MD14G1101300.v1.1

histone-lysine N-methyltransferase, H3 lysine-9 specific

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
15606976 .. 15610694
3719 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1101300.v1.1.491

Sequence Viewer

Length: 1524 bp
ATGTTGCTTTTGCCTGATGTTGACATTGATGCAATAATTGATAATGTTCTTACAACATATACCAATACATTCCAACAAACTGATGGTGACAGGGAATCGCTTGTATATGCACTCACGTCCTATGACTTGGTGCGAAGAAGGATTACACAAATTGAAGAGATGAAGGAAAGAATACCTGGAGCCCCTAGAACAGGACGCCCCGATCTAAGGGCAGGAACACTCTTCATGAATAAGGGAATTAGGACAAATGCCAAGAAGAGGATTGGTGCAGTGCCTGGTGTTGAAGTCGGGGATATTTTCTTTTTCCGAATGGAACTCTGCTTGGTTGGGTTACATGCTCCAACTATGGGTGGAATTGATTACATGGGAGTCAAGAACAGTACAGAGGAAGAGCCTTTAGCATTGAGCATTGTTTCTTCTGGAGGATATGAGGATTCTGTGGAGGATTCGAATGTGTTGATATACAGTGGCCAAGGTGGTAATGCTAGCAACGATTTCAGGAGAGATAAGGAAATGAAGGATCAGAAGCTTGAAAGGGTAATTCGAGGTTTAAAGGATGTATCTAATCCAACTGGGAAGGTATATGTCTATGATGGTCTATATAAAATTCACGAATCATGGGTCGACAAGGGGAAGAGTGGTTGCAATGTATTTAAGTATAAATTGAAGAAAACTACTACTACTACGAGGGTTGGACTTATATTGCCTGACCTTACTTCCGGAGCTGAAAATTTACCTGTTTCCCTGGTAAATGATGTTGATGGTGAGAAAGGCCCTGCACACTTCACATATATTTCTAGCCTGCAGTATTCTAAACCGGTGAATCTTACAGAACCCTCTGATGGATGTCTCTGTATTGGTGGGTGTCTCCCTGGTAATTCCAATTGCTCTTGCATTAAGAAAAATGGAGATTTTCTCCCATATACTGCAAATGGGCTTCTTGTGAACCAAAAATCCTTACTGCATGAATGTGGTCCATCCTGTCAGTGCCCTCCTAATTGTCGGAATCGAGTGTCTCAAAGTGGCCTGAAAGTTCGTCTGGAGGTGTTTAGAACTAAGGATAAAGGTTGGGGTCTGCGGTCTTTGGATCCCATCCGCGCTGGTTCTTTGTTATGTGAATATGCAGGACAAGTTCTTACTATTTCTGGGGTAGAAGAAATGGGGGGTGATTATGAAGACGATTACATTTTCGATGCTACTCGTACCTGTCAGCCACTCGGGGTTCTGCCTGGTGATTCTACAGAGACTTCAAAGGCCCCATTTCCTCTAATTATAAGTGCAAATACTGCTGGAAATGTTGCTCGTTTTATGAATCACAGCTGTTCTCCAAATGTACTTTGGCAGCCAGTCTTAAGGGAAAACAAAAATGAGTCTGACCTCCATATTGCGTTTTACACGGTTGGACACATACCTCCTATGACAGAGTTAACATATGATTATGGGATGGTCCCTCAAGAGAAAGCATACCATAGGAAGAAAGTGTGCCTTTGCGGGTCAATAAAATGCAGAAGCTTCTTTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

508

Amino Acids

55.98

Weight (kDa)

6.48

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 87 - 225 3e-38 SAD/SRA domain
Pre-SET PF05033 240 - 337 3e-23 Pre-SET motif
SET PF00856 356 - 481 6e-18 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1274
AccI GTMKAC 1 cut(s) 624
AccII CGCG 1 cut(s) 1098
AccIII TCCGGA 1 cut(s) 719
AciI CCGC 3 cut(s) 1078, 1096, 1491
AclWI GGATC 3 cut(s) 528, 1082, 1095
AcoI YGGCCR 1 cut(s) 469
AcsI RAATTY 2 cut(s) 606, 730
AcyI GRCGYC 1 cut(s) 196
AfaI GTAC 3 cut(s) 382, 1204, 1335
AfiI CCNNNNNNNGG 5 cut(s) 191, 207, 258, 347, 842
AflII CTTAAG 1 cut(s) 1351
AgeI ACCGGT 1 cut(s) 817
AgsI TTSAA 5 cut(s) 155, 284, 533, 667, 1251
AjiI CACGTC 1 cut(s) 117
AjnI CCWGG 5 cut(s) 175, 274, 744, 871, 1228
AloI GAACNNNNNNTCC 2 cut(s) 938, 970
AluBI AGCT 4 cut(s) 529, 725, 1320, 1512
AluI AGCT 4 cut(s) 529, 725, 1320, 1512
Alw26I GTCTC 4 cut(s) 854, 872, 1020, 1238
AlwI GGATC 3 cut(s) 528, 1082, 1095
AlwNI CAGNNNCTG 1 cut(s) 275
Ama87I CYCGRG 1 cut(s) 1217
Aor13HI TCCGGA 1 cut(s) 719
AoxI GGCC 4 cut(s) 469, 772, 1024, 1254
ApeKI GCWGC 1 cut(s) 1342
ApoI RAATTY 2 cut(s) 606, 730
ArsI GACNNNNNNTTYG 2 cut(s) 606, 638
AsiGI ACCGGT 1 cut(s) 817
AspLEI GCGC 1 cut(s) 1100
AspS9I GGNCC 4 cut(s) 773, 974, 1255, 1447
AsuHPI GGTGA 5 cut(s) 98, 776, 832, 1178, 1244
AsuII TTCGAA 1 cut(s) 449
AsuNHI GCTAGC 1 cut(s) 485
AvaI CYCGRG 1 cut(s) 1217
AvaII GGWCC 2 cut(s) 974, 1447
BaeGI GKGCMC 1 cut(s) 992
BalI TGGCCA 1 cut(s) 471
BamHI GGATCC 1 cut(s) 1087
BanII GRGCYC 1 cut(s) 184
BarI GAAGNNNNNNTAC 2 cut(s) 127, 159
BbsI GAAGAC 1 cut(s) 1182
BbvI GCAGC 1 cut(s) 1354
BccI CCATC 7 cut(s) 77, 587, 755, 836, 985, 1100, 1438
BciT130I CCWGG 5 cut(s) 177, 276, 746, 873, 1230
BcoDI GTCTC 4 cut(s) 854, 872, 1020, 1238
BfaI CTAG 3 cut(s) 186, 486, 798
BfmI CTRYAG 2 cut(s) 803, 1239
BfrI CTTAAG 1 cut(s) 1351
BisI GCNGC 1 cut(s) 1343
BlsI GCNGC 1 cut(s) 1344
Bme1390I CCNGG 5 cut(s) 177, 276, 746, 873, 1230
Bme18I GGWCC 2 cut(s) 974, 1447
BmeT110I CYCGRG 1 cut(s) 1217
BmgBI CACGTC 1 cut(s) 117
BmgT120I GGNCC 4 cut(s) 773, 974, 1255, 1447
BmiI GGNNCC 4 cut(s) 181, 1089, 1257, 1449
BmrFI CCNGG 5 cut(s) 177, 276, 746, 873, 1230
BmrI ACTGGG 1 cut(s) 582
BmsI GCATC 2 cut(s) 19, 1183
BmtI GCTAGC 1 cut(s) 489
BmuI ACTGGG 1 cut(s) 582
BpiI GAAGAC 1 cut(s) 1182
BplI GAGNNNNNCTC 2 cut(s) 900, 932
BpmI CTGGAG 3 cut(s) 198, 441, 1061
Bpu14I TTCGAA 1 cut(s) 449
BpuEI CTTGAG 1 cut(s) 1437
BsaHI GRCGYC 1 cut(s) 196
BsaJI CCNNGG 3 cut(s) 472, 744, 871
BsaWI WCCGGW 2 cut(s) 719, 817
Bsc4I CCNNNNNNNGG 5 cut(s) 191, 207, 258, 347, 842
Bse118I RCCGGY 1 cut(s) 817
Bse1I ACTGG 2 cut(s) 577, 1346
Bse3DI GCAATG 1 cut(s) 652
BseAI TCCGGA 1 cut(s) 719
BseBI CCWGG 5 cut(s) 177, 276, 746, 873, 1230
BseDI CCNNGG 3 cut(s) 472, 744, 871
BseGI GGATG 5 cut(s) 562, 851, 977, 1092, 1449
BseLI CCNNNNNNNGG 5 cut(s) 191, 207, 258, 347, 842
BseMI GCAATG 1 cut(s) 652
BseNI ACTGG 2 cut(s) 577, 1346
BseSI GKGCMC 1 cut(s) 992
BseXI GCAGC 1 cut(s) 1354
BsgI GTGCAG 2 cut(s) 288, 762
Bsh1236I CGCG 1 cut(s) 1098
BshFI GGCC 4 cut(s) 471, 774, 1026, 1256
BshTI ACCGGT 1 cut(s) 817
BsiHKCI CYCGRG 1 cut(s) 1217
BsiSI CCGG 2 cut(s) 720, 818
BslFI GGGAC 1 cut(s) 1433
BslI CCNNNNNNNGG 5 cut(s) 191, 207, 258, 347, 842
BsmAI GTCTC 4 cut(s) 854, 872, 1020, 1238
BsmFI GGGAC 1 cut(s) 1433
BsnI GGCC 4 cut(s) 471, 774, 1026, 1256
BsoBI CYCGRG 1 cut(s) 1217
Bsp119I TTCGAA 1 cut(s) 449
Bsp1286I GDGCHC 2 cut(s) 184, 992
Bsp13I TCCGGA 1 cut(s) 719
Bsp143I GATC 3 cut(s) 202, 520, 1087
BspACI CCGC 3 cut(s) 1078, 1096, 1491
BspANI GGCC 4 cut(s) 471, 774, 1026, 1256
BspEI TCCGGA 1 cut(s) 719
BspFNI CGCG 1 cut(s) 1098
BspHI TCATGA 1 cut(s) 225
BspLI GGNNCC 4 cut(s) 181, 1089, 1257, 1449
BspMAI CTGCAG 1 cut(s) 807
BspOI GCTAGC 1 cut(s) 489
BspPI GGATC 3 cut(s) 528, 1082, 1095
BspQI GCTCTTC 1 cut(s) 384
BspT104I TTCGAA 1 cut(s) 449
BspTI CTTAAG 1 cut(s) 1351
BsrDI GCAATG 1 cut(s) 652
BsrFI RCCGGY 1 cut(s) 817
BsrI ACTGG 2 cut(s) 577, 1346
BssAI RCCGGY 1 cut(s) 817
BssECI CCNNGG 3 cut(s) 472, 744, 871
BssMI GATC 3 cut(s) 202, 520, 1087
BssNI GRCGYC 1 cut(s) 196
BssT1I CCWWGG 1 cut(s) 472
Bst2UI CCWGG 5 cut(s) 177, 276, 746, 873, 1230
Bst4CI ACNGT 3 cut(s) 380, 467, 1399
Bst6I CTCTTC 5 cut(s) 150, 227, 251, 384, 629
BstACI GRCGYC 1 cut(s) 196
BstAFI CTTAAG 1 cut(s) 1351
BstAPI GCANNNNNTGC 1 cut(s) 1286
BstBI TTCGAA 1 cut(s) 449
BstC8I GCNNGC 2 cut(s) 487, 803
BstDEI CTNAG 2 cut(s) 206, 1056
BstENI CCTNNNNNAGG 1 cut(s) 189
BstF5I GGATG 5 cut(s) 562, 851, 977, 1092, 1449
BstFNI CGCG 1 cut(s) 1098
BstHHI GCGC 1 cut(s) 1100
BstKTI GATC 3 cut(s) 205, 523, 1090
BstMAI GTCTC 4 cut(s) 854, 872, 1020, 1238
BstMBI GATC 3 cut(s) 202, 520, 1087
BstMWI GCNNNNNNNGC 1 cut(s) 1286
BstNI CCWGG 5 cut(s) 177, 276, 746, 873, 1230
BstNSI RCATGY 1 cut(s) 338
BstSCI CCNGG 5 cut(s) 175, 274, 744, 871, 1228
BstSFI CTRYAG 2 cut(s) 803, 1239
BstSLI GKGCMC 1 cut(s) 992
BstUI CGCG 1 cut(s) 1098
BstV1I GCAGC 1 cut(s) 1354
BstV2I GAAGAC 1 cut(s) 1182
BstX2I RGATCY 1 cut(s) 1087
BstYI RGATCY 1 cut(s) 1087
BsuRI GGCC 4 cut(s) 471, 774, 1026, 1256
BtrI CACGTC 1 cut(s) 117
BtsCI GGATG 5 cut(s) 562, 851, 977, 1092, 1449
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 3 cut(s) 276, 472, 992
Cac8I GCNNGC 2 cut(s) 487, 803
CaiI CAGNNNCTG 1 cut(s) 275
CciI TCATGA 1 cut(s) 225
CfoI GCGC 1 cut(s) 1100
Cfr10I RCCGGY 1 cut(s) 817
Cfr13I GGNCC 4 cut(s) 773, 974, 1255, 1447
CseI GACGC 1 cut(s) 204
Csp6I GTAC 3 cut(s) 381, 1203, 1334
CspAI ACCGGT 1 cut(s) 817
CviAII CATG 5 cut(s) 226, 335, 364, 618, 965
CviQI GTAC 3 cut(s) 381, 1203, 1334
DdeI CTNAG 2 cut(s) 206, 1056
DpnI GATC 3 cut(s) 204, 522, 1089
DpnII GATC 3 cut(s) 202, 520, 1087
DraI TTTAAA 1 cut(s) 552
EaeI YGGCCR 1 cut(s) 469
Eam1104I CTCTTC 5 cut(s) 150, 227, 251, 384, 629
EarI CTCTTC 5 cut(s) 150, 227, 251, 384, 629
Eco130I CCWWGG 1 cut(s) 472
Eco24I GRGCYC 1 cut(s) 184
Eco47I GGWCC 2 cut(s) 974, 1447
Eco88I CYCGRG 1 cut(s) 1217
EcoNI CCTNNNNNAGG 1 cut(s) 189
EcoO109I RGGNCCY 2 cut(s) 773, 1255
EcoRII CCWGG 5 cut(s) 175, 274, 744, 871, 1228
EcoT14I CCWWGG 1 cut(s) 472
EcoT38I GRGCYC 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 472
FaeI CATG 5 cut(s) 229, 338, 367, 621, 968
FalI AAGNNNNNCTT 2 cut(s) 1470, 1502
FaqI GGGAC 1 cut(s) 1433
FatI CATG 5 cut(s) 225, 334, 363, 617, 964
FauI CCCGC 1 cut(s) 1484
FauNDI CATATG 1 cut(s) 1432
FblI GTMKAC 1 cut(s) 624
Fnu4HI GCNGC 1 cut(s) 1343
FokI GGATG 5 cut(s) 569, 858, 964, 1079, 1456
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 1 cut(s) 1343
FspBI CTAG 3 cut(s) 186, 486, 798
GlaI GCGC 1 cut(s) 1099
GluI GCNGC 1 cut(s) 1343
GsuI CTGGAG 3 cut(s) 198, 441, 1061
HaeIII GGCC 4 cut(s) 471, 774, 1026, 1256
HapII CCGG 2 cut(s) 720, 818
HgaI GACGC 1 cut(s) 204
HhaI GCGC 1 cut(s) 1100
Hin1I GRCGYC 1 cut(s) 196
Hin1II CATG 5 cut(s) 229, 338, 367, 621, 968
Hin6I GCGC 1 cut(s) 1098
HinP1I GCGC 1 cut(s) 1098
HincII GTYRAC 3 cut(s) 22, 625, 1428
HindII GTYRAC 3 cut(s) 22, 625, 1428
HindIII AAGCTT 2 cut(s) 527, 1510
HpaI GTTAAC 1 cut(s) 1428
HpaII CCGG 2 cut(s) 720, 818
HphI GGTGA 5 cut(s) 98, 776, 832, 1178, 1244
Hpy166II GTNNAC 4 cut(s) 22, 625, 946, 1428
Hpy188I TCNGA 5 cut(s) 308, 525, 841, 1005, 1375
Hpy188III TCNNGA 8 cut(s) 226, 373, 420, 499, 611, 720, 1040, 1454
Hpy8I GTNNAC 4 cut(s) 22, 625, 946, 1428
HpyAV CCTTC 4 cut(s) 132, 157, 511, 571
HpyCH4III ACNGT 3 cut(s) 380, 467, 1399
HpyCH4IV ACGT 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 1 cut(s) 1286
HpyF3I CTNAG 2 cut(s) 206, 1056
HpySE526I ACGT 1 cut(s) 116
Hsp92I GRCGYC 1 cut(s) 196
Hsp92II CATG 5 cut(s) 229, 338, 367, 621, 968
HspAI GCGC 1 cut(s) 1098
Kpn2I TCCGGA 1 cut(s) 719
KspAI GTTAAC 1 cut(s) 1428
Kzo9I GATC 3 cut(s) 202, 520, 1087
LguI GCTCTTC 1 cut(s) 384
LmnI GCTCC 3 cut(s) 179, 343, 722
Lsp1109I GCAGC 1 cut(s) 1354
LweI GCATC 2 cut(s) 19, 1183
MaeI CTAG 3 cut(s) 186, 486, 798
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 2 cut(s) 86, 330
MalI GATC 3 cut(s) 204, 522, 1089
MboI GATC 3 cut(s) 202, 520, 1087
MfeI CAATTG 1 cut(s) 883
MflI RGATCY 1 cut(s) 1087
MhlI GDGCHC 2 cut(s) 184, 992
MlsI TGGCCA 1 cut(s) 471
MluNI TGGCCA 1 cut(s) 471
MlyI GAGTC 2 cut(s) 378, 1379
MmeI TCCRAC 6 cut(s) 97, 365, 593, 673, 983, 1381
Mox20I TGGCCA 1 cut(s) 471
MroI TCCGGA 1 cut(s) 719
MscI TGGCCA 1 cut(s) 471
MseI TTAA 5 cut(s) 551, 654, 897, 1352, 1427
MslI CAYNNNNRTG 1 cut(s) 969
Msp20I TGGCCA 1 cut(s) 471
MspA1I CMGCKG 1 cut(s) 1320
MspCI CTTAAG 1 cut(s) 1351
MspI CCGG 2 cut(s) 720, 818
MspR9I CCNGG 5 cut(s) 177, 276, 746, 873, 1230
MunI CAATTG 1 cut(s) 883
MvaI CCWGG 5 cut(s) 177, 276, 746, 873, 1230
MvnI CGCG 1 cut(s) 1098
MwoI GCNNNNNNNGC 1 cut(s) 1286
NdeI CATATG 1 cut(s) 1432
NdeII GATC 3 cut(s) 202, 520, 1087
NheI GCTAGC 1 cut(s) 485
NlaIII CATG 5 cut(s) 229, 338, 367, 621, 968
NlaIV GGNNCC 4 cut(s) 181, 1089, 1257, 1449
NmuCI GTSAC 1 cut(s) 86
NspI RCATGY 1 cut(s) 338
NspV TTCGAA 1 cut(s) 449
PagI TCATGA 1 cut(s) 225
PciSI GCTCTTC 1 cut(s) 384
PfeI GAWTC 8 cut(s) 95, 434, 446, 614, 823, 1006, 1235, 1312
PinAI ACCGGT 1 cut(s) 817
PkrI GCNGC 1 cut(s) 1344
PleI GAGTC 2 cut(s) 377, 1378
PpsI GAGTC 2 cut(s) 377, 1378
PsiI TTATAA 1 cut(s) 1274
Psp6I CCWGG 5 cut(s) 175, 274, 744, 871, 1228
PspGI CCWGG 5 cut(s) 175, 274, 744, 871, 1228
PspN4I GGNNCC 4 cut(s) 181, 1089, 1257, 1449
PspPI GGNCC 4 cut(s) 773, 974, 1255, 1447
PstI CTGCAG 1 cut(s) 807
PstNI CAGNNNCTG 1 cut(s) 275
PsuI RGATCY 1 cut(s) 1087
PvuII CAGCTG 1 cut(s) 1320
RsaI GTAC 3 cut(s) 382, 1204, 1335
RsaNI GTAC 3 cut(s) 381, 1203, 1334
RseI CAYNNNNRTG 1 cut(s) 969
SalI GTCGAC 1 cut(s) 623
SapI GCTCTTC 1 cut(s) 384
SaqAI TTAA 5 cut(s) 551, 654, 897, 1352, 1427
SatI GCNGC 1 cut(s) 1343
Sau3AI GATC 3 cut(s) 202, 520, 1087
Sau96I GGNCC 4 cut(s) 773, 974, 1255, 1447
SchI GAGTC 2 cut(s) 378, 1379
ScrFI CCNGG 5 cut(s) 177, 276, 746, 873, 1230
SduI GDGCHC 2 cut(s) 184, 992
SfaNI GCATC 2 cut(s) 19, 1183
SfcI CTRYAG 2 cut(s) 803, 1239
SfuI TTCGAA 1 cut(s) 449
SinI GGWCC 2 cut(s) 974, 1447
SmiMI CAYNNNNRTG 1 cut(s) 969
SmlI CTYRAG 2 cut(s) 1351, 1452
SmoI CTYRAG 2 cut(s) 1351, 1452
SsiI CCGC 3 cut(s) 1078, 1096, 1491
SspMI CTAG 3 cut(s) 186, 486, 798
StyD4I CCNGG 5 cut(s) 175, 274, 744, 871, 1228
StyI CCWWGG 1 cut(s) 472
TaaI ACNGT 3 cut(s) 380, 467, 1399
TaiI ACGT 1 cut(s) 119
TaqI TCGA 5 cut(s) 449, 544, 624, 1009, 1191
TatI WGTACW 2 cut(s) 380, 1333
TfiI GAWTC 8 cut(s) 95, 434, 446, 614, 823, 1006, 1235, 1312
Tru1I TTAA 5 cut(s) 551, 654, 897, 1352, 1427
Tru9I TTAA 5 cut(s) 551, 654, 897, 1352, 1427
TscAI CASTG 3 cut(s) 276, 472, 992
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 1 cut(s) 1342
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 7 cut(s) 176, 214, 242, 530, 981, 1188, 1325
TspRI CASTG 3 cut(s) 276, 472, 992
Vha464I CTTAAG 1 cut(s) 1351
VpaK11BI GGWCC 2 cut(s) 974, 1447
XagI CCTNNNNNAGG 1 cut(s) 189
XapI RAATTY 2 cut(s) 606, 730
XceI RCATGY 1 cut(s) 338
XcmI CCANNNNNNNNNTGG 2 cut(s) 80, 1335
XmiI GTMKAC 1 cut(s) 624
XspI CTAG 3 cut(s) 186, 486, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.