MD15G1217800.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0010083
Physical Location & Seq
Forward (+)
17542255 .. 17544733
2479 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1217800.v1.1.491

Sequence Viewer

Length: 1794 bp
ATGAGAACCCAGGATCCGAATCCCAAACCCCATACGACTTCCGGGCGACCCGCGAGAAAATCCGGTCAATCAACCCGAACCCAGAACAGGATTTTCATTGAAAACATCTATGAGAGCAGTGCTGAGCCTAGGGATGGCGCGGCAGTGCAGATGACCGTCCTGTTCTTCAAAGCCCGTCCGACCTTCTGGGTTCGAGCCTCCAAGATCGCCGTTTCCCATTTTCACAACCTCGCCCACGGTGGAGCTCGGCCGCGCCCGCTTCACGACTTTGAGGTAACGTCAAACCCAGAGGCTTGGTTTGTGAAAGTTGTTTGCACTCTGTTTCTTCGCTCGCATTCATTGGATTTGGTTTATCTTAGTAAGAACCTTTCGCCTTCGACTGCTTTCGAGGTTATTAAAAGGTTGAACAATCCGATATTGGGGTTGAAATTCTTTGAGCTCAGTAGGGTTAGTTTGAGTGTTAATCATAGTGTATGGACTTACAATTTTCTTTTGAGGTCTCTGTGTCAAATGGGGCTTCAAGATTCTGCTAAATTGGTGTTTGATTACATGAGGAGTGATGGGCATACGCCCGATGATTCGGCTGTGGAACTCTTGGTGTCGTCGTATGCTCAGATGGGCAAGTTGGATAATGCTGAGAAGTTTCTTGGTGAGGTTCATTGTGATGAGATTAGATTGACGCCTTTCGTATACAATAACTTGTTCAATGTGTTGGTTAAACAGAATAAAGTGGATGAGGCTGTTTGCTTGTTTAGAAAGCATATGGGGTCGCATTGTTGCCCGGATAGCTGGACTTTCAATATTCTAATTCGAGGTCTATGCAGAGTTGGGGAAATTGGTAAGGCTTTTGAGTTGTTCAGTGATATGGGGAGTTTTGGTTGCTACCCCGATATAGTTACGTATAATACACTAATTACTGGACTTTGTAGGACTAACGAGGTAGATAGGGGATGTCAATTACTCAAAGAGGTTCAATCAAGAATCGAACTTTCACCTGATGTTATAACTTTCACGTCAGTCATATCAGGATATTGCAAGTTGGGTAAGATGGAGGAGGCCTCCGTTCTTTTTGATGAGATGATTAATGCTGGAGTTAGACCAACTTCTGTTACTTTCAATGCAATGATTGATGGATTTGGTAAGACTGGCAACATGGGTTCTGCACTTGCCATGCATCAGAAAATGCTCTTTCATGGTTATCGTTCGGATGTTTTTACCTTCACTTCCCTAATTGATGGCCATTGTCGAGCTGGGCAACTGAGTCAGGGATTAAAGCTTTGGCAGGAGATGAATGGGAAAGATGTGTCTCCAAGTGCATATACTTTCTCTGTCCTTATTAACGCTTTGTGCAAGGAGAGTAGACTACATGAAGCACGTGATTTTCTGAGGCAATTAAAGTGGAGTAATGTGGTTCTGAAACCTTTTATCTACAACCCTGTGATAGATGGATTCTGTAAGGCTGGCAATGTTGATGAGGCAAACGCCATTGTGGCCGAGATGGAAGAGAAGAGATGCAGCCCAGATAAAGTGACGTTTACCATTCTCATACTCGGGAATTGTATGAAAGGTAGAATGTCTGAGGCAATTAGCAACTTTAAAAAGATGTTGGCAATTGGTTGTGCCCCAGACAACATCACCGTAAATGCTTTGACATCTTGCCTCATGAAGGCTGGGATGCCTAATGAAGCCCATCACATTAAGCAAATTGCATACAAGGACCTCAATTCGGGCATGTCACCTTCAGGAAGAACTGATCATATGAAAGCAAACGCACAAATTCCAGTGGCTGTTTGA

Protein Analysis

598

Amino Acids

66.66

Weight (kDa)

8.61

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 229 - 275 3.6e-11 PPR repeat family
PPR_1 PF12854 258 - 289 4.8e-12 PPR repeat
PPR_2 PF13041 261 - 310 5.7e-18 PPR repeat family
PPR PF01535 265 - 294 3.6e-07 PPR repeat
PPR_1 PF12854 293 - 323 1.2e-10 PPR repeat
PPR_3 PF13812 321 - 381 3e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 330 - 360 2.3e-12 PPR repeat
PPR_2 PF13041 332 - 381 4.6e-17 PPR repeat family
PPR PF01535 335 - 365 1.6e-09 PPR repeat
PPR_1 PF12854 364 - 395 6.3e-06 PPR repeat
PPR_2 PF13041 367 - 416 1.5e-12 PPR repeat family
PPR PF01535 370 - 399 9.3e-06 PPR repeat
PPR_1 PF12854 399 - 430 2e-08 PPR repeat
PPR_2 PF13041 403 - 451 7e-16 PPR repeat family
PPR PF01535 405 - 434 5.7e-06 PPR repeat
PPR_long PF17177 415 - 560 7.7e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 433 - 464 3e-07 PPR repeat
PPR_2 PF13041 475 - 520 1.2e-13 PPR repeat family
PPR_1 PF12854 475 - 501 1.8e-07 PPR repeat
PPR_3 PF13812 475 - 516 9.9e-06 Pentatricopeptide repeat domain
PPR PF01535 476 - 505 5.9e-06 PPR repeat
PPR_1 PF12854 503 - 535 1.1e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1004
AccI GTMKAC 2 cut(s) 690, 1360
AccII CGCG 3 cut(s) 53, 140, 253
AciI CCGC 4 cut(s) 51, 140, 251, 257
AclWI GGATC 2 cut(s) 8, 21
AcoI YGGCCR 3 cut(s) 248, 1237, 1491
AcsI RAATTY 2 cut(s) 428, 1776
AcuI CTGAAG 1 cut(s) 1725
AcvI CACGTG 1 cut(s) 1376
AcyI GRCGYC 1 cut(s) 680
AfiI CCNNNNNNNGG 5 cut(s) 87, 134, 419, 1666, 1726
AgsI TTSAA 9 cut(s) 101, 169, 406, 427, 521, 706, 799, 974, 1117
AjiI CACGTC 1 cut(s) 1014
AjnI CCWGG 1 cut(s) 9
AloI GAACNNNNNNTCC 1 cut(s) 30
AluBI AGCT 5 cut(s) 245, 439, 789, 1250, 1276
AluI AGCT 5 cut(s) 245, 439, 789, 1250, 1276
Alw21I GWGCWC 2 cut(s) 247, 441
Alw26I GTCTC 2 cut(s) 504, 1311
AlwI GGATC 2 cut(s) 8, 21
AlwNI CAGNNNCTG 1 cut(s) 1787
Ama87I CYCGRG 1 cut(s) 1550
AoxI GGCC 4 cut(s) 248, 1056, 1237, 1491
ApeKI GCWGC 1 cut(s) 1515
ApoI RAATTY 2 cut(s) 428, 1776
AseI ATTAAT 1 cut(s) 1083
AspA2I CCTAGG 1 cut(s) 128
AspLEI GCGC 2 cut(s) 140, 255
AspS9I GGNCC 1 cut(s) 1717
AsuC2I CCSGG 2 cut(s) 43, 782
AsuHPI GGTGA 4 cut(s) 662, 984, 1627, 1728
AvaI CYCGRG 1 cut(s) 1550
AvaII GGWCC 1 cut(s) 1717
AvrII CCTAGG 1 cut(s) 128
BaeGI GKGCMC 1 cut(s) 1624
BalI TGGCCA 1 cut(s) 1239
BamHI GGATCC 1 cut(s) 13
BanII GRGCYC 2 cut(s) 247, 441
BbrPI CACGTG 1 cut(s) 1376
Bbv12I GWGCWC 2 cut(s) 247, 441
BbvI GCAGC 1 cut(s) 1527
BccI CCATC 9 cut(s) 128, 554, 610, 1042, 1124, 1229, 1439, 1492, 1698
BceAI ACGGC 1 cut(s) 194
BcgI CGANNNNNNTGC 2 cut(s) 801, 835
BciT130I CCWGG 1 cut(s) 11
BclI TGATCA 1 cut(s) 1753
BcnI CCSGG 2 cut(s) 43, 782
BcoDI GTCTC 2 cut(s) 504, 1311
BfaI CTAG 1 cut(s) 129
BglI GCCNNNNNGGC 1 cut(s) 1490
BisI GCNGC 3 cut(s) 141, 251, 1516
BlnI CCTAGG 1 cut(s) 128
BlpI GCTNAGC 1 cut(s) 123
BlsI GCNGC 3 cut(s) 142, 252, 1517
Bme1390I CCNGG 3 cut(s) 11, 43, 782
Bme18I GGWCC 1 cut(s) 1717
BmeT110I CYCGRG 1 cut(s) 1550
BmgBI CACGTC 1 cut(s) 1014
BmgT120I GGNCC 1 cut(s) 1717
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 3 cut(s) 11, 43, 782
BmsI GCATC 3 cut(s) 1183, 1502, 1665
BplI GAGNNNNNCTC 2 cut(s) 1043, 1075
BpmI CTGGAG 1 cut(s) 1110
Bpu1102I GCTNAGC 1 cut(s) 123
BpuMI CCSGG 2 cut(s) 43, 782
BsaAI YACGTR 2 cut(s) 900, 1376
BsaBI GATNNNNATC 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 680
BsaI GGTCTC 1 cut(s) 504
BsaJI CCNNGG 3 cut(s) 9, 128, 235
BsaWI WCCGGW 1 cut(s) 62
BsaXI ACNNNNNCTCC 2 cut(s) 862, 892
Bsc4I CCNNNNNNNGG 5 cut(s) 87, 134, 419, 1666, 1726
Bse1I ACTGG 3 cut(s) 922, 1150, 1781
Bse3DI GCAATG 2 cut(s) 1128, 1471
Bse8I GATNNNNATC 1 cut(s) 18
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 3 cut(s) 9, 128, 235
BseGI GGATG 5 cut(s) 139, 739, 956, 1213, 1680
BseJI GATNNNNATC 1 cut(s) 18
BseLI CCNNNNNNNGG 5 cut(s) 87, 134, 419, 1666, 1726
BseMI GCAATG 2 cut(s) 1128, 1471
BseMII CTCAG 7 cut(s) 114, 454, 626, 627, 1250, 1376, 1569
BseNI ACTGG 3 cut(s) 922, 1150, 1781
BseRI GAGGAG 2 cut(s) 568, 1067
BseSI GKGCMC 1 cut(s) 1624
BseX3I CGGCCG 1 cut(s) 248
BseXI GCAGC 1 cut(s) 1527
BseYI CCCAGC 2 cut(s) 1250, 1670
BsgI GTGCAG 2 cut(s) 167, 1146
Bsh1236I CGCG 3 cut(s) 53, 140, 253
Bsh1285I CGRYCG 1 cut(s) 251
BshFI GGCC 4 cut(s) 250, 1058, 1239, 1493
BsiEI CGRYCG 1 cut(s) 251
BsiHKAI GWGCWC 2 cut(s) 247, 441
BsiHKCI CYCGRG 1 cut(s) 1550
BsiSI CCGG 3 cut(s) 42, 63, 782
BslI CCNNNNNNNGG 5 cut(s) 87, 134, 419, 1666, 1726
BsmAI GTCTC 2 cut(s) 504, 1311
BsmI GAATGC 1 cut(s) 334
BsnI GGCC 4 cut(s) 250, 1058, 1239, 1493
Bso31I GGTCTC 1 cut(s) 504
BsoBI CYCGRG 1 cut(s) 1550
Bsp1286I GDGCHC 3 cut(s) 247, 441, 1624
Bsp143I GATC 3 cut(s) 13, 204, 1753
Bsp1720I GCTNAGC 1 cut(s) 123
BspACI CCGC 4 cut(s) 51, 140, 251, 257
BspANI GGCC 4 cut(s) 250, 1058, 1239, 1493
BspCNI CTCAG 7 cut(s) 115, 453, 625, 628, 1251, 1377, 1570
BspFNI CGCG 3 cut(s) 53, 140, 253
BspHI TCATGA 1 cut(s) 1662
BspLI GGNNCC 1 cut(s) 15
BspPI GGATC 2 cut(s) 8, 21
BspTNI GGTCTC 1 cut(s) 504
BsrDI GCAATG 2 cut(s) 1128, 1471
BsrI ACTGG 3 cut(s) 922, 1150, 1781
BssECI CCNNGG 3 cut(s) 9, 128, 235
BssMI GATC 3 cut(s) 13, 204, 1753
BssNAI GTATAC 1 cut(s) 691
BssNI GRCGYC 1 cut(s) 680
BssT1I CCWWGG 1 cut(s) 128
Bst1107I GTATAC 1 cut(s) 691
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 3 cut(s) 157, 239, 1639
Bst6I CTCTTC 2 cut(s) 1497, 1502
BstACI GRCGYC 1 cut(s) 680
BstBAI YACGTR 2 cut(s) 900, 1376
BstC8I GCNNGC 3 cut(s) 257, 332, 1462
BstDEI CTNAG 8 cut(s) 123, 356, 440, 612, 636, 1259, 1385, 1578
BstDSI CCRYGG 1 cut(s) 235
BstENI CCTNNNNNAGG 1 cut(s) 1664
BstF5I GGATG 5 cut(s) 139, 739, 956, 1213, 1680
BstFNI CGCG 3 cut(s) 53, 140, 253
BstHHI GCGC 2 cut(s) 140, 255
BstKTI GATC 3 cut(s) 16, 207, 1756
BstMAI GTCTC 2 cut(s) 504, 1311
BstMBI GATC 3 cut(s) 13, 204, 1753
BstMCI CGRYCG 1 cut(s) 251
BstMWI GCNNNNNNNGC 3 cut(s) 256, 786, 1490
BstNI CCWGG 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 1735
BstSCI CCNGG 3 cut(s) 9, 41, 780
BstSLI GKGCMC 1 cut(s) 1624
BstSNI TACGTA 1 cut(s) 900
BstUI CGCG 3 cut(s) 53, 140, 253
BstV1I GCAGC 1 cut(s) 1527
BstX2I RGATCY 1 cut(s) 13
BstXI CCANNNNNNTGG 1 cut(s) 294
BstYI RGATCY 1 cut(s) 13
BstZ17I GTATAC 1 cut(s) 691
BstZI CGGCCG 1 cut(s) 248
BsuRI GGCC 4 cut(s) 250, 1058, 1239, 1493
BtgI CCRYGG 1 cut(s) 235
BtrI CACGTC 1 cut(s) 1014
BtsCI GGATG 5 cut(s) 139, 739, 956, 1213, 1680
BtsI GCAGTG 2 cut(s) 124, 150
BtsIMutI CAGTG 4 cut(s) 124, 150, 865, 1788
Cac8I GCNNGC 3 cut(s) 257, 332, 1462
CaiI CAGNNNCTG 1 cut(s) 1787
CciI TCATGA 1 cut(s) 1662
CfoI GCGC 2 cut(s) 140, 255
Cfr13I GGNCC 1 cut(s) 1717
CseI GACGC 1 cut(s) 688
CspCI CAANNNNNGTGG 2 cut(s) 1379, 1414
CviAII CATG 7 cut(s) 550, 1153, 1171, 1193, 1367, 1663, 1732
DdeI CTNAG 8 cut(s) 123, 356, 440, 612, 636, 1259, 1385, 1578
DpnI GATC 3 cut(s) 15, 206, 1755
DpnII GATC 3 cut(s) 13, 204, 1753
DraI TTTAAA 1 cut(s) 1597
EaeI YGGCCR 3 cut(s) 248, 1237, 1491
EagI CGGCCG 1 cut(s) 248
Eam1104I CTCTTC 2 cut(s) 1497, 1502
EarI CTCTTC 2 cut(s) 1497, 1502
Ecl136II GAGCTC 2 cut(s) 245, 439
EclXI CGGCCG 1 cut(s) 248
Eco105I TACGTA 1 cut(s) 900
Eco130I CCWWGG 1 cut(s) 128
Eco147I AGGCCT 1 cut(s) 1058
Eco24I GRGCYC 2 cut(s) 247, 441
Eco31I GGTCTC 1 cut(s) 504
Eco47I GGWCC 1 cut(s) 1717
Eco52I CGGCCG 1 cut(s) 248
Eco53kI GAGCTC 2 cut(s) 245, 439
Eco57I CTGAAG 1 cut(s) 1725
Eco72I CACGTG 1 cut(s) 1376
Eco88I CYCGRG 1 cut(s) 1550
EcoICRI GAGCTC 2 cut(s) 245, 439
EcoNI CCTNNNNNAGG 1 cut(s) 1664
EcoO109I RGGNCCY 1 cut(s) 1717
EcoRII CCWGG 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 128
EcoT22I ATGCAT 1 cut(s) 1176
EcoT38I GRGCYC 2 cut(s) 247, 441
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 7 cut(s) 553, 1156, 1174, 1196, 1370, 1666, 1735
FatI CATG 7 cut(s) 549, 1152, 1170, 1192, 1366, 1662, 1731
FauI CCCGC 2 cut(s) 58, 264
FauNDI CATATG 2 cut(s) 762, 1758
FbaI TGATCA 1 cut(s) 1753
FblI GTMKAC 2 cut(s) 690, 1360
Fnu4HI GCNGC 3 cut(s) 141, 251, 1516
FokI GGATG 5 cut(s) 146, 746, 963, 1220, 1687
FriOI GRGCYC 2 cut(s) 247, 441
Fsp4HI GCNGC 3 cut(s) 141, 251, 1516
FspBI CTAG 1 cut(s) 129
GlaI GCGC 2 cut(s) 139, 254
GluI GCNGC 3 cut(s) 141, 251, 1516
GsaI CCCAGC 2 cut(s) 1254, 1674
GsuI CTGGAG 1 cut(s) 1110
HaeIII GGCC 4 cut(s) 250, 1058, 1239, 1493
HapII CCGG 3 cut(s) 42, 63, 782
HgaI GACGC 1 cut(s) 688
HhaI GCGC 2 cut(s) 140, 255
Hin1I GRCGYC 1 cut(s) 680
Hin1II CATG 7 cut(s) 553, 1156, 1174, 1196, 1370, 1666, 1735
Hin6I GCGC 2 cut(s) 138, 253
HinP1I GCGC 2 cut(s) 138, 253
HindIII AAGCTT 1 cut(s) 1274
HinfI GANTC 6 cut(s) 19, 524, 578, 981, 1261, 1449
HpaII CCGG 3 cut(s) 42, 63, 782
HphI GGTGA 4 cut(s) 662, 984, 1627, 1728
Hpy166II GTNNAC 3 cut(s) 691, 1361, 1536
Hpy188I TCNGA 9 cut(s) 18, 180, 414, 615, 1179, 1207, 1386, 1416, 1579
Hpy188III TCNNGA 7 cut(s) 263, 521, 978, 1026, 1552, 1663, 1743
Hpy8I GTNNAC 3 cut(s) 691, 1361, 1536
Hpy99I CGWCG 1 cut(s) 607
HpyAV CCTTC 5 cut(s) 193, 384, 1228, 1660, 1749
HpyCH4III ACNGT 3 cut(s) 157, 239, 1639
HpyCH4IV ACGT 5 cut(s) 278, 899, 1013, 1375, 1532
HpyF10VI GCNNNNNNNGC 3 cut(s) 256, 786, 1490
HpyF3I CTNAG 8 cut(s) 123, 356, 440, 612, 636, 1259, 1385, 1578
HpySE526I ACGT 5 cut(s) 278, 899, 1013, 1375, 1532
Hsp92I GRCGYC 1 cut(s) 680
Hsp92II CATG 7 cut(s) 553, 1156, 1174, 1196, 1370, 1666, 1735
HspAI GCGC 2 cut(s) 138, 253
Ksp22I TGATCA 1 cut(s) 1753
Kzo9I GATC 3 cut(s) 13, 204, 1753
LmnI GCTCC 1 cut(s) 242
Lsp1109I GCAGC 1 cut(s) 1527
LweI GCATC 3 cut(s) 1183, 1502, 1665
MaeI CTAG 1 cut(s) 129
MaeII ACGT 5 cut(s) 278, 899, 1013, 1375, 1532
MaeIII GTNAC 5 cut(s) 274, 895, 1108, 1528, 1734
MalI GATC 3 cut(s) 15, 206, 1755
MboI GATC 3 cut(s) 13, 204, 1753
MboII GAAGA 5 cut(s) 157, 317, 1514, 1519, 1758
MfeI CAATTG 1 cut(s) 1611
MflI RGATCY 1 cut(s) 13
MhlI GDGCHC 3 cut(s) 247, 441, 1624
MlsI TGGCCA 1 cut(s) 1239
MluNI TGGCCA 1 cut(s) 1239
MlyI GAGTC 1 cut(s) 1270
MmeI TCCRAC 2 cut(s) 203, 606
Mox20I TGGCCA 1 cut(s) 1239
Mph1103I ATGCAT 1 cut(s) 1176
MscI TGGCCA 1 cut(s) 1239
MseI TTAA 9 cut(s) 396, 462, 717, 1083, 1271, 1338, 1394, 1596, 1698
MslI CAYNNNNRTG 1 cut(s) 663
Msp20I TGGCCA 1 cut(s) 1239
MspI CCGG 3 cut(s) 42, 63, 782
MspR9I CCNGG 3 cut(s) 11, 43, 782
MunI CAATTG 1 cut(s) 1611
Mva1269I GAATGC 1 cut(s) 334
MvaI CCWGG 1 cut(s) 11
MvnI CGCG 3 cut(s) 53, 140, 253
MwoI GCNNNNNNNGC 3 cut(s) 256, 786, 1490
NciI CCSGG 2 cut(s) 43, 782
NdeI CATATG 2 cut(s) 762, 1758
NdeII GATC 3 cut(s) 13, 204, 1753
NlaIII CATG 7 cut(s) 553, 1156, 1174, 1196, 1370, 1666, 1735
NlaIV GGNNCC 1 cut(s) 15
NmeAIII GCCGAG 2 cut(s) 226, 1519
NmuCI GTSAC 2 cut(s) 1528, 1734
NsiI ATGCAT 1 cut(s) 1176
NspI RCATGY 1 cut(s) 1735
PagI TCATGA 1 cut(s) 1662
PceI AGGCCT 1 cut(s) 1058
PctI GAATGC 1 cut(s) 334
PfeI GAWTC 5 cut(s) 19, 524, 578, 981, 1449
PkrI GCNGC 3 cut(s) 142, 252, 1517
PleI GAGTC 1 cut(s) 1269
PmaCI CACGTG 1 cut(s) 1376
PmlI CACGTG 1 cut(s) 1376
PpsI GAGTC 1 cut(s) 1269
Ppu21I YACGTR 2 cut(s) 900, 1376
PpuMI RGGWCCY 1 cut(s) 1717
PshBI ATTAAT 1 cut(s) 1083
PsiI TTATAA 1 cut(s) 1004
Psp124BI GAGCTC 2 cut(s) 247, 441
Psp5II RGGWCCY 1 cut(s) 1717
Psp6I CCWGG 1 cut(s) 9
PspCI CACGTG 1 cut(s) 1376
PspFI CCCAGC 2 cut(s) 1250, 1670
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 1 cut(s) 1717
PspPPI RGGWCCY 1 cut(s) 1717
PstNI CAGNNNCTG 1 cut(s) 1787
PsuI RGATCY 1 cut(s) 13
RseI CAYNNNNRTG 1 cut(s) 663
SacI GAGCTC 2 cut(s) 247, 441
SaqAI TTAA 9 cut(s) 396, 462, 717, 1083, 1271, 1338, 1394, 1596, 1698
SatI GCNGC 3 cut(s) 141, 251, 1516
Sau3AI GATC 3 cut(s) 13, 204, 1753
Sau96I GGNCC 1 cut(s) 1717
SchI GAGTC 1 cut(s) 1270
ScrFI CCNGG 3 cut(s) 11, 43, 782
SduI GDGCHC 3 cut(s) 247, 441, 1624
SfaNI GCATC 3 cut(s) 1183, 1502, 1665
SinI GGWCC 1 cut(s) 1717
SmiMI CAYNNNNRTG 1 cut(s) 663
SnaBI TACGTA 1 cut(s) 900
SseBI AGGCCT 1 cut(s) 1058
SsiI CCGC 4 cut(s) 51, 140, 251, 257
SspI AATATT 1 cut(s) 802
SspMI CTAG 1 cut(s) 129
SstI GAGCTC 2 cut(s) 247, 441
StuI AGGCCT 1 cut(s) 1058
StyD4I CCNGG 3 cut(s) 9, 41, 780
StyI CCWWGG 1 cut(s) 128
TaaI ACNGT 3 cut(s) 157, 239, 1639
TaiI ACGT 5 cut(s) 281, 902, 1016, 1378, 1535
TaqI TCGA 6 cut(s) 193, 377, 387, 811, 984, 1246
TauI GCSGC 2 cut(s) 143, 253
TfiI GAWTC 5 cut(s) 19, 524, 578, 981, 1449
Tru1I TTAA 9 cut(s) 396, 462, 717, 1083, 1271, 1338, 1394, 1596, 1698
Tru9I TTAA 9 cut(s) 396, 462, 717, 1083, 1271, 1338, 1394, 1596, 1698
TscAI CASTG 4 cut(s) 124, 150, 865, 1788
TseFI GTSAC 2 cut(s) 1528, 1734
TseI GCWGC 1 cut(s) 1515
Tsp45I GTSAC 2 cut(s) 1528, 1734
TspGWI ACGGA 1 cut(s) 1051
TspRI CASTG 4 cut(s) 124, 150, 865, 1788
VpaK11BI GGWCC 1 cut(s) 1717
VspI ATTAAT 1 cut(s) 1083
XagI CCTNNNNNAGG 1 cut(s) 1664
XapI RAATTY 2 cut(s) 428, 1776
XceI RCATGY 1 cut(s) 1735
XcmI CCANNNNNNNNNTGG 1 cut(s) 1247
XmaJI CCTAGG 1 cut(s) 128
XmiI GTMKAC 2 cut(s) 690, 1360
XspI CTAG 1 cut(s) 129
Zsp2I ATGCAT 1 cut(s) 1176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.