) | 674, 1013, 1241, 1507, 1517, 1690, 1919, 1996 |
| PinAI | ACCGGT | 2 cut(s) | 1420, 1501 |
| PkrI | GCNGC | 3 cut(s) | 148, 2006, 2028 |
| PleI | GAGTC | 5 cut(s) | 17, 235, 956, 1924, 2062 |
| PpsI | GAGTC | 5 cut(s) | 17, 235, 956, 1924, 2062 |
| Ppu21I | YACGTR | 1 cut(s) | 2039 |
| PpuMI | RGGWCCY | 1 cut(s) | 1939 |
| PscI | ACATGT | 1 cut(s) | 1889 |
| PshBI | ATTAAT | 1 cut(s) | 579 |
| PsiI | TTATAA | 1 cut(s) | 1958 |
| Psp5II | RGGWCCY | 1 cut(s) | 1939 |
| Psp6I | CCWGG | 9 cut(s) | 31, 187, 570, 754, 853, 1303, 1555, 1766, 1912 |
| PspEI | GGTNACC | 3 cut(s) | 367, 1118, 1299 |
| PspFI | CCCAGC | 1 cut(s) | 1752 |
| PspGI | CCWGG | 9 cut(s) | 31, 187, 570, 754, 853, 1303, 1555, 1766, 1912 |
| PspN4I | GGNNCC | 3 cut(s) | 1773, 1941, 2133 |
| PspPI | GGNCC | 5 cut(s) | 176, 1457, 1764, 1939, 2131 |
| PspPPI | RGGWCCY | 1 cut(s) | 1939 |
| PstNI | CAGNNNCTG | 1 cut(s) | 854 |
| PsuI | RGATCY | 1 cut(s) | 1771 |
| PvuII | CAGCTG | 1 cut(s) | 2004 |
| RsaI | GTAC | 3 cut(s) | 1161, 1534, 1888 |
| RsaNI | GTAC | 3 cut(s) | 1160, 1533, 1887 |
| RseI | CAYNNNNRTG | 2 cut(s) | 660, 1653 |
| SaqAI | TTAA | 8 cut(s) | 579, 1281, 1581, 1629, 1734, 1821, 2202, 2206 |
| SatI | GCNGC | 3 cut(s) | 147, 2005, 2027 |
| Sau3AI | GATC | 6 cut(s) | 41, 462, 781, 1099, 1393, 1771 |
| Sau96I | GGNCC | 5 cut(s) | 176, 1457, 1764, 1939, 2131 |
| SchI | GAGTC | 5 cut(s) | 17, 236, 957, 1924, 2063 |
| ScrFI | CCNGG | 9 cut(s) | 33, 189, 572, 756, 855, 1305, 1557, 1768, 1914 |
| SduI | GDGCHC | 2 cut(s) | 442, 1676 |
| SfaNI | GCATC | 4 cut(s) | 598, 1015, 1153, 1867 |
| SfuI | TTCGAA | 1 cut(s) | 886 |
| SinI | GGWCC | 4 cut(s) | 176, 1764, 1939, 2131 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 660, 1653 |
| SmlI | CTYRAG | 1 cut(s) | 982 |
| SmoI | CTYRAG | 1 cut(s) | 982 |
| SphI | GCATGC | 1 cut(s) | 659 |
| SseBI | AGGCCT | 1 cut(s) | 76 |
| SsiI | CCGC | 4 cut(s) | 171, 360, 1762, 2081 |
| SspI | AATATT | 1 cut(s) | 625 |
| SspMI | CTAG | 6 cut(s) | 57, 114, 363, 429, 1065, 1482 |
| StuI | AGGCCT | 1 cut(s) | 76 |
| StyD4I | CCNGG | 9 cut(s) | 31, 187, 570, 754, 853, 1303, 1555, 1766, 1912 |
| StyI | CCWWGG | 3 cut(s) | 139, 1051, 1702 |
| TaaI | ACNGT | 2 cut(s) | 959, 1046 |
| TaiI | ACGT | 1 cut(s) | 2041 |
| TaqI | TCGA | 3 cut(s) | 886, 1171, 1693 |
| TaqII | GACCGA | 1 cut(s) | 1137 |
| TatI | WGTACW | 1 cut(s) | 1532 |
| TfiI | GAWTC | 8 cut(s) | 674, 1013, 1241, 1507, 1517, 1690, 1919, 1996 |
| Tru1I | TTAA | 8 cut(s) | 579, 1281, 1581, 1629, 1734, 1821, 2202, 2206 |
| Tru9I | TTAA | 8 cut(s) | 579, 1281, 1581, 1629, 1734, 1821, 2202, 2206 |
| TscAI | CASTG | 6 cut(s) | 855, 964, 1051, 1279, 1676, 1905 |
| TseI | GCWGC | 3 cut(s) | 146, 2004, 2026 |
| TspGWI | ACGGA | 2 cut(s) | 1605, 1769 |
| TspRI | CASTG | 6 cut(s) | 855, 964, 1051, 1279, 1676, 1905 |
| VpaK11BI | GGWCC | 4 cut(s) | 176, 1764, 1939, 2131 |
| VspI | ATTAAT | 1 cut(s) | 579 |
| XapI | RAATTY | 3 cut(s) | 331, 1414, 1716 |
| XceI | RCATGY | 3 cut(s) | 659, 917, 1893 |
| XmiI | GTMKAC | 1 cut(s) | 383 |
| XspI | CTAG | 6 cut(s) | 57, 114, 363, 429, 1065, 1482 |