AT2G06000

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010083
Physical Location & Seq
Reverse (-)
2327253 .. 2329873
2621 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G06000.2

Sequence Viewer

Length: 1611 bp
ATGATTCGAACAACATTCGCGACCGCCATCGCTCATTTCCACACGCATTCTCATGGAGGAGCTCAAGCTCGTCCTCTACAGAACAACACACGAGAAGTAATCCATTGTCCTGAAGCTTGGTTAGTCAAAATCGTATCTACTTTGTTCGTGTACAGAGTTCCAGATTCAGATCTCTGTTTCTGTTACTTAAGCAAGAATCTAAATCCGTTTATCTCCTTTGAGGTTGTGAAGAAATTGGATAACAATCCTCACATAGGGTTTCGATTTTGGGAGTTTAGTAGATTCAAATTGAACATTCGTCATTCGTTTTGGACTTATAATTTGCTAACGAGATCTCTTTGTAAAGCCGGTTTGCACGATTTAGCCGGTCAGATGTTTGAGTGTATGAAGAGCGATGGGGTTTCTCCGAATAATCGGTTATTAGGGTTCTTAGTGTCTTCGTTTGCTGAGAAAGGTAAGCTCCATTTCGCTACTGCGTTGCTTCTTCAGTCTTTTGAGGTTGAAGGATGTTGTATGGTGGTGAATAGTTTGTTGAATACTTTGGTGAAGTTGGATCGTGTGGAAGATGCGATGAAGCTTTTTGATGAACATTTGAGATTTCAGTCTTGTAATGATACAAAGACGTTTAACATTTTGATTCGAGGTTTGTGCGGCGTAGGGAAAGCGGAGAAAGCGTTAGAGCTTTTGGGTGTGATGAGTGGTTTTGGTTGTGAGCCTGACATTGTTACGTATAATACTCTTATTCAGGGGTTTTGCAAGAGTAATGAGTTGAACAAAGCGAGTGAGATGTTTAAAGATGTTAAGTCGGGTAGTGTTTGCTCTCCTGATGTTGTTACATATACTTCGATGATCTCAGGGTACTGCAAAGCTGGGAAGATGCGTGAAGCGTCGAGTTTGTTAGATGATATGCTTCGTTTGGGGATATATCCAACTAATGTGACTTTTAATGTCCTCGTTGATGGTTATGCGAAAGCTGGTGAGATGCTTACTGCTGAAGAAATTCGTGGGAAAATGATTTCTTTTGGCTGTTTCCCGGATGTAGTGACGTTTACTTCCTTAATTGATGGATATTGTAGAGTAGGACAAGTGAGCCAAGGTTTTAGGCTTTGGGAAGAAATGAATGCCAGAGGAATGTTTCCTAATGCATTTACCTATTCTATTCTTATCAATGCGCTCTGTAACGAGAATAGGCTGCTCAAGGCTCGTGAACTTCTGGGGCAGTTAGCTAGTAAGGACATTATTCCACAACCATTTATGTACAACCCTGTCATTGATGGGTTTTGTAAAGCTGGAAAGGTCAATGAGGCAAATGTTATTGTGGAAGAGATGGAGAAGAAGAAATGCAAACCAGATAAGATCACATTTACGATTCTTATAATCGGGCATTGCATGAAAGGAAGGATGTTTGAAGCAGTTAGCATTTTCCACAAAATGGTTGCGATAGGTTGTTCACCGGATAAGATTACTGTGAGTTCTTTGTTATCTTGTCTTCTTAAGGCTGGTATGGCTAAGGAGGCCTATCACTTAAACCAGATAGCACGTAAAGGCCAAAGTAATAACGTGGTACCTCTAGAGACGAAAACCGCAAATGCGACTCTGGCTGCCTGCTAG

Protein Analysis

536

Amino Acids

59.77

Weight (kDa)

8.59

Isoelectric Point (pI)

31.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 205 - 253 2.5e-15 PPR repeat family
PPR_1 PF12854 236 - 266 2.4e-13 PPR repeat
PPR_2 PF13041 239 - 288 7.5e-17 PPR repeat family
PPR PF01535 242 - 269 2e-06 PPR repeat
PPR_1 PF12854 273 - 303 6.8e-14 PPR repeat
PPR_2 PF13041 275 - 324 2.2e-18 PPR repeat family
PPR_3 PF13812 275 - 322 5.9e-08 Pentatricopeptide repeat domain
PPR PF01535 278 - 308 4.7e-11 PPR repeat
PPR_2 PF13041 310 - 359 1.3e-12 PPR repeat family
PPR PF01535 313 - 343 5.1e-06 PPR repeat
PPR_3 PF13812 342 - 393 3e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 342 - 373 8.2e-13 PPR repeat
PPR_2 PF13041 345 - 394 4.8e-20 PPR repeat family
PPR PF01535 348 - 377 6.4e-07 PPR repeat
PPR_1 PF12854 376 - 406 4.8e-09 PPR repeat
PPR_3 PF13812 406 - 459 4.9e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 415 - 444 3.7e-08 PPR repeat
PPR PF01535 418 - 448 5.3e-06 PPR repeat
PPR_2 PF13041 418 - 463 3.1e-15 PPR repeat family
PPR_1 PF12854 447 - 479 5e-09 PPR repeat
PPR PF01535 453 - 483 2.8e-06 PPR repeat
PPR_2 PF13041 457 - 498 4.4e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 318, 1376
Acc65I GGTACC 1 cut(s) 1564
AccB1I GGYRCC 1 cut(s) 1564
AccB7I CCANNNNNTGG 1 cut(s) 1432
AccII CGCG 1 cut(s) 20
AciI CCGC 4 cut(s) 24, 651, 665, 1584
AclWI GGATC 1 cut(s) 561
AcsI RAATTY 1 cut(s) 999
AcuI CTGAAG 3 cut(s) 132, 470, 1014
AfaI GTAC 4 cut(s) 152, 860, 1259, 1566
AfiI CCNNNNNNNGG 2 cut(s) 254, 1432
AflII CTTAAG 2 cut(s) 187, 1493
AgsI TTSAA 6 cut(s) 286, 292, 503, 535, 772, 1409
Alw21I GWGCWC 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 1568
AlwI GGATC 1 cut(s) 561
AoxI GGCC 2 cut(s) 1515, 1546
ApeKI GCWGC 2 cut(s) 1192, 1601
ApoI RAATTY 1 cut(s) 999
ArsI GACNNNNNNTTYG 2 cut(s) 304, 336
Asp700I GAANNNNTTC 1 cut(s) 999
Asp718I GGTACC 1 cut(s) 1564
AspLEI GCGC 1 cut(s) 1174
AsuC2I CCSGG 1 cut(s) 1034
AsuHPI GGTGA 4 cut(s) 532, 556, 989, 1443
AsuII TTCGAA 1 cut(s) 7
BanI GGYRCC 1 cut(s) 1564
BanII GRGCYC 1 cut(s) 64
BauI CACGAG 2 cut(s) 90, 1203
BbsI GAAGAC 2 cut(s) 429, 1481
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 2 cut(s) 1179, 1588
BccI CCATC 6 cut(s) 35, 389, 953, 1058, 1268, 1321
BcgI CGANNNNNNTGC 2 cut(s) 630, 664
BcnI CCSGG 1 cut(s) 1034
BcoDI GTCTC 1 cut(s) 1568
BfaI CTAG 3 cut(s) 1227, 1571, 1609
BfmI CTRYAG 1 cut(s) 77
BfrI CTTAAG 2 cut(s) 187, 1493
BglII AGATCT 2 cut(s) 169, 332
BisI GCNGC 3 cut(s) 652, 1193, 1602
BlsI GCNGC 3 cut(s) 653, 1194, 1603
Bme1390I CCNGG 1 cut(s) 1034
BmiI GGNNCC 1 cut(s) 1566
BmrFI CCNGG 1 cut(s) 1034
BmsI GCATC 3 cut(s) 556, 867, 972
BpiI GAAGAC 2 cut(s) 429, 1481
Bpu10I CCTNAGC 1 cut(s) 1509
Bpu14I TTCGAA 1 cut(s) 7
BpuEI CTTGAG 2 cut(s) 48, 1181
BpuMI CCSGG 1 cut(s) 1034
BsaAI YACGTR 2 cut(s) 729, 1541
BsaBI GATNNNNATC 2 cut(s) 168, 243
BsaJI CCNNGG 1 cut(s) 1093
BsaWI WCCGGW 1 cut(s) 1453
BsaXI ACNNNNNCTCC 2 cut(s) 659, 689
Bsc4I CCNNNNNNNGG 2 cut(s) 254, 1432
Bse118I RCCGGY 2 cut(s) 347, 365
Bse3DI GCAATG 1 cut(s) 1384
Bse8I GATNNNNATC 2 cut(s) 168, 243
BseDI CCNNGG 1 cut(s) 1093
BseGI GGATG 3 cut(s) 512, 1042, 1407
BseJI GATNNNNATC 2 cut(s) 168, 243
BseLI CCNNNNNNNGG 2 cut(s) 254, 1432
BseMI GCAATG 1 cut(s) 1384
BseMII CTCAG 2 cut(s) 438, 867
BseRI GAGGAG 1 cut(s) 72
BseXI GCAGC 2 cut(s) 1179, 1588
BseYI CCCAGC 1 cut(s) 869
Bsh1236I CGCG 1 cut(s) 20
Bsh1285I CGRYCG 1 cut(s) 24
BshFI GGCC 2 cut(s) 1517, 1548
BshNI GGYRCC 1 cut(s) 1564
BsiEI CGRYCG 1 cut(s) 24
BsiHKAI GWGCWC 1 cut(s) 64
BsiSI CCGG 4 cut(s) 348, 366, 1034, 1454
BslI CCNNNNNNNGG 2 cut(s) 254, 1432
BsmAI GTCTC 1 cut(s) 1568
BsmBI CGTCTC 1 cut(s) 1568
BsmI GAATGC 2 cut(s) 46, 1126
BsnI GGCC 2 cut(s) 1517, 1548
Bsp119I TTCGAA 1 cut(s) 7
Bsp1286I GDGCHC 1 cut(s) 64
Bsp1407I TGTACA 2 cut(s) 150, 1257
Bsp143I GATC 5 cut(s) 169, 332, 553, 849, 1356
Bsp68I TCGCGA 1 cut(s) 20
BspACI CCGC 4 cut(s) 24, 651, 665, 1584
BspANI GGCC 2 cut(s) 1517, 1548
BspCNI CTCAG 2 cut(s) 439, 866
BspFNI CGCG 1 cut(s) 20
BspLI GGNNCC 1 cut(s) 1566
BspPI GGATC 1 cut(s) 561
BspQI GCTCTTC 1 cut(s) 383
BspT104I TTCGAA 1 cut(s) 7
BspT107I GGYRCC 1 cut(s) 1564
BspTI CTTAAG 2 cut(s) 187, 1493
BsrDI GCAATG 1 cut(s) 1384
BsrFI RCCGGY 2 cut(s) 347, 365
BsrGI TGTACA 2 cut(s) 150, 1257
BssAI RCCGGY 2 cut(s) 347, 365
BssECI CCNNGG 1 cut(s) 1093
BssMI GATC 5 cut(s) 169, 332, 553, 849, 1356
BssSI CACGAG 2 cut(s) 90, 1203
BssT1I CCWWGG 1 cut(s) 1093
Bst2BI CACGAG 2 cut(s) 90, 1203
Bst4CI ACNGT 1 cut(s) 1468
Bst6I CTCTTC 2 cut(s) 383, 1317
BstAFI CTTAAG 2 cut(s) 187, 1493
BstAUI TGTACA 2 cut(s) 150, 1257
BstBAI YACGTR 2 cut(s) 729, 1541
BstBI TTCGAA 1 cut(s) 7
BstC8I GCNNGC 1 cut(s) 1606
BstDEI CTNAG 4 cut(s) 430, 447, 853, 1509
BstENI CCTNNNNNAGG 1 cut(s) 252
BstF5I GGATG 3 cut(s) 512, 1042, 1407
BstFNI CGCG 1 cut(s) 20
BstHHI GCGC 1 cut(s) 1174
BstKTI GATC 5 cut(s) 172, 335, 556, 852, 1359
BstMAI GTCTC 1 cut(s) 1568
BstMBI GATC 5 cut(s) 169, 332, 553, 849, 1356
BstMCI CGRYCG 1 cut(s) 24
BstMWI GCNNNNNNNGC 4 cut(s) 671, 1505, 1514, 1598
BstSCI CCNGG 1 cut(s) 1032
BstSFI CTRYAG 1 cut(s) 77
BstSNI TACGTA 1 cut(s) 729
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 2 cut(s) 1179, 1588
BstV2I GAAGAC 2 cut(s) 429, 1481
BstX2I RGATCY 2 cut(s) 169, 332
BstYI RGATCY 2 cut(s) 169, 332
BsuRI GGCC 2 cut(s) 1517, 1548
BtgZI GCGATG 3 cut(s) 13, 408, 584
BtsCI GGATG 3 cut(s) 512, 1042, 1407
BtuMI TCGCGA 1 cut(s) 20
Cac8I GCNNGC 1 cut(s) 1606
CfoI GCGC 1 cut(s) 1174
Cfr10I RCCGGY 2 cut(s) 347, 365
CseI GACGC 1 cut(s) 876
Csp6I GTAC 4 cut(s) 151, 859, 1258, 1565
CviAII CATG 2 cut(s) 53, 1390
CviQI GTAC 4 cut(s) 151, 859, 1258, 1565
DdeI CTNAG 4 cut(s) 430, 447, 853, 1509
DpnI GATC 5 cut(s) 171, 334, 555, 851, 1358
DpnII GATC 5 cut(s) 169, 332, 553, 849, 1356
DraI TTTAAA 1 cut(s) 793
Eam1104I CTCTTC 2 cut(s) 383, 1317
EarI CTCTTC 2 cut(s) 383, 1317
Ecl136II GAGCTC 1 cut(s) 62
Eco105I TACGTA 1 cut(s) 729
Eco130I CCWWGG 1 cut(s) 1093
Eco147I AGGCCT 1 cut(s) 1517
Eco24I GRGCYC 1 cut(s) 64
Eco53kI GAGCTC 1 cut(s) 62
Eco57I CTGAAG 3 cut(s) 132, 470, 1014
EcoICRI GAGCTC 1 cut(s) 62
EcoNI CCTNNNNNAGG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 1093
EcoT22I ATGCAT 1 cut(s) 1147
EcoT38I GRGCYC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 1093
Esp3I CGTCTC 1 cut(s) 1568
FaeI CATG 2 cut(s) 56, 1393
FatI CATG 2 cut(s) 52, 1389
Fnu4HI GCNGC 3 cut(s) 652, 1193, 1602
FokI GGATG 3 cut(s) 519, 1049, 1414
FriOI GRGCYC 1 cut(s) 64
Fsp4HI GCNGC 3 cut(s) 652, 1193, 1602
FspBI CTAG 3 cut(s) 1227, 1571, 1609
GlaI GCGC 1 cut(s) 1173
GluI GCNGC 3 cut(s) 652, 1193, 1602
GsaI CCCAGC 1 cut(s) 873
HaeIII GGCC 2 cut(s) 1517, 1548
HapII CCGG 4 cut(s) 348, 366, 1034, 1454
HgaI GACGC 1 cut(s) 876
HhaI GCGC 1 cut(s) 1174
Hin1II CATG 2 cut(s) 56, 1393
Hin6I GCGC 1 cut(s) 1172
HinP1I GCGC 1 cut(s) 1172
HindIII AAGCTT 2 cut(s) 114, 575
HinfI GANTC 7 cut(s) 4, 164, 196, 282, 637, 1369, 1594
HpaII CCGG 4 cut(s) 348, 366, 1034, 1454
HphI GGTGA 4 cut(s) 532, 556, 989, 1443
Hpy166II GTNNAC 4 cut(s) 151, 1050, 1208, 1451
Hpy188I TCNGA 3 cut(s) 169, 372, 408
Hpy188III TCNNGA 6 cut(s) 19, 110, 161, 824, 1205, 1571
Hpy8I GTNNAC 4 cut(s) 151, 1050, 1208, 1451
Hpy99I CGWCG 1 cut(s) 892
HpyAV CCTTC 2 cut(s) 497, 1392
HpyCH4III ACNGT 1 cut(s) 1468
HpyCH4IV ACGT 5 cut(s) 623, 728, 1046, 1540, 1560
HpyCH4V TGCA 6 cut(s) 355, 756, 864, 1145, 1344, 1389
HpyF10VI GCNNNNNNNGC 4 cut(s) 671, 1505, 1514, 1598
HpyF3I CTNAG 4 cut(s) 430, 447, 853, 1509
HpySE526I ACGT 5 cut(s) 623, 728, 1046, 1540, 1560
Hsp92II CATG 2 cut(s) 56, 1393
HspAI GCGC 1 cut(s) 1172
KpnI GGTACC 1 cut(s) 1568
Kzo9I GATC 5 cut(s) 169, 332, 553, 849, 1356
LguI GCTCTTC 1 cut(s) 383
LmnI GCTCC 2 cut(s) 59, 465
Lsp1109I GCAGC 2 cut(s) 1179, 1588
LweI GCATC 3 cut(s) 556, 867, 972
MaeI CTAG 3 cut(s) 1227, 1571, 1609
MaeII ACGT 5 cut(s) 623, 728, 1046, 1540, 1560
MaeIII GTNAC 6 cut(s) 182, 724, 832, 937, 1042, 1178
MalI GATC 5 cut(s) 171, 334, 555, 851, 1358
MboI GATC 5 cut(s) 169, 332, 553, 849, 1356
MflI RGATCY 2 cut(s) 169, 332
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 5 cut(s) 233, 287, 319, 999, 1059
MlyI GAGTC 1 cut(s) 1588
MmeI TCCRAC 2 cut(s) 531, 953
Mph1103I ATGCAT 1 cut(s) 1147
MroXI GAANNNNTTC 1 cut(s) 999
MseI TTAA 8 cut(s) 188, 627, 792, 801, 945, 1058, 1494, 1526
MslI CAYNNNNRTG 1 cut(s) 51
MspCI CTTAAG 2 cut(s) 187, 1493
MspI CCGG 4 cut(s) 348, 366, 1034, 1454
MspR9I CCNGG 1 cut(s) 1034
Mva1269I GAATGC 2 cut(s) 46, 1126
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 4 cut(s) 671, 1505, 1514, 1598
NciI CCSGG 1 cut(s) 1034
NdeII GATC 5 cut(s) 169, 332, 553, 849, 1356
NlaIII CATG 2 cut(s) 56, 1393
NlaIV GGNNCC 1 cut(s) 1566
NmuCI GTSAC 2 cut(s) 937, 1042
NruI TCGCGA 1 cut(s) 20
NsiI ATGCAT 1 cut(s) 1147
NspV TTCGAA 1 cut(s) 7
PceI AGGCCT 1 cut(s) 1517
PciSI GCTCTTC 1 cut(s) 383
PctI GAATGC 2 cut(s) 46, 1126
PdmI GAANNNNTTC 1 cut(s) 999
PfeI GAWTC 6 cut(s) 4, 164, 196, 282, 637, 1369
PflMI CCANNNNNTGG 1 cut(s) 1432
PfoI TCCNGGA 1 cut(s) 1032
PkrI GCNGC 3 cut(s) 653, 1194, 1603
PleI GAGTC 1 cut(s) 1588
PpsI GAGTC 1 cut(s) 1588
Ppu21I YACGTR 2 cut(s) 729, 1541
PsiI TTATAA 2 cut(s) 318, 1376
Psp124BI GAGCTC 1 cut(s) 64
PspFI CCCAGC 1 cut(s) 869
PspN4I GGNNCC 1 cut(s) 1566
PsuI RGATCY 2 cut(s) 169, 332
RruI TCGCGA 1 cut(s) 20
RsaI GTAC 4 cut(s) 152, 860, 1259, 1566
RsaNI GTAC 4 cut(s) 151, 859, 1258, 1565
RseI CAYNNNNRTG 1 cut(s) 51
SacI GAGCTC 1 cut(s) 64
SapI GCTCTTC 1 cut(s) 383
SaqAI TTAA 8 cut(s) 188, 627, 792, 801, 945, 1058, 1494, 1526
SatI GCNGC 3 cut(s) 652, 1193, 1602
Sau3AI GATC 5 cut(s) 169, 332, 553, 849, 1356
SchI GAGTC 1 cut(s) 1588
ScrFI CCNGG 1 cut(s) 1034
SduI GDGCHC 1 cut(s) 64
SfaNI GCATC 3 cut(s) 556, 867, 972
SfcI CTRYAG 1 cut(s) 77
SfuI TTCGAA 1 cut(s) 7
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 4 cut(s) 63, 187, 1196, 1493
SmoI CTYRAG 4 cut(s) 63, 187, 1196, 1493
SnaBI TACGTA 1 cut(s) 729
Sse9I AATT 5 cut(s) 233, 287, 319, 999, 1059
SseBI AGGCCT 1 cut(s) 1517
SsiI CCGC 4 cut(s) 24, 651, 665, 1584
SspMI CTAG 3 cut(s) 1227, 1571, 1609
SstI GAGCTC 1 cut(s) 64
StuI AGGCCT 1 cut(s) 1517
StyD4I CCNGG 1 cut(s) 1032
StyI CCWWGG 1 cut(s) 1093
TaaI ACNGT 1 cut(s) 1468
TaiI ACGT 5 cut(s) 626, 731, 1049, 1543, 1563
TaqI TCGA 5 cut(s) 7, 262, 640, 845, 890
TasI AATT 5 cut(s) 233, 287, 319, 999, 1059
TatI WGTACW 2 cut(s) 150, 1257
TauI GCSGC 1 cut(s) 654
TfiI GAWTC 6 cut(s) 4, 164, 196, 282, 637, 1369
Tru1I TTAA 8 cut(s) 188, 627, 792, 801, 945, 1058, 1494, 1526
Tru9I TTAA 8 cut(s) 188, 627, 792, 801, 945, 1058, 1494, 1526
TseFI GTSAC 2 cut(s) 937, 1042
TseI GCWGC 2 cut(s) 1192, 1601
Tsp45I GTSAC 2 cut(s) 937, 1042
TspDTI ATGAA 5 cut(s) 401, 587, 600, 1133, 1406
TspGWI ACGGA 1 cut(s) 195
Van91I CCANNNNNTGG 1 cut(s) 1432
Vha464I CTTAAG 2 cut(s) 187, 1493
XagI CCTNNNNNAGG 1 cut(s) 252
XapI RAATTY 1 cut(s) 999
XbaI TCTAGA 1 cut(s) 1570
XmnI GAANNNNTTC 1 cut(s) 999
XspI CTAG 3 cut(s) 1227, 1571, 1609
Zsp2I ATGCAT 1 cut(s) 1147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.